Dirk Blunk

Schlieren textures in free-standing nematic films: evidence of biaxiality

Conoscopic studies reveal that the nematic phase of 4,4-(p-terphenyl)-bis\[2,3,4-tri(dodecyloxy)benzal]imine is biaxial, the biaxial angle increasing with schlieren textures exhibited by the nematic phase have been between glass plates, as well as free-standing consisting entirely of s or 2-brush disclinations, confirming an earlier suggestion that the absence of 4-brush disclinations is evidence of biaxiality. decreasing temperature. The examined. Films sandwiched films, exhibit a nematic schlieren texture

Mixtures of n-dodecyl-β-d-maltoside and hexaoxyethylene dodecyl ether — Surface properties, bulk properties, foam films, and foams

Mixtures of the two non-ionic surfactants hexaoxyethylene dodecyl ether (C(12)E(6)) and n-dodecyl-beta-D-maltoside (beta-C(12)G(2)) were studied with regard to surface properties, bulk properties, foam films, and foams. The reason for studying a mixture of an ethylene oxide (C(i)E(j)) and a sugar (C(n)G(m)) based surfactant is that despite being non-ionic, these two surfactants behave quite differently. Firstly, the physico-chemical properties of aqueous solutions of C(n)G(m) surfactants are less temperature-sensitive than those of C(i)E(j) solutions. Secondly, the surface charge density q(0) of foam films stabilized by C(n)G(m) surfactants is pH insensitive down to the so-called isoelectric point, while that of foam films stabilized by C(i)E(j) surfactants changes linearly with the pH. The third difference is related to interaction forces between solid surfaces. Under equilibrium conditions very high forces are needed to expel beta-C(12)G(2) from between thiolated gold surfaces, while for C(12)E(6) low loads are sufficient. Fourthly, the adsorption of C(12)E(6) and beta-C(12)G(2) on hydrophilic silica and titania, respectively, is inverted. While the surface excess of C(12)E(6) is large on silica and negligible on titania, beta-C(12)G(2) adsorbs very little on silica but has a large surface excess on titania. What is the reason for this different behaviour? Under similar conditions and for comparable head group sizes, it was found that the hydration of C(i)E(j) surfactants is one order of magnitude higher but on average much weaker than that of C(n)G(m) surfactants. Moreover, C(n)G(m) surfactants possess a rigid maltoside unit, while C(i)E(j) surfactants have a very flexible hydrophilic part. Indeed, most of the different properties mentioned above can be explained by the different hydration and the head group flexibilities. The intriguing question of how mixtures of C(i)E(j) and C(n)G(m) surfactants would behave arises organically. Thus various properties of C(12)E(6)+beta-C(12)G(2) mixtures in aqueous solution have been studied with a focus on the 1:1 mixture. The results are compared with those of the single surfactants and are discussed accordingly.

A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics

Structural bioinformatics applies computational methods to analyze and model three-dimensional molecular structures. There is a huge number of applications available to work with structural data on large scale. Using these tools on distributed computing infrastructures (DCIs), however, is often complicated due to a lack of suitable interfaces. The MoSGrid (Molecular Simulation Grid) science gateway provides an intuitive user interface to several widely-used applications for structural bioinformatics, molecular modeling, and quantum chemistry. It ensures the confidentiality, integrity, and availability of data via a granular security concept, which covers all layers of the infrastructure. The security concept applies SAML (Security Assertion Markup Language) and allows trust delegation from the user interface layer across the high-level middleware layer and the Grid middleware layer down to the HPC facilities. SAML assertions had to be integrated into the MoSGrid infrastructure in several places: the workflow-enabled Grid portal WS-PGRADE (Web Services Parallel Grid Runtime and Developer Environment), the gUSE (Grid User Support Environment) DCI services, and the cloud file system XtreemFS. The presented security infrastructure allows a single sign-on process to all involved DCI components and, therefore, lowers the hurdle for users to utilize large HPC infrastructures for structural bioinformatics.

Core-halogenated, helical-chiral triphenylene-based columnar liquid crystals

It is shown that chlorination and even bromination of the mesogenic hexahexyloxytriphenylene 1 can take place at the sterically congested tetracyclic core delivering the respective monohalogenated, sevenfold substituted enantiotropic mesogens 3 and 4 in 32 and 17% yields, respectively, giving mesophases over greater temperature ranges. Miscibility tests among all mesogenic compounds of this study prove formation of the columnar hexagonal type of phase. The steric and electronic effects of those substituents, different from the six equal alkoxy groups, on the mesophase are discussed in detail. In our hands and to our surprise, the sterically hindered acceptor (nitro or halogeno) substituents of 2, 3, or 4 could not be replaced by an alkylthio group in nucleophilic aromatic substitution reactions using the aprotic polar solvent DMEU. Semi-empirical calculations on numerous hexaethers with one or two substituents, e.g. halogens or others, in one of the three bay regions of the triphenylene core reveal that t...

New speciality surfactants with natural structural motifs

The interest in designing highly specialised synthetic surfactants incorporating natural structural motifs has increased remarkably during the last few years. The variety of naturally occurring structures used as parts of such “designer surfactants” ranges from simple amino acids and short peptides over carbohydrates to steroids. Surely, one of the most prominent examples in this respect and probably the breakthrough for tailor-made surfactants in highly specialised applications was the use of a surfactant for the first successful crystallisation of a membrane protein, a great feat for which the Nobel Prize in Chemistry was awarded in the year 1988. Moreover, the ability of certain specialised surfactants to accelerate the transport of genetic material or drugs through biological membranes is widely taken advantage of in biotechnology and pharmacy. The most important applications for surfactants, however, are related to their self-organisation in solution. Self-organisation leads to the formation of micelles, liposomes, lyotropic liquid crystalline phases, and microemulsions. These self-organised structures are used for solubilisation, transport, and separation processes, as templates for nanoparticles, as models for biomembranes, and as reaction media, to mention just a few. In all these applications surfactants designed on the basis of natural compounds are either desirable or even indispensable. An overview of some of our recent synthetic work in the field of “new speciality surfactants with natural structural motifs”, partly taking advantage of the “chiral pool”, will be given and future perspectives will be discussed.

Design of Low-molar Mass Thermomesogens in the Search for Biaxial Nematic Liquid Crystals

Abstract In this article we describe research into the molecular design features for potential thermotropic biaxial nematogens of low-molar mass. We discuss how we can systematically change the shape of molecular structures in view of this aim of our work. The optical biaxialities of the materials prepared were tested through conoscopic and birefringence measurements. So far none of these materials synthesised and tested in this way have unequivocally exhibited the biaxial nematic phase. An overview of numerous further materials different in molecular shape and in part studied by others is also given.

Infrared Multiple Photon Dissociation Spectroscopy of Potassiated Proline

The structure of proline in [proline + K]+ has been investigated in the gas phase using high level DFT and MP2 calculations and infrared photo dissociation spectroscopy with a free electron laser (FELIX). The respective FELIX spectrum of [proline + K]+ matches convincingly the calculated spectra of two structurally closely related and nearly iso-energetic zwitterionic salt bridge (SB) structures. An additional unresolved band at approximately 1725 cm(-1) matching with the characteristic CO stretching mode of charge solvation (CS) structures points toward the presence of a minor population of these conformers of proline in [proline + K]+. However, theory predicts a significant energy gap of 18.9 kJ mol(-1) (B3LYP/6-311++G(2d,2p)) or 15.6 kJ mol(-1) (MP2) between the lowest CS conformer of proline and the clearly favored SB structure.

Substitution pattern and stereochemistry versus liquid crystalline behaviour [1]

Abstract Selectively O-alkylated inositols of myo-, scyllo- and chiro-configuration allow detailed studies of the relationship between the substitution pattern in the cyclohexane ring and the liquid crystalline properties observed to be made for these mainly novel cyclic compounds containing hydroxyl functions. The types of thermotropic mesophase formed and containing hydrogen bonds are strongly influenced by the number and the stereochemical arrangement of both the hydroxyl groups and the alkyloxy chains, as well as by their positions on the cyclohexane ring. The mesophases of the various new inositol ethers have been studied by polarizing optical microscopy and differential scanning calorimetry, and are discussed here in comparison with known systems, as a function of the above mentioned structural factors.

Standards-based metadata management for molecular simulations

State‐of‐the‐art research in a variety of natural sciences depends heavily on methods of computational chemistry, for example, the calculation of the properties of materials, proteins, catalysts, and drugs. Applications providing such methods require a lot of expertise to handle their complexity and the usage of high‐performance computing. The MoSGrid (molecular simulation grid) infrastructure relieves this burden from scientists by providing a science gateway, which eases access to and usage of computational chemistry applications. One of its cornerstones is the molecular simulations markup language (MSML), an extension of the chemical markup language. MSML abstracts all chemical as well as computational aspects of simulations. An application and its results can be described with common semantics. Using such application, independent descriptions users can easily switch between different applications or compare them. This paper introduces MSML, its integration into a science gateway, and its usage for molecular dynamics, quantum chemistry, and protein docking. Copyright

Systematic Study of the Structures of Potassiated Tertiary Amino Acids: Salt Bridge Structures Dominate

The gas-phase structures of a series of potassiated tertiary amino acids have been systematically investigated using infrared multiple photon dissociation (IRMPD) spectroscopy utilizing light generated by a free electron laser, ion mobility spectrometry (IMS), and computational modeling. The examined analytes comprise a set of five linear N,N-dimethyl amino acids derived from N,N-dimethyl glycine and three cyclic N-methyl amino acids including N-methyl proline. The number of methylene groups in either the alkyl chain of the linear members or in the ring of the cyclic members of the series is gradually varied. The spectra of the cyclic potassiated molecular ions are similar and well resolved, whereas the clear signals in the respective spectra of the linear analytes increasingly overlap with longer alkyl chains. Measured IRMPD spectra are compared to spectra calculated at the B3LYP/6-311++G(2d,2p) level of theory to identify the structures present in the experimental studies. On the basis of these experiments and calculations, all potassiated molecular ions of this series adopt salt bridge structures in the gas phase, involving bidentate coordination of the potassium cation to the carboxylate moiety. The assigned salt bridge structures are predicted to be the global minima on the potential energy surfaces. IMS cross-section measurements of the potassiated systems show a monotonic increase with growing system size, suggesting that the precursor ions adopt the same type of structure and comparisons between experimental and theoretical cross sections are consistent with salt bridge structures and the IRMPD results.