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Dive into the research topics where Dubravko Sabo is active.

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Featured researches published by Dubravko Sabo.


Molecular Simulation | 2006

Molecular studies of the structural properties of hydrogen gas in bulk water

Dubravko Sabo; Susan B. Rempe; Jeffery A. Greathouse; Marcus G. Martin

We report on our studies of the structural properties of a hydrogen molecule dissolved in liquid water. The radial distribution function, coordination number and coordination number distribution are calculated using different representations of the interatomic forces within molecular dynamics (MD), Monte Carlo (MC) and ab initio molecular dynamics (AIMD) simulation frameworks. Although structural details differ in the radial distribution functions generated from the different force fields, all approaches agree that the average and most probable number of water molecules occupying the inner hydration sphere around hydrogen is 16. Furthermore, all results exclude the possibility of clathrate-like organization of water molecules around the hydrophobic molecular hydrogen solute.


Journal of Physical Chemistry B | 2015

Hydration of Kr(aq) in Dilute and Concentrated Solutions

Mangesh I. Chaudhari; Dubravko Sabo; Lawrence R. Pratt; Susan B. Rempe

Molecular dynamics simulations of water with both multi-Kr and single Kr atomic solutes are carried out to implement quasi-chemical theory evaluation of the hydration free energy of Kr(aq). This approach obtains free energy differences reflecting Kr-Kr interactions at higher concentrations. Those differences are negative changes in hydration free energies with increasing concentrations at constant pressure. The changes are due to a slight reduction of packing contributions in the higher concentration case. The observed Kr-Kr distributions, analyzed with the extrapolation procedure of Krüger et al., yield a modestly attractive osmotic second virial coefficient, B2 ≈ -60 cm(3)/mol. The thermodynamic analysis interconnecting these two approaches shows that they are closely consistent with each other, providing support for both approaches.


Journal of Molecular Biology | 2008

K+/Na+ selectivity in K channels and valinomycin: over-coordination versus cavity-size constraints.

Sameer Varma; Dubravko Sabo; Susan B. Rempe


Journal of Physical Chemistry B | 2008

Studies of the Thermodynamic Properties of Hydrogen Gas in Bulk Water

Dubravko Sabo; Sameer Varma; Marcus G. Martin; Susan B. Rempe


Archive | 2015

Hydration of classic hydrophobic solutes Ar and Kr.

Mangesh I. Chaudhari; Susan B. Rempe; Lawrence R. Pratt; D. Asthagiri; Liang Tan; Dubravko Sabo


The Royal Society of Chemistry | 2013

Case study of Rb%2B(aq) quasi-chemical theory of ion hydration and the no split occupancies rule.

Susan B. Rempe; Dubravko Sabo; Dian Jiao; Sameer Varma; Lawrence R. Pratt


Archive | 2013

of ion hydration, and the no split occupancies rule

Dubravko Sabo; D. Jiao; Sameer Varma; Susan B. Rempe


Pccp | 2008

Classical/Ab initio molecular simulations and quasichemical approach to study hydrophobic and hydrophilic hydration phenomena.

Dubravko Sabo; Sameer Varma; Lawrence R. Pratt; Susan B. Rempe


Archive | 2008

Classical/ab initio molecular dynamics and quasichemical approach to the study of hydrophobic/hydrophilic hydration phenomena.

Dubravko Sabo; Sameer Varma; Susan B. Rempe


Archive | 2008

Classical and quantum chemical studies of Rb+ & Cs+ to understand mechanisms in K-channels.

Sameer Varma; Dubravko Sabo; Susan B. Rempe

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Susan B. Rempe

Sandia National Laboratories

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Sameer Varma

University of South Florida

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Marcus G. Martin

Sandia National Laboratories

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Jacalyn S. Clawson

Sandia National Laboratories

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Kevin Leung

Sandia National Laboratories

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Randall T. Cygan

Sandia National Laboratories

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Todd M. Alam

Sandia National Laboratories

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