Dayong Xue

The complete mitochondrial genome of Biston panterinaria (Lepidoptera: Geometridae), with phylogenetic utility of mitochondrial genome in the Lepidoptera.

The complete mitochondrial genome (mitogenome) of the Chinese pistacia looper Biston panterinaria was sequenced and annotated (15,517bp). It contains the typical 37 genes of animal mitogenomes and a high A+T content (79.5%). All protein coding genes (PCGs) use standard ATN initiation codons except for cytochrome c oxidase 1 (COX1) with CGA. Eleven PCGs use a common stop codon of TAA or TAG, whereas COX2 and NADH dehydrogenase 4 (ND4) use a single T. All transfer RNA (tRNA) genes have the typical clover-leaf structure with the exception of tRNA(Ser(AGN)). We reconstructed a preliminary mitochondrial phylogeny of six ditrysian superfamilies and performed comparative analyses of inference methods (Bayesian Inference (BI), Maximum Likelihood (ML), and Maximum Parsimony (MP)), dataset compositions (including and excluding 3rd codon positions), and alignment methods (Muscle, Clustal W, and MAFFT). Our analyses indicated that inference methods and dataset compositions more significantly affected the phylogenetic results than alignment methods. BI analysis consistently revealed uncontroversial relationships with all dataset compositions. By contrast, ML analysis failed to reconstruct stable phylogeny at two nodes, whereas MP analysis had more difficulties in the tree resolution and nodal support. Distinct from most previous studies, our analyses revealed that Geometroidea had a closer lineage relationship with Bombycoidea than Noctuoidea. Similar to previous molecular studies, our analyses revealed that Hesperiidae were nested in the Papilionoidea clade, providing further evidence to the previous concept that Papilionoidea was paraphyletic, and none of the butterflies were associated with the Macroheterocera.

A mitochondrial genome phylogeny of owlet moths (Lepidoptera: Noctuoidea), and examination of the utility of mitochondrial genomes for lepidopteran phylogenetics.

A phylogenetic hypothesis for the lepidopteran superfamily Noctuoidea was inferred based on the complete mitochondrial (mt) genomes of 12 species (six newly sequenced). The monophyly of each noctuoid family in the latest classification was well supported. Novel and robust relationships were recovered at the family level, in contrast to previous analyses using nuclear genes. Erebidae was recovered as sister to (Nolidae+(Euteliidae+Noctuidae)), while Notodontidae was sister to all these taxa (the putatively basalmost lineage Oenosandridae was not included). In order to improve phylogenetic resolution using mt genomes, various analytical approaches were tested: Bayesian inference (BI) vs. maximum likelihood (ML), excluding vs. including RNA genes (rRNA or tRNA), and Gblocks treatment. The evolutionary signal within mt genomes had low sensitivity to analytical changes. Inference methods had the most significant influence. Inclusion of tRNAs positively increased the congruence of topologies, while inclusion of rRNAs resulted in a range of phylogenetic relationships varying depending on other analytical factors. The two Gblocks parameter settings had opposite effects on nodal support between the two inference methods. The relaxed parameter (GBRA) resulted in higher support values in BI analyses, while the strict parameter (GBDH) resulted in higher support values in ML analyses.

Evolutionary history of Apocheima cinerarius (Lepidoptera: Geometridae), a female flightless moth in northern China

The alterations in the phylogeographical structures of insects in response to the uplift of the Qinghai–Tibet Plateau and the Quaternary glaciations in eastern Asia, particularly in northern China, remain largely unknown. In this study, we selected Apocheima cinerarius, a moth with flightless females, using molecular data (complete mitochondrial genomes and nuclear data) and ecological niche modelling (ENM) to investigate the effects of paleoclimatic changes on the evolutionary history of insects in the area of northern China. The phylogenetic tree of complete mitochondrial genomes indicated that there were two lineages, the western and eastern lineages. The nuclear gene analyses also detected unique haplotypes in each lineage. Time of the most recent common ancestor (TMRCA) of the two lineages was approximately in Early–Middle Pleistocene. Bayesian skyline plots revealed that the western lineage underwent a population expansion event after the Last Glacial Maximum, whereas the eastern lineage underwent expansion between the Last Interglacial and the Last Glacial Maximum. Our results suggest that A. cinerarius expanded eastward from western sites until the moth was distributed across the entire region of northern China. Then, A. cinerarius underwent contraction into isolated glacial refugia followed by subsequent expansion driven by Pleistocene climate changes, which established a narrow sympatric area. Our results indicate that the Quaternary environmental fluctuations had profound influences on the diversification and demography of an insect in northern China, and the same species in north‐western China and north‐eastern China have different demographic histories.

A molecular phylogeny of the Palaearctic and Oriental members of the tribe Boarmiini (Lepidoptera : Geometridae : Ennominae)

Abstract. Owing to the high species diversity and the lack of a modern revision, the phylogenetic relationships within the tribe Boarmiini remain largely unexplored. In this study, we reconstruct the first molecular phylogeny of the Palaearctic and Oriental members of Boarmiini, and infer the relationships among tribes within the ‘boarmiine’ lineage. One mitochondrial (COI) and four nuclear (EF-1α, CAD, RpS5, GAPDH) genes for 56 genera and 96 species of Boarmiini mostly from the Palaearctic and Oriental regions were included in the study. Analyses of Bayesian inference and maximum likelihood recovered largely congruent results. The monophyly of Boarmiini is supported by our results. Seven clades and seven subclades within Boarmiini were found. The molecular results coupled with morphological studies suggested the synonymisation of Zanclopera Warren, 1894, syn. nov. with Krananda Moore, 1868. The following new combinations are proposed: Krananda straminearia (Leech, 1897) (comb. nov.), Krananda falcata (Warren, 1894) (comb. nov.), and Krananda fulva (Yazaki, 1994) (comb. nov.). Our results also supported the monophyly of the ‘boarmiine’ lineage. Boarmiini were recovered as sister to the remaining taxa within the ‘boarmiine’ lineage, and Macariini were recovered as sister to Abraxini, Eutoeini and Cassymini.

Complete mitochondrial genomes throw light on budding speciation in three Biston species (Lepidoptera, Geometridae)

Biston panterinaria, Biston thibetaria and Biston perclara are very closely related species in the genus Biston, judged on the basis of both morphological and molecular evidence. The distribution area and altitudes, and host plants of these three species also show both consistency and differences. However, the exact relationship between the three species is unclear. In this study, we used the ‘distance‐based method’, the ‘tree‐based method’ and Bayesian phylogenetics and phylogeography to elucidate the relationship between the three species. Phylogenetic trees based on mitogenomes, COI+CYTB+16S and three nuDNA genes were constructed. The results of the phylogenetic trees revealed that B. thibetaria and B. perclara were derived from B. panterinaria and render the latter paraphyletic. The budding process of speciation is therefore presumed to be the main factor causing a phylogenetic relationship of this pattern. A host shift from broad‐leaved plants living at low altitudes to gymnosperms living at relatively high altitudes provides evidence of budding speciation in these three species. The divergence time suggests that the budding speciation occurred at approximately 1.38 Ma, which is consistent with the Kunlun‐Yellow River Movement. Tectonic movements occurring around the Qinghai–Tibet Plateau may be the driver of the budding speciation.

Allopatric divergence and secondary contact without genetic admixture for Arichanna perimelaina (Lepidoptera: Geometridae), an alpine moth endemic to the Hengduan Mountains

Mountain systems, especially at high altitudes, are an excellent model for determining the mechanisms underlying high species diversity and endemism. Herein, we elucidate the evolutionary history of the alpine moth Arichanna perimelaina (Wehrli), which is endemic to the Hengduan Mountains (HM) region in southwest China, based on three mitochondrial genes and two nuclear genes. Our results revealed six deeply divergent clades that corresponded to populations in different mountain systems in the HM region. Bayesian divergence time estimations suggested a mid‐ to late Pleistocene genetic divergence. The results also showed that the Mt Yulong (YL) region was a refugium and valley corridors established by glaciation during the Pleistocene allowed populations on the separate mountains to migrate. The reproductive isolation among the different clades on contact zone in the YL region may be associated with the asynchronous mating rhythms and/or the divergent mate recognition caused by the ecological source of divergent selection. Allopatric divergence associated with complex topographies and climatic oscillations, regional dispersal via valley corridors and the suitable refugium of the YL region shaped the genetic divergence and distribution pattern of A. perimelaina in the HM region. These findings highlight the essential role of complex terrain and climatic fluctuations in shaping the unique phylogeographic history of a narrow alpine moth, and provide insights into the mechanisms underlying high species richness and endemism in the HM region.

The evolutionary history of Biston suppressaria (Guenée) (Lepidoptera: Geometridae) related to complex topography and geological history

The Mountains of Southwest China (MSC) – the most important mountain system in East Asia – creates physical barriers to migration and isolates organisms in different regions. In this study, we explored the genetic structure and phylogeography of Biston suppressaria, a moth species widely distributed in MSC and south China, based on three mtDNA and three ncDNA loci. MtDNA revealed high genetic differentiation among the geographical populations and divided B. suppressaria into five phylogroups (A–E). With the exception of phylogroups B and E which are sympatric, the other three phylogroups have their own distinct distribution areas. Four population differentiations occurred, and the divergence time was consistent with the three phases of the Qinghai–Tibet Movement and Kunhuang Movement, respectively. In contrast, ncDNA did not reveal any phylogeographical structure. Incomplete lineage sorting is considered the most plausible cause of the discordance between mtDNA and ncDNA genes, after excluding secondary admixture and Wolbachia infection. A complex combination of topography and geological movements of south China and MSC contributes to the complex evolutionary history of B. suppressaria.

A review of Problepsis Lederer, 1853 (Lepidoptera: Geometridae) from China, with description of two new species

The Chinese species of the genus Problepsis Lederer, 1853 are reviewed: 18 species are reported from China. Two new species, P. stueningi sp. nov. and P. batangnensis sp. nov. are described. One new combination is established: Problepsis transvehens (Prout, 1918) comb. nov. Two new synonyms are established: P. conjunctiva conjunctiva Warren, 1893 (= P. conjunctiva subjunctiva Prout, 1917 syn. n.), Problepsis discophora Fixsen, 1887 (= P. changmei Yang, 1978 syn. n.). Two species, P. plagiata (Butler, 1881) and P. apollinaria (Guenée, 1858), and one subspecies, P. discophora kardakoffi Prout, 1938, are newly recorded for China. Diagnoses for all discussed Chinese species are provided. External features and genitalia are depicted.

One new species and one new record for the genus Ninodes Warren from China (Lepidoptera, Geometridae, Ennominae)

Abstract A new species of the genus Ninodes Warren, N. quadratus sp. n., is described from China and compared with related species, based on numerous museum specimens. N. albarius Beljaev & Park, 1998, described from Korea, is newly recorded for China. Illustrations of external features and genitalia for each species of Ninodes are presented.

Revision of the genus Metaterpna Yazaki, 1992 (Lepidoptera, Geometridae, Geometrinae), with description of a new species from China

The genus Metaterpna is revised. The two species known, M. differens (Warren, 1909) and M. thyatiraria (Oberthür, 1913), are redescribed, with emphasis on the considerable variability of M. thyatiraria, and the status of the related type specimen was discussed. In addition, one new species, M. batangensis sp. nov., is described from Batang and Daocheng, Sichuan province, and Lijiang, Yunnan province, southwestern China. M. thyatiraria and M. batangensis show clear distance by DNA barcode sequences. Illustrations of moths and genitalia are presented.