Dimitri D. Deheyn

Bio-Inspired Structural Colors Produced via Self-Assembly of Synthetic Melanin Nanoparticles

Structural colors arising from interactions of light with submicron scale periodic structures have been found in many species across all taxa, serving multiple biological functions including sexual signaling, camouflage, and aposematism. Directly inspired by the extensive use of self-assembled melanosomes to produce colors in avian feathers, we set out to synthesize and assemble polydopamine-based synthetic melanin nanoparticles in an effort to fabricate colored films. We have quantitatively demonstrated that synthetic melanin nanoparticles have a high refractive index and broad absorption spanning across the UV-visible range, similar to natural melanins. Utilizing a thin-film interference model, we demonstrated the coloration mechanism of deposited films and showed that the unique optical properties of synthetic melanin nanoparticles provide advantages for structural colors over other polymeric nanoparticles (i.e., polystyrene colloidal particles).

Endogenous green fluorescent protein (GFP) in amphioxus.

remains to be learned about the taxonomic distribution and biological function of these proteins in nature. To date, GFPs have been found in only two major groups in the metazoan tree: specifically, in a number of cnidarians, rel atively near the base of the tree, and in a few copepod crustaceans, relatively derived within the protostome branch (2, 3). The cnidarian GFPs are often associated with biolu minescence, but those found so far in copepods are not. We now report that the limited taxonomic distribution of ani mals with endogenous GFPs may be partially due to inad equate sampling efforts, because we have found such mol ecules in the cephalochordate amphioxus. About 10 years

Biogeochemical factors affecting mercury methylation in sediments of the Venice Lagoon, Italy

Mercury methylation and sulfate reduction rates, total Hg, and monomethyl Hg in the sediments of the Venice Lagoon (Italy) were measured in June 2005 in order to identify the factors affecting the methylation of inorganic Hg. While the rates of Hg methylation and sulfate reduction were generally higher in the surface layers (0-2.5 cm), the correlation between Hg methylation and sulfate reduction rates was not significant when considering all depths and sites. This discrepancy is discussed considering two factors: the activity of sulfate-reducing bacteria and Hg solubility. The former factor is important in determining the Hg methylation rate in comparable geochemical conditions as evidenced by similar vertical profiles of Hg methylation and sulfate reduction rates in each sediment core. The latter factor was assessed by comparing the Hg methylation rate with the particle-water partition coefficient of Hg. The Hg methylation rates normalized to sulfate reduction rates showed a negative linear correlation with the logarithm of the particle-water partition coefficient of Hg, suggesting that the availability of dissolved Hg is a critical factor affecting Hg methylation. Solid FeS seems to play an important role in controlling the solubility of Hg in Venice Lagoon sediments, where sulfate and iron reductions are the dominant electron-accepting processes. Overall, the production of monomethyl Hg in the Venice Lagoon is controlled by a fine balance between microbial and geochemical processes with key factors being the microbial sulfate reduction rate and the availability of dissolved Hg.

Effects of cold stress and heat stress on coral fluorescence in reef-building corals

Widespread temperature stress has caused catastrophic coral bleaching events that have been devastating for coral reefs. Here, we evaluate whether coral fluorescence could be utilized as a noninvasive assessment for coral health. We conducted cold and heat stress treatments on the branching coral Acropora yongei, and found that green fluorescent protein (GFP) concentration and fluorescence decreased with declining coral health, prior to initiation of bleaching. Ultimately, cold-treated corals acclimated and GFP concentration and fluorescence recovered. In contrast, heat-treated corals eventually bleached but showed strong fluorescence despite reduced GFP concentration, likely resulting from the large reduction in shading from decreased dinoflagellate density. Consequently, GFP concentration and fluorescence showed distinct correlations in non-bleached and bleached corals. Green fluorescence was positively correlated with dinoflagellate photobiology, but its closest correlation was with coral growth suggesting that green fluorescence could be used as a physiological proxy for health in some corals.

Green fluorescent protein regulation in the coral Acropora yongei during photoacclimation

SUMMARY Reef-building corals inhabit high light environments and are dependent on photosynthetic endosymbiotic dinoflagellates for nutrition. While photoacclimation responses of the dinoflagellates to changes in illumination are well understood, host photoacclimation strategies are poorly known. This study investigated fluorescent protein expression in the shallow-water coral Acropora yongei during a 30 day laboratory photoacclimation experiment in the context of its dinoflagellate symbionts. Green fluorescent protein (GFP) concentration measured by Western blotting changed reversibly with light intensity. The first 15 days of the photoacclimation experiment led to a ∼1.6 times increase in GFP concentration for high light corals (900 μmol quanta m–2 s–1) and a ∼4 times decrease in GFP concentration for low light corals (30 μmol quanta m–2 s–1) compared with medium light corals (300 μmol quanta m–2 s–1). Green fluorescence increased ∼1.9 times in high light corals and decreased ∼1.9 times in low light corals compared with medium light corals. GFP concentration and green fluorescence intensity were significantly correlated. Typical photoacclimation responses in the dinoflagellates were observed including changes in density, photosynthetic pigment concentration and photosynthetic efficiency. Although fluorescent proteins are ubiquitous and abundant in scleractinian corals, their functions remain ambiguous. These results suggest that scleractinian corals regulate GFP to modulate the internal light environment and support the hypothesis that GFP has a photoprotective function. The success of photoprotection and photoacclimation strategies, in addition to stress responses, will be critical to the fate of scleractinian corals exposed to climate change and other stressors.

Amphioxus encodes the largest known family of green fluorescent proteins, which have diversified into distinct functional classes

BackgroundGreen fluorescent protein (GFP) has been found in a wide range of Cnidaria, a basal group of metazoans in which it is associated with pigmentation, fluorescence, and light absorbance. A GFP has been recently discovered in the pigmentless chordate Branchiostoma floridae (amphioxus) that shows intense fluorescence mainly in the head region.ResultsThe amphioxus genome encodes 16 closely-related GFP-like proteins, all of which appear to be under purifying selection. We divide them into 6 clades based on protein sequence identity and show that representatives of each clade have significant differences in fluorescence intensity, extinction coefficients, and absorption profiles. Furthermore, GFPs from two clades exhibit antioxidant capacity. We therefore propose that amphioxus GFPs have diversified their functions into fluorescence, redox, and perhaps just light absorption in relation to pigmentation and/or photoprotection.ConclusionThe rapid radiation of amphioxus GFP into clades with distinct functions and spectral properties reveals functional plasticity of the GFP core. The high sequence similarities between different clades provide a model system to map sequence variation to functional changes, to better understand and engineer GFP.

Cold induces acute stress but heat is ultimately more deleterious for the reef-building coral Acropora yongei

Climate change driven increases in intensity and frequency of both hot and cold extreme events contribute to coral reef decline by causing widespread coral bleaching and mortality. Here, we show that hot and cold temperature changes cause distinct physiological responses on different time scales in reef-building corals. We exposed the branching coral Acropora yongei in individual aquaria to a ± 5°C temperature change. Compared to heat-treated corals, cold-treated corals initially show greater declines in growth and increases in photosynthetic pressure. However, after 2–3 weeks, cold-treated corals acclimate and show improvements in physiological state. In contrast, heat did not initially harm photochemical efficiency, but after a delay, photosynthetic pressure increased rapidly and corals experienced severe bleaching and cessation of growth. These results suggest that short-term cold temperature is more damaging for branching corals than short-term warm temperature, whereas long-term elevated temperature is more harmful than long-term depressed temperature.

Simultaneous quantification of multiple nucleic acid targets using chemiluminescent probes

A novel method is described for simultaneous detection and quantification of attomoles or a few femtomoles of two (or potentially more) nucleic acid targets, without need for amplification. The technique depends on spectral-temporal resolution of chemiluminescence emitted from independent hybridization-induced chemiluminescent signal probes. The probes are internally quenched except in the presence of their specific targets, thereby allowing detection limits up to 10,000 times lower than with fluorescent probes. This is sufficient to obviate the need for amplification in many cases. The utility of the technique has been demonstrated by use of resolvable N-linked acridinium and 2,7-dimethoxyacridinium ester labeled probes in a homogeneous assay for sensitive and simultaneous independent quantification of pan-bacterial and pan-fungal target sequences in seawater.

Importance of organic matter lability for monomethylmercury production in sulfate-rich marine sediments

Sediment cores were collected from two shallow sites in the Venice Lagoon, Italy, in order to study the lability of organic matter and the methylation rate of inorganic Hg(II). Measurements were made of concentrations of total Hg and monomethylmercury (MMHg), Hg(II) methylation rates, concentrations of total organic carbon and total nitrogen in the sediments, and dissolved sulfate, sulfide, and alkalinity in sedimentary pore waters. A positive linear relationship was detected between the specific Hg(II) methylation rate constant and the fraction of total Hg comprised of MMHg (%MMHg/Hg), indicating that short-term Hg(II) methylation rate reflects a long-term accumulation of MMHg in sediment. In addition, the %MMHg/Hg and specific Hg(II) methylation rate constant in sediment increased with decreasing ratios of total organic carbon to total nitrogen (C/N), whereas concentrations of dissolved sulfate, sulfide, and alkalinity in pore water remained constant. This result suggests that the Hg(II) methylation rate was affected by lability of organic matter. In particular, surface sediments, which contained large fractions of fresh algal organic material (C/N=5.8-7.8), showed higher Hg(II) methylation rates than did deeper sediments (C/N>10). Our results indicate that the C/N ratio can be used as a proxy for the lability of organic matter that influences Hg(II) methylation rate in sulfate-rich marine sediments.

Mercury speciation in marine sediments under sulfate-limited conditions.

Sediment profiles of total mercury (Hg) and monomethylmercury (MMHg) were determined from a 30-m drill hole located north of Venice, Italy. While the sediment profile of total Hg concentration was fairly constant between 1 and 10 m, that of the MMHg concentration showed an unexpected peak at a depth of 6 m. Due to the limited sulfate content (<1 mM) at the depth of 6 m, we hypothesized that the methylation of inorganic Hg(II) at this depth is associated with the syntrophic processes occurring between methanogens and sulfidogens. To test this hypothesis, anoxic sediment slurries were prepared using buried Venice Lagoon sediments amended with HgCl(2), and we monitored MMHg concentration in sediment slurries over time under two geochemical conditions: high sulfate (1-16 mM) and limited sulfate concentrations (<100 microM). After day 52 and onward from the addition of inorganic Hg(II), the MMHg concentrations were higher in sulfate-limited slurries compared to high sulfate slurries, along with methane production in both slurries. On the basis of these results, we argue that active methylation of inorganic Hg(II) occurs under sulfate-limited conditions possibly by syntrophic processes occurring between methanogens and sulfidogens. The environmental significance of syntrophic Hg(II) methylation should be further studied.