Dirk V. Erler

Diel coral reef acidification driven by porewater advection in permeable carbonate sands, Heron Island, Great Barrier Reef

can play a major role in proton (H + ) cycling in a coral reef lagoon. The diel pH range (up to 0.75 units) in the Heron Island lagoon was the broadest ever reported for reef waters, and the night‐time pH (7.69) was comparable to worst‐case scenario predictions for seawater pH in 2100. The net contribution of coarse carbonate sands to the whole system H + fluxes was only 9% during the day, but approached 100% at night when small scale (i.e., flow and topography‐induced pressure gradients) and large scale (i.e., tidal pumping as traced by radon) seawater recirculation processes were synergistic. Reef lagoon sands were a net sink for H + ,a nd the sink strength was a function of porewater flushing rate. Our observations suggest that the metabolism of advection‐ dominatedcarbonatesandsmayprovideacurrently unknown feedbackto ocean acidification. Citation: Santos, I. R., R. N. Glud, D. Maher, D. Erler, and B. D. Eyre (2011), Diel coral reef acidification driven by porewater advection in permeable carbonate sands, Heron Island, Great Barrier Reef, Geophys. Res. Lett., 38, L03604, doi:10.1029/2010GL046053.

Nitrous oxide fluxes in estuarine environments: response to global change

Nitrous oxide is a powerful, long-lived greenhouse gas, but we know little about the role of estuarine areas in the global N2 O budget. This review summarizes 56 studies of N2 O fluxes and associated biogeochemical controlling factors in estuarine open waters, salt marshes, mangroves, and intertidal sediments. The majority of in situ N2 O production occurs as a result of sediment denitrification, although the water column contributes N2 O through nitrification in suspended particles. The most important factors controlling N2 O fluxes seem to be dissolved inorganic nitrogen (DIN) and oxygen availability, which in turn are affected by tidal cycles, groundwater inputs, and macrophyte density. The heterogeneity of coastal environments leads to a high variability in observations, but on average estuarine open water, intertidal and vegetated environments are sites of a small positive N2 O flux to the atmosphere (range 0.15-0.91; median 0.31; Tg N2 O-N yr(-1) ). Global changes in macrophyte distribution and anthropogenic nitrogen loading are expected to increase N2 O emissions from estuaries. We estimate that a doubling of current median NO3 (-) concentrations would increase the global estuary water-air N2 O flux by about 0.45 Tg N2 O-N yr(-1) or about 190%. A loss of 50% of mangrove habitat, being converted to unvegetated intertidal area, would result in a net decrease in N2 O emissions of 0.002 Tg N2 O-N yr(-1) . In contrast, conversion of 50% of salt marsh to unvegetated area would result in a net increase of 0.001 Tg N2 O-N yr(-1) . Decreased oxygen concentrations may inhibit production of N2 O by nitrification; however, sediment denitrification and the associated ratio of N2 O:N2 is expected to increase.

Drivers of pCO2 variability in two contrasting coral reef lagoons: The influence of submarine groundwater discharge

The impact of groundwater on pCO2 variability was assessed in two coral reef lagoons with distinct drivers of submarine groundwater discharge (SGD). Diel variability of pCO2 in the two ecosystems was explained by a combination of biological drivers and SGD inputs. In Rarotonga, a South Pacific volcanic island, 222Rn-derived SGD was driven primarily by a steep terrestrial hydraulic gradient, and the water column was influenced by the high pCO2 (5501 µatm) of the fresh groundwater. In Heron Island, a Great Barrier Reef coral cay, SGD was dominated by seawater recirculation through the sediments (i.e., tidal pumping), and pCO2 was mainly impacted through the stimulation of biological processes. The Rarotonga water column had a higher average pCO2 (549 µatm) than Heron Island (471 µatm). However, pCO2 exhibited a greater diel range in Heron Island (778 µatm) than in Rarotonga (507 µatm). The Rarotonga water column received 29.0 ± 8.2 mmol free-CO2 m−2 d−1 from SGD, while the Heron Island water column received 12.1 ± 4.2 mmol free-CO2 m−2 d−1. Over the course of this study, both systems were sources of CO2 to the atmosphere with SGD-derived free-CO2 most likely contributing a large portion to the air-sea CO2 flux. Studies measuring the carbon chemistry of coral reefs (e.g., metabolism and calcification rates) may need to consider the effects of groundwater inputs on water column carbonate chemistry. Local drivers of coral reef carbonate chemistry such as SGD may offer more approachable management solutions to mitigating the effects of ocean acidification on coral reefs.

Novel use of cavity ring-down spectroscopy to investigate aquatic carbon cycling from microbial to ecosystem scales

Development of cavity ring-down spectroscopy (CRDS) has enabled real-time monitoring of carbon stable isotope ratios of carbon dioxide and methane in air. Here we demonstrate that CRDS can be adapted to assess aquatic carbon cycling processes from microbial to ecosystem scales. We first measured in situ isotopologue concentrations of dissolved CO2 ((12)CO2 and (13)CO2) and CH4 ((12)CH4 and (13)CH4) with CRDS via a closed loop gas equilibration device during a survey along an estuary and during a 40 h time series in a mangrove creek (ecosystem scale). A similar system was also connected to an in situ benthic chamber in a seagrass bed (community scale). Finally, a pulse-chase isotope enrichment experiment was conducted by measuring real-time release of (13)CO2 after addition of (13)C enriched phytoplankton to exposed intertidal sediments (microbial scale). Miller-Tans plots revealed complex transformation pathways and distinct isotopic source values of CO2 and CH4. Calculations of δ(13)C-DIC based on CRDS measured δ(13)C-CO2 and published fractionation factors were in excellent agreement with measured δ(13)C-DIC using isotope ratio mass spectroscopy (IRMS). The portable CRDS instrumentation used here can obtain real-time, high precision, continuous greenhouse gas data in lakes, rivers, estuaries and marine waters with less effort than conventional laboratory-based techniques.

Carbon dioxide and methane emissions from an artificially drained coastal wetland during a flood: Implications for wetland global warming potential

Floods frequently produce deoxygenation and acidification in waters of artificially drained coastal acid sulfate soil (CASS) wetlands. These conditions are ideal for carbon dioxide and methane production. We investigated CO2 and CH4 dynamics and quantified carbon loss within an artificially drained CASS wetland during and after a flood. We separated the system into wetland soils (inundated soil during flood and exposed soil during post flood period), drain water, and creek water and performed measurements of free CO2 ([CO2*]), CH4, dissolved inorganic and organic carbon (DIC and DOC), stable carbon isotopes, and radon (222Rn: natural tracer for groundwater discharge) to determine aquatic carbon loss pathways. [CO2*] and CH4 values in the creek reached 721 and 81 μM, respectively, 2 weeks following a flood during a severe deoxygenation phase (dissolved oxygen ~ 0% saturation). CO2 and CH4 emissions from the floodplain to the atmosphere were 17-fold and 170-fold higher during the flooded period compared to the post-flood period, respectively. CO2 emissions accounted for about 90% of total floodplain mass carbon losses during both the flooded and post-flood periods. Assuming a 20 and 100 year global warming potential (GWP) for CH4 of 105 and 27 CO2-equivalents, CH4 emission contributed to 85% and 60% of total floodplain CO2-equivalent emissions, respectively. Stable carbon isotopes (δ13C in dissolved CO2 and CH4) and 222Rn indicated that carbon dynamics within the creek were more likely driven by drainage of surface floodwaters from the CASS wetland rather than groundwater seepage. This study demonstrated that >90% of CO2 and CH4 emissions from the wetland system occurred during the flood period and that the inundated wetland was responsible for ~95% of CO2-equivalent emissions over the floodplain.

Denitrification and Anammox in Tropical Aquaculture Settlement Ponds: An Isotope Tracer Approach for Evaluating N2 Production

Settlement ponds are used to treat aquaculture discharge water by removing nutrients through physical (settling) and biological (microbial transformation) processes. Nutrient removal through settling has been quantified, however, the occurrence of, and potential for microbial nitrogen (N) removal is largely unknown in these systems. Therefore, isotope tracer techniques were used to measure potential rates of denitrification and anaerobic ammonium oxidation (anammox) in the sediment of settlement ponds in tropical aquaculture systems. Dinitrogen gas (N2) was produced in all ponds, although potential rates were low (0–7.07 nmol N cm−3 h−1) relative to other aquatic systems. Denitrification was the main driver of N2 production, with anammox only detected in two of the four ponds. No correlations were detected between the measured sediment variables (total organic carbon, total nitrogen, iron, manganese, sulphur and phosphorous) and denitrification or anammox. Furthermore, denitrification was not carbon limited as the addition of particulate organic matter (paired t-Test; P = 0.350, n = 3) or methanol (paired t-Test; P = 0.744, n = 3) did not stimulate production of N2. A simple mass balance model showed that only 2.5% of added fixed N was removed in the studied settlement ponds through the denitrification and anammox processes. It is recommended that settlement ponds be used in conjunction with additional technologies (i.e. constructed wetlands or biological reactors) to enhance N2 production and N removal from aquaculture wastewater.

Quantifying nitrous oxide production pathways in wastewater treatment systems using isotope technology – A critical review

Nitrous oxide (N2O) is an important greenhouse gas and an ozone-depleting substance which can be emitted from wastewater treatment systems (WWTS) causing significant environmental impacts. Understanding the N2O production pathways and their contribution to total emissions is the key to effective mitigation. Isotope technology is a promising method that has been applied to WWTS for quantifying the N2O production pathways. Within the scope of WWTS, this article reviews the current status of different isotope approaches, including both natural abundance and labelled isotope approaches, to N2O production pathways quantification. It identifies the limitations and potential problems with these approaches, as well as improvement opportunities. We conclude that, while the capabilities of isotope technology have been largely recognized, the quantification of N2O production pathways with isotope technology in WWTS require further improvement, particularly in relation to its accuracy and reliability.

Effects of alongshore morphology on groundwater flow and solute transport in a nearshore aquifer

Variations of beach morphology in both the cross-shore and alongshore directions, associated with tidal creeks, are common at natural coasts, as observed at a field site on the east coast of Rarotonga, Cook Islands. Field investigations and three-dimensional (3-D) numerical simulations were conducted to study the nearshore groundwater flow and solute transport in such a system. The results show that the beach morphology, combined with tides, induced a significant alongshore flow and modified local pore water circulation and salt transport in the intertidal zone substantially. The bathymetry and hydraulic head of the creek enabled further and more rapid landward intrusion of seawater along the creek than in the aquifer, which created alongshore hydraulic gradient and solute concentration gradient to drive pore water flow and salt transport in the alongshore direction within the aquifer. The effects of the creek led to the formation of a saltwater plume in groundwater at an intermediate depth between fresher water zones on a cross-shore transect. The 3-D pore water flow in the nearshore zone was also complicated by the landward hydraulic head condition, resulting in freshwater drainage across the inland section of the creek while seawater infiltrating the seaward section. These results provided new insights into the complexity, intensity, and time scales of mixing among fresh groundwater, recirculating seawater and creek water in three dimensions. The 3-D characteristics of nearshore pore water flow and solute transport have important implications for studies of submarine groundwater discharge and associated chemical input to the coastal sea, and for evaluation of the beach habitat conditions.

Observations of nitrogen and phosphorus biogeochemistry in a surface flow constructed wetland.

Free surface water constructed wetlands (CWs) provide a buffer between domestic wastewater treatment plants and natural waterways. Understanding the biogeochemical processes in CWs is crucial to improve their performance. In this study we measured a range of water and sediment parameters, and biogeochemical processes, in an effort to describe the processing of nutrients within two wetland cells in series. As a whole the studied CW effectively absorbed both nitrogen (N) and phosphorus (P) emanating from the waste treatment plant. However the two individual cells showed marked differences related to the availability of oxygen within the water column and the sediments. In one cell we speculated that the prevalence of surface plant species reduced its ability to function as a net nutrient sink. Here we observed a build-up of sediment organic matter, sediment anoxia, a decoupling of nitrification-denitrification, and a flux of N and P out of the sediments to the overlying water. The availability of DO in the surface sediments of the second studied cell led to improved coupling between nitrification-denitrification and a net uptake of both NH4+ and PO4(3-). We hypothesise that the dominance of deeply rooted macrophytes in the second cell was responsible for the improved sediment quality.

Controls on the nitrogen isotopic composition of shallow water corals across a tropical reef flat transect

We tested the hypothesis that the nitrogen (N) isotopic signature (δ15N) of coral skeletal organic material (CS-δ15N) matches that of the coral tissue and also reflects the δ15N of water column fixed N, such that CS-δ15N can be used as a proxy for spatio-temporal oceanic N isotope distributions. Strong correlations between the δ15N of skeletal organic material and that of coral tissue in two scleractinian corals (Porites lutea and Favia stelligera) across a tropical coral reef flat support the use of CS-δ15N in reconstructing coral biomass δ15N changes. However, we observed a consistent and species-specific offset between the coral tissue δ15N and the skeletal CS-δ15N. As such, the CS-δ15N is not an absolute measure of tissue δ15N. The CS-δ15N of both coral species and three species of macroalgae increased across the reef flat in response to a natural gradient in water column δ15N. There was an apparent dampening of the water column δ15N gradient recorded in the coral tissue δ15N and the CS-δ15N, possibly caused by shifting trophic status of corals across the reef flat. The CS-δ15N therefore appears to robustly reflect the δ15N of the coral tissue, and the coral system is responsive to the δ15N of the water column N pools. The distortion of the true water column δ15N by corals requires further investigation and is an important consideration for the use of coral skeletons in temporal reconstructions of water column δ15N.