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Featured researches published by Derya Topkaya.


Journal of Analytical Chemistry | 2010

Fluorescence study on the interaction of bovine serum albumin with two coumarin derivatives

N. Akbay; Derya Topkaya; Yavuz Ergun; Serap Alp; E. Gök

The interactions between bovine serum albumin (BSA) and two substituted hydroxychromone derivatives of coumarin, 3-hydroxy-7,8,9,10-tetrahydro-6H-benzo[c]chromen-6-on (C3) and 1,3-dihydroxy-7,8,9,10-tetrahy-dro-6H-benzo[c]chromen-6-on (C1.3), were investigated by fluorescence quenching spectra and UV-vis absorption spectra. It was proved that the fluorescence quenching of BSA by C3 and C1, 3 was mainly a result of the formation of C3 and C1.3-BSA complexes. The Stern-Volmer quenching constants, binding constants, binding sites and the corresponding thermodynamic parameters ΔHo, ΔSo and ΔGo at different temperatures were calculated. The results indicated that van der Waals interactions and hydrogen bonds were the predominant intermolecular forces in stabilizing each complex. The detection limits of C3 and C1.3 were 5.08 × 10−7 and 1.11 × 10−7 M in the presence of BSA, respectively.


Journal of Porphyrins and Phthalocyanines | 2015

Modulation of singlet oxygen generation and amphiphilic properties of trihydroxylated monohalogenated porphyrins

Derya Topkaya; Philippe Arnoux; Fabienne Dumoulin

Two of the properties important for photodynamic therapy applications are systematically investigated on a trihydroxylated monohalogenated porphyrin core. Singlet oxygen generation can be increased thanks to the heavy atom effect, frequently provided by the introduction of halogen atoms on the photosensitizer. We compare the effect of the presence of the four halogen atoms with the analogous halogen-free porphyrin. Cell uptake is crucial as well for successful photodynamic outcome and is directly related to the amphiphilicity of the molecule. The five derivatives bearing H, F, Cl, Br or I atoms are compared in this regard. The presence of iodine atom induces a sharp difference in singlet oxygen generation compared to all the other derivatives investigated, but increases its lipophilicity, still in the limits suitable for biomedical applications.


Photodiagnosis and Photodynamic Therapy | 2016

Iodination improves the phototoxicity of an amphiphilic porphyrin

Derya Topkaya; Shie Yin Ng; Yann Bretonnière; Dominique Lafont; Lip Yong Chung; Hong Boon Lee; Fabienne Dumoulin

University of Dokuz Eylul, Department of Chemistry, Faculty of Science, 35160, Tinaztepe, Izmir, Turkey Department of Pharmacy, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia ENS Lyon, Universite de Lyon, Laboratoire de Chimie de l’ENS Lyon, UMR 5182 CNRS-ENS Lyon, 46 allee d’Italie, 69364 Lyon, France Institut de Chimie et Biochimie Moleculaires et Supramoleculaires, CO2-Glyco, UMR 5246, CNRS, Universite Claude Bernard Lyon 1, Universite de Lyon, 43 oulevard du 11 Novembre 1918, F-6922 Villeurbanne, France Gebze Technical University, Department of Chemistry, P.O. Box 141, 41400 Gebze, Kocaeli, Turkey


Journal of Porphyrins and Phthalocyanines | 2016

Phthalocyanine-chalcone conjugates

Fallia Aribi; Charlene Vey; Derya Topkaya; Sinem Tuncel Kostakoğlu; Jérémie Fournier-dit-Chabert; Sebile Işık Büyükekşi; Gökçe Canan Taşkın; Serkan Alpugan; Florian Albrieux; Ayşe Gül Gürek; Mélissa Cucca; Khalil Bennis; Devrim Atilla; Vefa Ahsen; Sylvie Ducki; Fabienne Dumoulin

A phthalocyanine-chalcone conjugate was previously reported to retain the full photodynamic activity of the phthalocyanine and a slightly lowered antivascular effect of the chalcone. Assuming that it was due to an insufficient release of the chalcone, we described here several grafting modes applied to the preparation of phthalocyanine-chalcone conjugates.


Journal of Porphyrins and Phthalocyanines | 2017

Zn phthalocyanine conjugation to H2-ul aptamer for HER2-targeted breast cancer photodynamic therapy: Design, optimization and properties

Serkan Alpugan; Derya Topkaya; Devrim Atilla; Vefa Ahsen; Javed H. Niazi; Fabienne Dumoulin

Tetrasulfonated Zn phthalocyanine was conjugated to a ssDNA aptamer moiety to produce a HER2 targeted photosensitizer. The tetraconjugate obtained was subjected to purification and the monoconjugate was successfully isolated, purified and characterized. This monoconjugate retained the ability to bind to HER2 as well as the potency to generate singlet oxygen.


Journal of Porphyrins and Phthalocyanines | 2016

Covalent or supramolecular combinations of resorcinarenes and porphyrinoids

Fabienne Dumoulin; Derya Topkaya; Songuel Yasar; Vefa Ahsen; Uemit Isci

Cavitands and porphyrinoids are two major groups of molecules. If cyclodextrins are maybe the most famous type of cavitands, the properties of resorcinarenes are now well known and rise rapidly increasing attention. This mini-review aims at detailing all the combinations of resorcinarenes with porphyrinoids reported so far, evidencing the bright future of such combos. In addition, two newly synthesized porphyrins-resorcinarene hybrids are reported.


Journal of Porphyrins and Phthalocyanines | 2017

Disulfide-bridge dimeric porphyrin and their reference compounds for glutathione-based specific tumor-activation

Serkan Alpugan; Derya Topkaya; Fabienne Dumoulin

The tumor micro-environment is rich in glutathione. To exploit this feature for tumor-activatable porphyrin-based photosensitizers, a dimeric disulfide-bridged porphyrin has been designed and prepared, together with two reference derivatives, a non-cleavable dimer and a monomer. The three compounds have been investigated from a photochemical and photophysical point of view. It appears that the disulfide-bridged derivative exhibited intramolecular aggregation, but to an insufficient extent to induce a satisfying self-quenching of its photoproperties. Unlike expected, the non-cleavable dimer behaved like the monomeric derivative, due to the superior flexibility of the alkyl bridge over the disulfide bridge.


Analytical and Bioanalytical Chemistry | 2006

Emission-based optical carbon dioxide sensing with HPTS in green chemistry reagents: room-temperature ionic liquids

Ozlem Oter; Kadriye Ertekin; Derya Topkaya; Serap Alp


Sensors and Actuators B-chemical | 2006

Room temperature ionic liquids as optical sensor matrix materials for gaseous and dissolved CO2

Ozlem Oter; Kadriye Ertekin; Derya Topkaya; Serap Alp


Mikrochimica Acta | 2008

Emission based oxygen sensing approach with tris(2,2′-bipyridyl)ruthenium(II)chloride in green chemistry reagents: room temperature ionic liquids

Sevinc Zehra Topal; Kadriye Ertekin; Derya Topkaya; Serap Alp; Berrin Yenigul

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Fabienne Dumoulin

Gebze Institute of Technology

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Serap Alp

Dokuz Eylül University

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Vefa Ahsen

Gebze Institute of Technology

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Serkan Alpugan

Gebze Institute of Technology

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Devrim Atilla

Gebze Institute of Technology

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Ozlem Oter

Dokuz Eylül University

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Yavuz Ergun

Dokuz Eylül University

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