Doris J. Baker
University of Kentucky
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Clinical Microbiology Reviews | 2000
Julie A. Ribes; Carolyn L. Vanover-Sams; Doris J. Baker
The Zygomycetes represent relatively uncommon isolates in the clinical laboratory, reflecting either environmental contaminants or, less commonly, a clinical disease called zygomycosis. There are two orders of Zygomycetes containing organisms that cause human disease, the Mucorales and the Entomophthorales. The majority of human illness is caused by the Mucorales. While disease is most commonly linked to Rhizopus spp., other organisms are also associated with human infection, including Mucor, Rhizomucor, Absidia, Apophysomyces, Saksenaea, Cunninghamella, Cokeromyces, and Syncephalastrum spp. Although Mortierella spp. do cause disease in animals, there is no longer sufficient evidence to suggest that they are true human pathogens. The spores from these molds are transmitted by inhalation, via a variety of percutaneous routes, or by ingestion of spores. Human zygomycosis caused by the Mucorales generally occurs in immunocompromised hosts as opportunistic infections. Host risk factors include diabetes mellitus, neutropenia, sustained immunosuppressive therapy, chronic prednisone use, iron chelation therapy, broad-spectrum antibiotic use, severe malnutrition, and primary breakdown in the integrity of the cutaneous barrier such as trauma, surgical wounds, needle sticks, or burns. Zygomycosis occurs only rarely in immunocompetent hosts. The disease manifestations reflect the mode of transmission, with rhinocerebral and pulmonary diseases being the most common manifestations. Cutaneous, gastrointestinal, and allergic diseases are also seen. The Mucorales are associated with angioinvasive disease, often leading to thrombosis, infarction of involved tissues, and tissue destruction mediated by a number of fungal proteases, lipases, and mycotoxins. If the diagnosis is not made early, dissemination often occurs. Therapy, if it is to be effective, must be started early and requires combinations of antifungal drugs, surgical intervention, and reversal of the underlying risk factors. The Entomophthorales are closely related to the Mucorales on the basis of sexual growth by production of zygospores and by the production of coenocytic hyphae. Despite these similarities, the Entomophthorales and Mucorales have dramatically different gross morphologies, asexual reproductive characteristics, and disease manifestations. In comparison to the floccose aerial mycelium of the Mucorales, the Entomophthorales produce a compact, glabrous mycelium. The asexually produced spores of the Entomophthorales may be passively released or actively expelled into the environment. Human disease with these organisms occurs predominantly in tropical regions, with transmission occurring by implantation of spores via minor trauma such as insect bites or by inhalation of spores into the sinuses. Conidiobolus typically infects mucocutaneous sites to produce sinusitis disease, while Basidiobolus infections occur as subcutaneous mycosis of the trunk and extremities. The Entomophthorales are true pathogens, infecting primarily immunocompetent hosts. They generally do not invade blood vessels and rarely disseminate. Occasional cases of disseminated and angioinvasive disease have recently been described, primarily in immunocompromised patients, suggesting a possible emerging role for this organism as an opportunist.
Journal of Clinical Microbiology | 2001
Julie A. Ribes; Anchalee D. Steele; John P. Seabolt; Doris J. Baker
ABSTRACT Herpes infections are among the most common sexually transmitted diseases and are the most common cause of genital ulcer disease in the United States. This study addresses the changing distribution of herpes simplex virus type 1 (HSV-1) and HSV-2 in patients presenting for evaluation of herpetic infections. Viral culture results from the University of Kentucky Clinical Microbiology Laboratory were reviewed for a 6-year period (1994 through 1999). Data were collected on patient sex, site of culture, and culture result. These data were analyzed statistically to identify yearly trends. Of the 4,498 cultures analyzed, nearly equal proportions of HSV-1 (13.3%) and HSV-2 (12.0%) were detected for an overall culture positivity rate of 25.3%. Approximately two-thirds of all positive cultures were from women. Although HSV-2 remained the predominant type of genital herpes, over the 6-year span of this study, there was a trend toward increasing proportions of HSV-1 genitalis, with 31.8% of male patients and 44.8% of female patients demonstrating HSV-1 genitalis by 1999. The majority of patients with HSV in nongenital sites grew HSV-1. Although there was significant yearly variation, HSV-2 was isolated from only 9.4% of patients with nongenital HSV for the entire 6-year period. This study therefore concludes that HSV-2 remains primarily a genital pathogen, while HSV-1 is taking on an increasingly important role in causing genital ulcer disease in addition to being the primary nongenital HSV.
Journal of Clinical Microbiology | 2001
Julie A. Ribes; Marie Hayes; Angela Smith; Jeffrey L. Winters; Doris J. Baker
ABSTRACT MRL Diagnostics and Meridian Diagnostics have recently designed herpes simplex virus type 2 (HSV-2)-specific enzyme immunoassays for HSV-2 antibody detection. Blood donor sera were assayed for HSV-2 antibodies by both methods. The sensitivity, specificity, and efficiency were 97.9, 95.4, and 95.9% for the MRL assay and 83.2, 98.2, and 95.5% for the Meridian assay, respectively.
Journal of Clinical Microbiology | 2002
Julie A. Ribes; Angela Smith; Marie Hayes; Doris J. Baker; Jeffrey L. Winters
ABSTRACT Two companies, MRL and Meridian Diagnostics, have developed Food and Drug Administration-approved herpes simplex virus type 1 type-specific enzyme immunoassays. The sensitivity, specificity, and overall testing efficiency of these assays were 98.2, 93.8, and 96.6% for MRL and 98.8, 99.0, and 98.1% for Meridian, making both of these kits suitable for use in the clinical lab.
Reproductive Biomedicine Online | 2011
Phillip J. Bridges; Myoungkun Jeoung; Heyoung Kim; Jung Ho Kim; Dong Ryul Lee; CheMyong Ko; Doris J. Baker
The use of assisted reproduction treatment, especially intracytoplasmic sperm injection (ICSI), is now linked to a range of adverse consequences, the aetiology of which remains largely undefined. Our objective of this study was to determine differences in gene expression of blastocysts generated by ICSI as well as ICSI with artificial oocyte activation (ICSI-A) versus the less manipulative IVF, providing fundamental genetic information that can be used to aid in the diagnosis or treatment of those adversely affected by assisted reproduction treatment, as well as stimulate research to further refine these techniques. Murine blastocysts were generated by ICSI, ICSI-A and IVF, and processed for a microarray-based analysis of gene expression. Ten blastocysts were pooled for each procedure and three independent replicates generated. The data were then processed to determine differential gene expression and to identify biological pathways affected by the procedures. In blastocysts derived by ICSI versus IVF, the expression of 197 genes differed (P < 0.01). In blastocysts derived by ICSI-A versus IVF and ICSI-A versus ICSI, the expression of 132 and 65 genes differed respectively (P < 0.01). Procedural-induced changes in genes regulating specific biological pathways revealed some consistency to known adverse consequences. Detailed investigation of procedure-specific dysfunction is therefore warranted.
Archive | 2012
Doris J. Baker
Assisted reproductive technology (ART) laboratories are associated with assisted reproductive medical practices. These entities are unique in that they do not perform laboratory testing for purposes of diagnosis and treatment of disease but work with gametes and preembryos, performing interventions and treatments for infertility. These interventions and treatments vary among ART practices and extend from basic in vitro fertilization to highly complex and multifaceted genetic and molecular procedures. The level of education, training, and experience of the embryologists performing the work diverges as well, ranging from doctoral scientists specifically educated for the field to individuals trained on-site to perform procedures. Oversight of embryology and associated personnel may be by statute, regulation, guidelines, accreditation, licensure, or certification, or the field of embryology and embryologists may function without benefit of any type of scrutiny. Insufficient scrutiny, or inconsistent and confusing regulation of these ART interventions and treatments, as well as qualifications and oversight of the individuals performing the tasks, is of general concern. The procedures, which are often controversial, affect not only the infertile couple and any offspring that might result but also in cases of third-party reproduction multiple individuals who are involved, and because of associated medical, economic, scientific, ethical, religious, and legislative issues, ART has an effect on society as a whole. As a result, there is a movement to bring formal recognition and professional status to embryology. Members of the profession will then be able to petition for certification as an expectation for practice. Once embryology board certification is the standard, it will become a regulatory requirement, conferring embryologists parity with other medical and healthcare professionals. As well, members of the profession will be able to promote standardization for the field, have input into guidelines and development of quality standards for “laboratory” accreditation, and move toward self-regulation.
Archive | 2004
Kay Elder; Doris J. Baker; Julie A. Ribes
Archive | 2004
Kay Elder; Doris J. Baker; Julie A. Ribes
Biology of Reproduction | 2011
Phillip J. Bridges; Myoungkun Jeoung; Heyoung Kim; Jung Ho Kim; Dong Ryul Lee; CheMyong Ko; Doris J. Baker
Archive | 2010
Kay Elder; Doris J. Baker