Dries Roobroeck

Pathway of nitrous oxide consumption in isolated Pseudomonas stutzeri strains under anoxic and oxic conditions

The microbial consumption of nitrous oxide (N2O) has gained great interest since it was revealed that this process could mitigate the greenhouse effect of N2O. The consumption of N2O results from its reduction to dinitrogen gas (N2) as part of the denitrification process. However, there is ongoing debate regarding an alternative pathway, namely reduction of N2O to NH4(+), or assimilatory N2O consumption. To date, this pathway is poorly investigated and lacks unambiguous evidence. Enrichment of denitrifying activated sludge using a mineral nitrogen-free medium rendered a mixed culture capable of anoxic and oxic N2O consumption. Dilution plating, isolation and deoxyribonucleic acid fingerprinting identified a collection of Pseudomonas stutzeri strains as dominant N2O consumers in both anaerobic and aerobic enrichments. A detailed isotope tracing experiment with a Pseudomonas stutzeri isolate showed that consumption of N2O via assimilatory reduction to NH4(+) was absent. Conversely, respiratory N2O reduction was directly coupled to N2 fixation.

Microbial nitrogen dynamics in south central Chilean agricultural and forest ecosystems located on an Andisol

The natural soil N supply in volcanic soils (Andisols) can be a significant source of plant-available N for agro-ecosystems. Nevertheless, intensive farming systems in south Chile apply high fertilization rates, which lead to high production costs and involve a risk for adverse ecosystem effects. In order to achieve sustainable land management, a better understanding of the processes that govern soil N availability and loss, and their external drivers, is required. In this study, we selected a winter-cropland, a summer crop-winter fallow rotation, and a forest, used as a reference ecosystem. Gross N transformations (15N isotope dilution) and microbial community structure (phospho-lipid fatty acid analysis) in the topsoil were determined. Gross N mineralization was about ten times lower in the agro-ecosystems than in the forest, while gross nitrification was low in all sites. Gross N immobilization equalized or exceeded the gross inorganic N production in all sites. Microbial biomass was 3–5 times more abundant in the forest than in the agro-ecosystems. A positive relationship between the ratio fungi/bacteria and total microbial biomass was observed in these Andisols. We suggest that the reduction in fungal biomass induced a lower extracellular enzyme production and limited soil organic matter depolymerisation in the agro-ecosystems. We conclude that soil N cycling was unable to provide a significant N input for the croplands, but also the risk for ecosystem N losses was low, even under fallow soil conditions. Current fertilization practices appropriately anticipated the soil N cycling processes, but further research should indicate the potential of alternative land management to reduce fertilizer cost.

Leaky nitrogen cycle in pristine African montane rainforest soil

Many pristine humid tropical forests show simultaneously high nitrogen (N) richness and sustained loss of bioavailable N forms. To better understand this apparent upregulation of the N cycle in tropical forests, process-based understanding of soil N transformations, in geographically diverse locations, remains paramount. Field-based evidence is limited and entirely lacking for humid tropical forests on the African continent. This study aimed at filling both knowledge gaps by monitoring N losses and by conducting an in situ 15N labeling experiment in the Nyungwe tropical montane forest in Rwanda. Here we show that this tropical forest shows high nitrate (NO3−) leaching losses, confirming findings from other parts of the world. Gross N transformation rates point to an open soil N cycle with mineralized N nitrified rather than retained via immobilization; gross immobilization of NH4+ and NO3− combined accounted for 37% of gross mineralization, and plant N uptake is dominated by ammonium (NH4+). This study provided new process understanding of soil N cycling in humid tropical forests and added geographically independent evidence that humid tropical forests are characterized by soil N dynamics and N inputs sustaining bioavailable N loss.