Debabrata Dhara

Major Reaction Coordinates Linking Transient Amyloid-β Oligomers to Fibrils Measured at Atomic Level

The structural underpinnings for the higher toxicity of the oligomeric intermediates of amyloidogenic peptides, compared to the mature fibrils, remain unknown at present. The transient nature and heterogeneity of the oligomers make it difficult to follow their structure. Here, using vibrational and solid-state nuclear magnetic resonance spectroscopy, and molecular dynamics simulations, we show that freely aggregating Aβ40 oligomers in physiological solutions have an intramolecular antiparallel configuration that is distinct from the intermolecular parallel β-sheet structure observed in mature fibrils. The intramolecular hydrogen-bonding network flips nearly 90°, and the two β-strands of each monomeric unit move apart, to give rise to the well-known intermolecular in-register parallel β-sheet structure in the mature fibrils. Solid-state nuclear magnetic resonance distance measurements capture the interstrand separation within monomer units during the transition from the oligomer to the fibril form. We further find that the D23-K28 salt-bridge, a major feature of the Aβ40 fibrils and a focal point of mutations linked to early onset Alzheimers disease, is not detectable in the small oligomers. Molecular dynamics simulations capture the correlation between changes in the D23-K28 distance and the flipping of the monomer secondary structure between antiparallel and parallel β-sheet architectures. Overall, we propose interstrand separation and salt-bridge formation as key reaction coordinates describing the structural transition of the small Aβ40 oligomers to fibrils.

Stepwise Reversible Oxidation of N-Peralkyl-Substituted NHC–CAAC Derived Triazaalkenes: Isolation of Radical Cations and Dications

Herein, the isolation and characterization of N-peralkyl-substituted NHC-CAAC derived triazaalkenes in three oxidation states, neutral, radical cation, and dication, are reported. Cyclic voltammetry has shown the reversible electronic coupling between the first and second oxidation to be ΔE1/2 = 0.50 V. As a proof-of-principle, to demonstrate the electron-rich nature of the triazaalkene, it was shown that it can be used as an electron donor in the reduction of an aryldiazonium salt to the corresponding arene.

Mono- and Dicoordinate Germanium(0) as a Four-Electron Donor

We report the synthesis and isolation of molecular iron germanide motifs in the stoichiometry of Fe3 Ge and Fe2 Ge, which are stabilized by the coordination of N-heterocyclic carbene (NHC) and carbon monoxide (CO) ligands. NHCiPr2Me2 ⋅Ge[Fe(CO)4 ][Fe2 (CO)8 ] (NHCiPr2Me2 =1,3-diisopropyl-4,5-dimethylimidazol-2-ylidene), a germanium(0) ligand with just one NHC as an auxiliary ligand, assumes a bridging coordination mode between a mononuclear [Fe(CO)4 ] and a dinuclear [(CO)4 FeFe(CO)4 ] unit with rapid exchange between the two binding modes in solution. The electronic structure of this species is analysed by NBO and ELF calculations with DFT methods, as well as the mechanistic details of its fluxional coordination behaviour. Treatment of NHCiPr2Me2 ⋅Ge[Fe(CO)4 ] [Fe2 (CO)8 ] with the sterically less demanding NHCMe4 (NHCMe4 =1,3,4,5-tetramethylimidazol-2-ylidene) leads to a dinuclear iron complex (NHCMe4 )2 Ge[Fe(CO)4 ]2 that contains a bridging germylone ligand with two stabilizing NHC equivalents.

CCDC 1509723: Experimental Crystal Structure Determination

Related Article: Debabrata Dhara, Debdeep Mandal, Avijit Maiti, Cem B. Yildiz, Pankaj Kalita, Nicolas Chrysochos, Carola Schulzke, Vadapalli Chandrasekhar, Anukul Jana||Dalton Trans.|||doi:10.1039/C6DT04321F

CCDC 1509722: Experimental Crystal Structure Determination

Related Article: Debabrata Dhara, Debdeep Mandal, Avijit Maiti, Cem B. Yildiz, Pankaj Kalita, Nicolas Chrysochos, Carola Schulzke, Vadapalli Chandrasekhar, Anukul Jana||Dalton Trans.|||doi:10.1039/C6DT04321F