Deepak Ohri

Phylogenetic relationships of Cajanus cajan (L.) Millsp. (pigeonpea) and its wild relatives based on seed protein profiles

Total seed storage protein of 9 accessions of cultivated C. cajan and 10 wild Cajanus species was reported and compared by sodium dodecyl sulphate polyacrylamide gel electrophoresis. A considerable variation was detected among the protein profiles of different accessions of C. cajan while those of wild species were very specific and distinctly different from each other. Relative similarities between various taxa were estimated by Jaccards similarity index and cluster analysis was performed to produce a UPGMA dendrogram. The clustering of 10 wild species and C. cajan more or less agrees with their sectional classification and available data based on morphological characteristics, crossability, genome pairing in hybrids and nuclear RFLPs. The species closest to C. cajan is C. cajanifolia although the accessions of C. cajan also share some bands present in the profiles of C. scarabaeoides, C. goensis, C. lineatus, C. acutifolius and C. volubilis. This points towards polyphyletic origin of the cultigen which has been discussed in this paper.

Nuclear DNA Amounts in Some Tropical Hardwoods

SUMMARY2C-DNA values of 44 tropical hardwood species belonging to 20 families depict a range from 0.94 pg to 7.39 pg, an 8-fold difference. Likewise there is a 10-fold variation in per chromosome DNA values. The narrow range of variation as also the small genome size in tropical hardwoods have been discussed.

Genetic Diversity for Morphological and Quality Traits in Quinoa( Chenopodium quinoa Willd.) Germplasm

Twenty nine germplasm lines of Chenopodium quinoa and two of Chenopodium berlandieri subsp. nuttalliae were evaluated for 12 morphological and 7 quality traits for two test seasons. The 19 traits were analyzed for cluster and principal component analysis. The first four PCs contributed 78.70 % of the variability among the germplasm lines. The first PC accounted for 39.5% of the variation and had inflorescence/plant, plant height and stem diameter as the traits with largest coefficients, all with positive sign. The characters with greatest positive weight on PC2 were days to maturity (0.309), inflorescence length (0.260) and branches/plant. All the germplasm lines were grouped into six clusters based on average linkage method. Cluster III had high values for seed yield and most of the quality traits but showed a small seed size. The dendrogram separated the two lines of C. berlandieri subsp. nuttalliae from the quinoa lines.

Karyotypic Studies on Some Cultivated and Wild Species of Chenopodium (Chenopodiaceae)

Detailed karyotypic studies have been done in 20 wild and cultivated taxa of Chenopodium, which belong to three ploidy levels 2x, 4x and 6x. C. quinoa (4x) shows minor but consistent differences in the arm ratio of various chromosomes within the complements of different accessions. The chromosomes can be arranged in 18 pairs that suggest allotetraploid nature. The karyotype of C. berlandieri subsp. nuttalliae (4x) is basically similar to that of C. quinoa. C. bushianum (6x) is distinctly different from the above two species in showing highest ratio between longest and shortest chromosomes. C. album complex is characterized by consisting of 2x, 4x and 6x cytotypes. Marked karyotypic differentiation is seen even among various 2x accessions. The 4x cytotype has a more asymmetrical karyotype as compared with 2x and 6x cytotypes. The karyotypic differences are also apparent between two 6x cytotypes studied. C. strictum (6x) and C. giganteum (6x) show close similarity to 6x types of C. album.

Seed protein electrophoresis of some cultivated and wild species of Chenopodium

Seed protein profiles of 40 cultivated and wild taxa of Chenopodium have been compared by sodium dodecyl sulfate polyacrylamide gel electrophoresis. The relative similarity between various taxa, estimated by Jaccard’s similarity index and clustered in UPGMA dendrogram, is generally in accordance with taxonomic position, crossability relationships and other biochemical characters. Eight accessions of C. quinoa studied are clustered together and show genetic similarity with closely related C. bushianum and C. berlandieri subsp. nuttalliae. The taxa included under C. album complex are clustered in two groups which show that these taxa are a heterogenous assemblage and their taxonomic affinities need a reassessment. Other wild species studied are placed in the dendrogram more or less according to their taxonomic position.

Chenopodium: a prospective plant for phytoextraction

Leaf samples were collected from 40 accessions of Chenopodium spp. and assessed for six heavy metals (Fe, Zn, Cu, Ni, Cr and Cd) accumulation to explore the use of Chenopodium for phytoextraction of heavy metals. The results suggest that Chenopodium spp. have the ability to accumulate large quantities of heavy metals in the leaf tissues even when they are present in low concentrations in the soil. C. quinoa is a better accumulator of Ni, Cr and Cd than the rest of the species, while C. album accessions are good copper accumulators. Bioconcentration factor for chromium ranged from 0.36 (C. album “Chandanbathua”) to 6.57 (C. quinoa Ames 13719) with 13 accessions of C. quinoa scoring above the mean value. High heritability coupled with high genetic advance was recorded for Ni, Cr and Cd, which indicated a major role of additive gene action in the inheritance of these characters. Zinc showed significant positive association with iron (0.351**), nickel (0.659**), chromium (0.743**) and cadmium (0.288**). Nickel was significantly and negatively associated with copper (−0.663**), while it was positively and significantly correlated with chromium (0.682**) and cadmium (0.461**). Considering the accumulation efficiency of Chenopodium spp. with respect to heavy metals, this genus should be further explored for decontamination of metal polluted soils, with plant breeding playing an important role in evolving new plant types with higher capacity of heavy metal accumulation.

Impact of mutagenesis on cytological behavior in relation to specific alkaloids in Opium Poppy (Papaver somniferum L.)

Abstract The present study was an effort to identify appropriate dose of mutagens for the elevation of specific alkaloids especially thebaine through induced mutagenesis in opium poppy (P. somniferum L.) using two stable high yielding varieties NBRI-1 and NBRI-5. Simultaneously, the study also deals correlation between cytological aberrations and their effects on alkaloid quantity. Among the two varieties NBRI-1 was more sensitive than NBRI-5. The EMS was reported most potent mutagen for creation of chromosomal abnormalities. The treatment kR 10+0.2% EMS and kR10+0.4% EMS possessed high chiasms frequency. The dose 0.2% EMS in combinations with all doses of gamma accelerates the total alkaloid as well as individual alkaloid content.

Genome size variation in some cultivated and wild species of Chenopodium (Chenopodiaceae)

Abstract The 4C DNA amounts of 54 taxa of Chenopodium measured by Feulgen densitometry showed 7.91-fold variation ranging from 1.25 pg (C. aristatum, 2x) to 9.89 pg (C. album PI 433379, 6x). The genome size varied only 2.65-fold from 0.31 pg (C. aristatum, 2x) to 9.82 pg (C. album ‘Chandigarh’, 4x). No intraspecific differences were found among 21 accessions of C. quinoa and 5 accessions of C. giganteum. However, 6x accessions of C. album originating from India showed significant differences as compared to those from Europe and America. The DNA amounts of various taxa conform to their systematic position.

Molecular differentiation of Chenopodium album complex and some related species using ISSR profiles and ITS sequences.

The present study was undertaken to understand the genetic differentiation and relationships in various components of C. album complex, C. giganteum and some related species using inter simple sequence repeats (ISSR) profiles and internal transcribed spacer (ITS) sequences. The relationships based on UPGMA dendrograms have shown the heterogenous nature of C. album complex. The 2x taxa while showing close relation among themselves are sharply segregated from 4x and 6x taxa belonging to C. album and C. giganteum. Among the three cytotypes from North Indian plains the 4x shows greater similarity to 6x than to 2x which is corroborated by the karyotypic studies. Furthermore, the 6x C. album and C. giganteum accessions of American and European origin are clearly segregated from those of Indian origin which may show their separate origin. Other related species show relationships according to their taxonomic position. The present study based on ISSR profiles and ITS sequences has therefore been very useful in explaining the relationships between various components of C. album complex and related species. However, more work needs to be done using different CpDNA loci to define correct species boundary of the taxa under C. album complex from Himalayas and North Indian Plains.

Karyotypic and genome size variation in Cajanus cajan (L.) Millsp. (pigeonpea) and some wild relatives

Detailed karyotypes and 4C DNA amounts have been studied in five cultivars of Cajanus cajan and 20 species belonging to Cajanus, Rhynchosia, Dunbaria, Flemingia and Paracalyx. C. cajan shows intraspecific variability and its karyotype is most similar to that of C. cajanifolius (sect. Cajanus) in the morphology and number of satellite chromosomes and the lack of any correlation between chromosome size within the complement and asymmetry. Karyotypes of C. lineatus and C. sericeus belonging to sect. Atylia are similar with respect to maximum r-index and the ratio of longest and shortest chromosomes in their respective complements. C. acutifolius (sect. Frutocosa) is distinct in having a very low ratio (1.44) between the longest and the shortest chromosomes, while in C. albicans, C. goensis, C. scarabaeoides (sect. Cantharospermum) there is no chromosome pair with r-index >2.0. C. mollis and C. volubilis (sect. Volubilis) show similarity with regard to ratio between the longest and the shortest chromosomes and a distinct chromosome pair with an arm ratio of 2.7 and C. platycarpus is distinct (sect. Rhynchosoides) in having the smallest ratio (1.36) between the longest and the shortest chromosomes. 4C DNA amounts in Cajanus and Rhynchosia vary between 3.28 pg to 11.69 pg and 4.92 pg to 11.13 pg respectively, while in Dunbaria, Flemingia and Paracalyx these vary between 4.70 and 7:06 pg. In the genus Cajanus karyotypic features and 4C DNA amounts agree with the sectional classification and bring out a close relationship between C. cajan and C. cajanifolius. This is supported by studies based on seed protein patterns, isozyme analysis, trypsin and chymotrypsin inhibitor patterns, RFLP and RAPD data and crossability relationships. A clear relation between DNA amount and abnormalities effecting the extent of pairing and recombination in interspecific hybrids shows the importance of this study in developing future breeding programme involving C. cajan and its wild relatives that are of potential value.