Denis Gerlier

Interplay between Innate Immunity and Negative-Strand RNA Viruses: towards a Rational Model

SUMMARY The discovery of a new class of cytosolic receptors recognizing viral RNA, called the RIG-like receptors (RLRs), has revolutionized our understanding of the interplay between viruses and host cells. A tremendous amount of work has been accumulating to decipher the RNA moieties required for an RLR agonist, the signal transduction pathway leading to activation of the innate immunity orchestrated by type I interferon (IFN), the cellular and viral regulators of this pathway, and the viral inhibitors of the innate immune response. Previous reviews have focused on the RLR signaling pathway and on the negative regulation of the interferon response by viral proteins. The focus of this review is to put this knowledge in the context of the virus replication cycle within a cell. Likewise, there has been an expansion of knowledge about the role of innate immunity in the pathophysiology of viral infection. As a consequence, some discrepancies have arisen between the current models of cell-intrinsic innate immunity and current knowledge of virus biology. This holds particularly true for the nonsegmented negative-strand viruses (Mononegavirales), which paradoxically have been largely used to build presently available models. The aim of this review is to bridge the gap between the virology and innate immunity to favor the rational building of a relevant model(s) describing the interplay between Mononegavirales and the innate immune system.

Rapid Titration of Measles and Other Viruses: Optimization with Determination of Replication Cycle Length

Background Measles virus (MV) is a member of the Paramyxoviridae family and an important human pathogen causing strong immunosuppression in affected individuals and a considerable number of deaths worldwide. Currently, measles is a re-emerging disease in developed countries. MV is usually quantified in infectious units as determined by limiting dilution and counting of plaque forming unit either directly (PFU method) or indirectly from random distribution in microwells (TCID50 method). Both methods are time-consuming (up to several days), cumbersome and, in the case of the PFU assay, possibly operator dependent. Methods/Findings A rapid, optimized, accurate, and reliable technique for titration of measles virus was developed based on the detection of virus infected cells by flow cytometry, single round of infection and titer calculation according to the Poissons law. The kinetics follow up of the number of infected cells after infection with serial dilutions of a virus allowed estimation of the duration of the replication cycle, and consequently, the optimal infection time. The assay was set up to quantify measles virus, vesicular stomatitis virus (VSV), and human immunodeficiency virus type 1 (HIV-1) using antibody labeling of viral glycoprotein, virus encoded fluorescent reporter protein and an inducible fluorescent-reporter cell line, respectively. Conclusion Overall, performing the assay takes only 24–30 hours for MV strains, 12 hours for VSV, and 52 hours for HIV-1. The step-by-step procedure we have set up can be, in principle, applicable to accurately quantify any virus including lentiviral vectors, provided that a virus encoded gene product can be detected by flow cytometry.

Enhancement of in vivo and in vitro T cell response against measles virus haemagglutinin after its incorporation into liposomes: effect of the phospholipid composition

Artificial phospholipid bilayer vesicles were tested for their capacity to enhance the priming and the restimulation of mouse T cells against the haemagglutinin (H) glycoprotein of the measles virus in vivo and in vitro. H glycoprotein was purified and incorporated into liposomes made of cholesterol, dicetylphosphate and dilauroylphosphatidylcholine (DLPC) or distearoylphosphatidylcholine (DSPC). H in DLPC or DSPC-liposomes was found to be a potent in vivo stimulator of lymph node T cells harvested from mice immunized with measles virus, whereas H glycoprotein in free form did not elicit any proliferative T cell response. When used to immunize naive mice, only H in DSPC-liposomes was able to prime T cells as evidenced by the capacity of lymph node cells to proliferate in the presence of H in liposomes or measles virus as secondary stimulating agents in vitro. H-specific T cell clones derived from animals immunized with H in DSPC-liposomes were able to recognize H glycoprotein both in free form and incorporated into liposomes in the presence of naive spleen cells as APC. However, compared with the liposome forms, 20-fold more H protein in free form was required to elicit a T cell clone response at a similar level. This liposome immune enhancing effect on the T cell clone recognition of H glycoprotein was also observed when peritoneal exudate cells were used as APC. These data demonstrate that the insertion of a membrane-derived antigen into artificial membranes may be a prerequisite for the priming and stimulation of specific T cells both in vivo and in vitro. In addition, the nature of the phospholipid used to build the liposomes appears to be a critical parameter.

Can one predict antigenic peptides for MHC class I-restricted cytotoxic T lymphocytes useful for vaccination?

The cytotoxic T-lymphocyte (CTL) response can be crucial for efficient immunological control of intracellular pathogens and the MHC class I-restricted CTL have a major role to play in this process. They recognize complexes associating antigen-derived peptides with MHC class I molecules expressed on infected target cells. The characterization of these antigenic peptides is thus a key issue for developing vaccines efficient in inducing specific CTL. Recently, by sequencing the whole set of self-peptides eluted from a given MHC class I molecule, Falk and colleagues have found that they have a homogeneous 8-10 residue length and contain allele-specific peptidic motifs with two conservative dominant anchor residues. The existence of consensus motifs opens the way for a strategy to predict the MHC class I-restricted T-cell epitopes and here we discuss such an approach using hen egg lysozyme (HEL) as an antigenic model. Two HEL peptides corresponding to allele-specific motifs were found, HEL(49-56) and HEL(70-78) peptides, which can associate with MHC class I H-2Kb and H-2Db molecules, respectively. The HEL peptide HEL(70-78) was found to be able to induce HEL-specific CTL in H-2b mice also. Moreover, using an empiricial approach, we have also characterized the N-terminal HEL(1-17) peptide as an immunodominant antigenic peptide in the H-2k haplotype. This peptide presented by H-2Kk molecules neither contained the corresponding allele-specific binding motif nor fitted the expected 8-10 residue length.(ABSTRACT TRUNCATED AT 250 WORDS)

Critical residue combinations dictate peptide presentation by MHC class II molecules

Peptides encompassing the core hen egg lysozyme HEL(52-61) peptide elongated or not and substituted or not with natural and unnatural amino acids were used to find a peptide motif for binding to the major histocompatibility complex (MHC) class II I-Ak. Using a T-cell recognition functional assay, nine out of 10 positions were found to be somehow involved in the I-Ak binding, and six out of 10 residues were involved in T-cell recognition. The deleterious effect of single substitutions could be rescued by changing peptide length and/or sequence. Thus, efficient binding to MHC class II molecules requires not only few anchoring residues correctly interspaced, but a complex, nonrandom combination of residues with appropriate orientation of the peptide backbone and some crucial side chains.

Structure of the measles virus H glycoprotein sheds light on an efficient vaccine.

Prevention by vaccination is the most efficient and economical way of fighting viral disease, as exemplified by the successful eradication of smallpox in the late 1980s. In the 1960s, many attenuated vaccines were developed, and such vaccines are among the most efficient for preventing human (such as smallpox and measles) and animal disease. Attenuated vaccines have been empirically obtained by growing viruses in various cell types, including cells from species that are not naturally infected. However, development of successful vaccines against many other enveloped viruses has found limited success (influenza) or still awaits convincing proof of concept (HIV). Both influenza and HIV escape neutralizing immunity by mutating the coding regions of their envelope glycoproteins to escape from recognition by neutralizing antibodies. The underlying molecular mechanism, i.e., why measles virus behaves monotypically from the point of view of the immune response, has now been elucidated with the crystal structure of the viral H glycoprotein (1).

Mutation of the TYTLE motif in the cytoplasmic tail of the sendai virus fusion protein deeply affects viral assembly and particle production.

Enveloped viruses contain glycoproteins protruding from the viral membrane. These proteins play a crucial role in the extra-cellular steps of the virus life cycle, namely attachment to and entry into cells. Their role during the intracellular late phase of virus multiplication has been less appreciated, overlooked by the documented central organizer role of the matrix M protein. Sendai virus, a member of the Paramyxoviridae family, expresses two trans-membrane proteins on its surface, HN and F. In previous work, we have shown that suppression of F in the context of an infection, results in about 70% reduction of virus particle production, a reduction similar to that observed upon suppression of the matrix M protein. Moreover, a TYTLE motif present in F cytoplasmic tail has been proposed essential for virus particle production. In the present work, using original alternate conditional siRNA suppression systems, we generated a double F gene recombinant Sendai virus expressing wt-F and a nonviable mutated TYTLE/5A F protein (F5A). Suppression of the wild type F gene expression in cells infected with this virus allowed the analysis of F5A properties in the context of the infection. Coupling confocal imaging analysis to biochemical characterization, we found that F5A i) was not expressed at the cell surface but restricted to the endoplasmic reticulum, ii) was still capable of interaction with M and iii) had profound effect on M and HN cellular distribution. On the basis of these data, we propose a model for SeV particle formation based on an M/F complex that would serve as nucleation site for virus particle assembly at the cell surface.

An ultraweak interaction in the intrinsically disordered replication machinery is essential for measles virus function

NMR shows how an intrinsically disordered protein controls replication of measles virus via a dynamic weakly interacting complex. Measles virus genome encapsidation is essential for viral replication and is controlled by the intrinsically disordered phosphoprotein (P) maintaining the nucleoprotein in a monomeric form (N) before nucleocapsid assembly. All paramyxoviruses harbor highly disordered amino-terminal domains (PNTD) that are hundreds of amino acids in length and whose function remains unknown. Using nuclear magnetic resonance (NMR) spectroscopy, we describe the structure and dynamics of the 90-kDa N0PNTD complex, comprising 450 disordered amino acids, at atomic resolution. NMR relaxation dispersion reveals the existence of an ultraweak N-interaction motif, hidden within the highly disordered PNTD, that allows PNTD to rapidly associate and dissociate from a specific site on N while tightly bound at the amino terminus, thereby hindering access to the surface of N. Mutation of this linear motif quenches the long-range dynamic coupling between the two interaction sites and completely abolishes viral transcription/replication in cell-based minigenome assays comprising integral viral replication machinery. This description transforms our understanding of intrinsic conformational disorder in paramyxoviral replication. The essential mechanism appears to be conserved across Paramyxoviridae, opening unique new perspectives for drug development against this family of pathogens.

Virus-driven conditional expression of an interferon antagonist as a tool to circumvent host restriction

Hosts and viruses are under a constant coevolution pressure. Schematically, a virus (as a population) requires a permanent supply of naive hosts to continue to exist, and survival of the host population relies on its ability to develop antiviral defenses. Severe acute respiratory syndrome coronavirus, Henipaviruses (Hendra and Nipah) and filoviruses (Ebola and Marburg) are apt examples. On the one hand, they benignly colonize bats to survive, and on the other hand, thanks to the use of highly conserved cellular receptors (1), they are deadly pathogens for several other mammals, including humans, in which they induce self-extinguishing local epidemics. The virus and host coevolution can narrow down to a virus reservoir limited to a single animal species as illustrated by measles virus (MeV), a human-only pathogen. In the absence of an animal reservoir, the survival of MeV relies on its access to human populations large enough to allow an unbroken chain of acute infections (2). Measles, a major childhood killer disease of the prevaccination era, is attributable to an acute infection by one of the most highly contagious human pathogens. Virus transmission is limited because of the short time window during which infected individuals are contagious and because of the lifelong sterilizing immunity that MeV induces. Since the identification of CD46/membrane cofactor protein (MCP) (1993) and CD150/signalling lymphocyte-activation molecule (SLAM) (2000) as receptors mediating MeV entry into human cells, several transgenic mouse models of measles disease have been developed. However, these poorly reproduce the human disease, with viral dissemination observed only in mouse neonates. The mouse interferon (IFN) system appears to be a major host-restriction parameter because only human receptor transgenic mice with a disabled IFN system show susceptibility to MeV infection (3). However, in PNAS, Iwasaki and Yanagi (4) present an original strategy to overcome IFN-mediated restriction in mouse cells.