David T. Roberts

Predicting the vulnerability of reservoirs to poor water quality and cyanobacterial blooms

Cyanobacterial blooms in drinking water reservoirs present a major ecosystem functioning and human health issue. The ability to predict reservoir vulnerability to these blooms would provide information critical for decision making, hazard prevention and management. We developed a new, comparative index of vulnerability based on simple measures of reservoir and catchment characteristics, rather than water quality data, which were instead used to test the indexs effectiveness. Testing was based on water quality data collected over a number of seasons and years from 15 drinking water reservoirs in subtropical, southeast Queensland. The index correlated significantly and strongly with algal cell densities, including potentially toxic cyanobacteria, as well as with the proportions of cyanobacteria in summer months. The index also performed better than each of the measures of reservoir and catchment characteristics alone, and as such, was able to encapsulate the physical characteristics of subtropical reservoirs, and their catchments, into an effective indicator of the vulnerability to summer blooms. This was further demonstrated by calculating the index for a new reservoir to be built within the study region. Under planned dimensions and land use, a comparatively high level of vulnerability was reached within a few years. However, the index score and the number of years taken to reach a similar level of vulnerability could be reduced simply by decreasing the percentage of grazing land cover via revegetation within the catchment. With climate change, continued river impoundment and the growing demand for potable water, our index has potential decision making benefits when planning future reservoirs to reduce their vulnerability to cyanobacterial blooms.

Multiple factors determine the effect of anthropogenic barriers to connectivity on riverine fish

Habitat fragmentation is a key anthropogenic factor in biodiversity decline, particularly in aquatic ecosystems. We predicted that differences in fish assemblage composition due to the impact of fragmentation would most strongly affect migratory species, and these effects would be dependent on the interaction between the characteristics of each barrier and the antecedent flow conditions that determine temporal variation in connectivity. These hypotheses were applied to a coastal river network in eastern Australia that is fragmented by multiple weirs and dams, including some with passage facilities. How these facilities interact with flow to mediate hydrological connectivity and hence patterns of community structure is unknown. Five distinct assemblages were identified that were associated with different combinations of environmental factors and barrier characteristics (spatial arrangement, passability), and key differences were due to variation in migration traits. Two spatially distinct assemblages were associated with fragmentation by two impassable barriers. However, the migration traits that accompanied these community changes were inconsistent between these groups, and likely reflected effects of barriers near the estuary and in the middle of the stream network on diadromous and freshwater-migratory species, respectively. Two assemblage groups in the vicinity of passable weirs varied temporally as a function of hydrology and the seasonal upstream movement of juvenile diadromous species. The effect of habitat loss in conjunction with fragmentation was evident, with a further assemblage group occurring in reaches where riparian vegetation and instream habitat have been altered by poor management of agriculture. This study indicates that the impact of habitat fragmentation in rivers depends on the interaction of the migration characteristics of biota, temporal variation in hydrology which mediates connectivity, and the location of anthropogenic barriers. Conservation policies aimed at minimizing human impacts on aquatic biodiversity need to jointly account for the separate impacts of habitat fragmentation and habitat loss.

Migration patterns and estuarine aggregations of a catadromous fish, Australian bass (Percalates novemaculeata) in a regulated river system

Catadromous fish species require adequate flows to migrate between fresh and saltwater habitats to reproduce. However, artificial barriers and flow alteration affect fish populations by reducing habitat connectivity and disrupting movement cues. In regulated rivers, it is critical that migratory flow requirements are quantified to optimise water allocation for multiple users. In the present study, we assessed the migratory timing, flow and estuarine aggregation requirements for Australian bass (Percalates novemaculeata). Over 2 years, 66 bass were tracked using an acoustic receiver array in the Logan River (Qld, Australia). Bass performed large-scale downstream movements in response to elevated winter flows (40 and 108m3 s–1), which facilitated migration to the lower estuary, where salinity conditions were appropriate for spawning. Bass migrations occurred only when gonads were mature, despite large flows providing opportunities for movement outside this period. Experimental flow releases from an impoundment (2.1m3 s–1) during winter did not elicit a migratory response. Connectivity between upstream and estuarine habitats was reduced by the presence of instream weirs, with downstream movement across weirs occurring only when sufficient flow magnitude was achieved (>76.1m3 s–1). These findings are relevant for water resource managers formulating environmental flow rules for catadromous fish species in systems with multiple instream artificial barriers.

Isolation and characterization of 21 polymorphic microsatellite loci in the iconic Australian lungfish, Neoceratodus forsteri, using the Ion Torrent next-generation sequencing platform

We isolated and characterized 21 microsatellite loci in the vulnerable and iconic Australian lungfish, Neoceratodus forsteri. Loci were screened across eight individuals from the Burnett River and 40 individuals from the Pine River. Genetic diversity was low with between one and six alleles per locus within populations and a maximum expected heterozygosity of 0.774. These loci will now be available to assess effective population sizes and genetic structure in N. forsteri across its natural range in South East Queensland, Australia.

Using an acoustic telemetry array to assess fish volumetric space use: A case study on impoundments, hypoxia and an air-breathing species (Neoceratodus forsteri)

Facultative air-breathing fish can persist in hypoxic waters due to their capacity to acquire atmospheric oxygen. Most studies examining responses of air-breathing fish to aquatic hypoxia have occurred under experimental conditions. How air-breathing fish respond to hypoxic conditions in the field has received less attention. Using depth sensor transmitters and an array of acoustic receivers to monitor the facultative air-breathing Australian lungfish (Neoceratodus forsteri), we investigated habitat preferences and behavioural responses to seasonal hypoxic zones in a riverine impoundment. Three-dimensional (3-D) kernel utilisation distribution (KUD) models revealed that during stratified conditions, lungfish remained above the oxycline, rarely venturing into hypoxic waters, whereas during holomixis lungfish used a wider range of depths. Total volumetric space utilisation did not change significantly during stratified periods, but the distribution of space used changed, constrained by the oxycline. Despite N. forsteri having lungs to supplement oxygen requirements, the presence of a hypoxic zone constrained the core (50% 3-D-KUD) volumetric space used by lungfish to <1.6% of the total available space of the study area. With increasing demand for new impoundments in many tropical and subtropical regions, the present study provides insights to how air-breathing fish species may respond to altered riverine conditions from impoundments.

Performance of the Packard Tri-Carb® 2770TR/SL liquid scintillation analyzer for 14C dating

We present results that demonstrate the potential of the Packard Tri-Carb (super R) Model 2770TR/SL for radiocarbon dating. For 2 g of sample benzene, a stable background count rate of 0.307 cpm and a stable counting efficiency of 64.78% were determined using a 13-75 keV counting window. Changes to the mathematical routines for t-SIE (quench indicating parameter) calculation and a reduction in the activity of the external standard have enabled stability of the t-SIE to be achieved, and combined with the use of a suitable balance point counting window; all of these factors give the stability of performance required for (super 14) C dating. Calculations based on the above parameters indicate that the limit of detection for 2 g samples, counted for 5000 min, is

Monitoring age-related trends in genomic diversity of Australian lungfish

lt;48,900 yr BP. The great advantage of this system is that these data were acquired using inexpensive standard 7-mL low potassium borosilicate glass vials. Vial holders manufactured from BGO reduced the background to 0.15 cpm with a minimum effect on efficiency (64.46% for 13-75 keV). A similar calculation of the limit of detection gave >51,700 BP. The use of the BGO vial holders in other instruments employing time-resolved liquid scintillation counting (TR-LSC) (Models 2250CA and 2260XL) also brought about significant improvements in detection limits.

Consequences of connectivity alteration on riverine fish assemblages: potential opportunities to overcome constraints in applying conventional monitoring designs

An important challenge for conservation science is to detect declines in intraspecific diversity so that management action can be guided towards populations or species at risk. The lifespan of Australian lungfish (Neoceratodus forsteri) exceeds 80 years, and human impacts on breeding habitat over the last half century may have impeded recruitment, leaving populations dominated by old postreproductive individuals, potentially resulting in a small and declining breeding population. Here, we conduct a “single‐sample” evaluation of genetic erosion within contemporary populations of the Australian lungfish. Genetic erosion is a temporal decline in intraspecific diversity due to factors such as reduced population size and inbreeding. We examined whether young individuals showed signs of reduced genetic diversity and/or inbreeding using a novel bomb radiocarbon dating method to age lungfish nonlethally, based on 14C ratios of scales. A total of 15,201 single nucleotide polymorphic (SNP) loci were genotyped in 92 individuals ranging in age from 2 to 77 years old. Standardized individual heterozygosity and individual inbreeding coefficients varied widely within and between riverine populations, but neither was associated with age, so perceived problems with recruitment have not translated into genetic erosion that could be considered a proximate threat to lungfish populations. Conservation concern has surrounded Australian lungfish for over a century. However, our results suggest that long‐lived threatened species can maintain stable levels of intraspecific variability when sufficient reproductive opportunities exist over the course of a long lifespan.