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Dive into the research topics where Duncan A. Clark is active.

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Featured researches published by Duncan A. Clark.


Journal of Clinical Microbiology | 2006

Human Herpesvirus 6 Chromosomal Integration in Immunocompetent Patients Results in High Levels of Viral DNA in Blood, Sera, and Hair Follicles

Katherine N. Ward; Hoe Nam Leong; Elisabeth P. Nacheva; Julie Howard; Claire Atkinson; Nicholas W. S. Davies; Paul D. Griffiths; Duncan A. Clark

ABSTRACT Six immunocompetent patients with human herpesvirus 6 (HHV-6) chromosomal integration had HHV-6 and β-globin DNA quantified in various samples by PCR. The mean HHV-6 DNA concentration (log10 copies/milliliter) in blood was 7.0 (≥1 HHV-6 DNA copies/leukocyte), and in serum it was 5.3 (≥1 HHV-6 DNA copies/lysed cell). The mean HHV-6 DNA load (log10 copies)/hair follicle was 4.2 (≥1 copies/hair follicle cell), demonstrating that viral integration is not confined to blood cells. The characteristically high HHV-6 DNA levels in chromosomal integration may confound laboratory diagnosis of HHV-6 infection and should be given due consideration.


British Journal of Haematology | 2000

High levels of human herpesvirus 6 DNA in peripheral blood leucocytes are correlated to platelet engraftment and disease in allogeneic stem cell transplant patients.

Per Ljungman; F.‐Z. Wang; Duncan A. Clark; Vincent C. Emery; Mats Remberger; Olle Ringdén; Annika Linde

The aim of this study was to correlate human herpesvirus (HHV)‐6 viral load with clinical symptoms in allogeneic stem cell transplant (SCT) patients. Seventy‐four patients were monitored during the first 3 months after SCT using a qualitative polymerase chain reaction (PCR) for HHV‐6 DNA. HHV‐6 was detected in 181 out of 494 samples (36%) from 58 (78%) patients. These 181 samples were analysed using a quantitative competitive PCR. DNA could be quantified from 146 out of 181 samples (80·6%). The HHV‐6 viral load was highest at 4 weeks compared with 8 weeks (P < 0·001) and 12 weeks (P = 0·01) after SCT. Three patients had HHV‐6 encephalitis and one patient had hepatitis. The HHV‐6 DNA levels were higher in patients with HHV‐6 than in those without HHV‐6 (P = 0·01). Patients who received grafts from unrelated or HLA‐mismatched family donors had significantly higher HHV‐6 DNA levels than patients who received grafts from matched sibling donors (P < 0·001). In a multiple regression model, unrelated donor grafts (P < 0·001) and use of intravenous immunoglobulin prophylaxis (P = 0·04) influenced HHV‐6 DNA levels. HHV‐6 viral load was significantly correlated with delayed platelet engraftment in both univariate (P < 0·01) and multivariate analysis, and to the number of platelet transfusions.


The Journal of Infectious Diseases | 2006

Transmission of Integrated Human Herpesvirus 6 through Stem Cell Transplantation: Implications for Laboratory Diagnosis

Duncan A. Clark; Elisabeth P. Nacheva; Hoe Nam Leong; Diana Brazma; Ying Ting Li; Edward Tsao; Hubertus C.E. Buyck; Claire Atkinson; Heather M. Lawson; Michael N. Potter; Paul D. Griffiths

We identified a stem cell donor with chromosomally integrated human herpesvirus (HHV)-6 and monitored the recipient for HHV-6 after transplantation. The appearance and subsequent increase in HHV-6 load paralleled engraftment and an increase in white blood cell count. Fluorescent in situ hybridization analysis showed integrated HHV-6 on chromosome band 17p13.3 in the donor and in the recipient after transplantation but not in the recipient before transplantation. The increase in viral load due to the genetic transmission of integrated HHV-6 could have been misinterpreted as substantial active infection and, thus, led to the administration of toxic antiviral therapy. We suggest that the confounding influence of integration be considered in laboratory investigations associating HHV-6 with disease.


Neurology | 2009

Humoral immune response to EBV in multiple sclerosis is associated with disease activity on MRI

Rachel Farrell; D. Antony; G.R. Wall; Duncan A. Clark; L Fisniku; J. Swanton; Z. Khaleeli; Klaus Schmierer; Dh Miller; Gavin Giovannoni

Background: Evidence suggests that Epstein-Barr virus (EBV) plays a role in triggering or perpetuating disease activity in multiple sclerosis (MS). Methods: We investigated 100 subjects (50 clinically isolated syndrome [CIS], 25 relapsing-remitting [RR] MS, 25 primary progressive [PP] MS) for 1) evidence of EBV reactivation and 2) disease activity as indicated by serial gadolinium (Gd)-enhanced MRIs over a 5-year period. EBV DNA in blood was quantified by real-time quantitative PCR and EBV serology for anti-Epstein-Barr virus nuclear antigen 1 (EBNA-1) immunoglobulin G (IgG), anti-viral capsid antigen (VCA) IgG, and anti-EBV IgM. Data were analyzed using repeated measures analysis, analysis of variance, and logistic regression analysis. Results: All subjects had serologic evidence of previous EBV infection, but no lytic reactivation was detected. Significant differences in EBNA-1 IgG titers were found between subgroups, highest in the RRMS cohort compared with PPMS (p < 0.001) and CIS (p < 0.001). Gd-enhancing lesions on MRI correlated with EBNA-1 IgG (r = 0.33, p < 0.001) and EBNA-1:VCA IgG ratio (r = 0.36, p < 0.001). EBNA-1 IgG also correlated with change in T2 lesion volume (r = 0.27, p = 0.044) and Expanded Disability Status Scale score (r = 0.3, p = 0.035). Conclusions: The correlation between elevated Epstein-Barr virus nuclear antigen 1 (EBNA-1) immunoglobulin G (IgG) and gadolinium-enhancing lesions suggests an association between Epstein-Barr virus (EBV) infection and multiple sclerosis (MS) disease activity. The heightened immune response to EBV in MS is specifically related to EBNA-1 IgG, a marker of the latent phase of the virus. The lack of association between acute viral reactivation in the peripheral blood and Gd+ lesions suggests a limited role of the former in driving disease activity.


Transplantation | 2000

Prospective study of human betaherpesviruses after renal transplantation - Association of human herpesvirus 7 and cytomegalovirus co-infection with cytomegalovirus disease and increased rejection

Kidd Im; Duncan A. Clark; Ca Sabin; D Andrew; Aycan F. Hassan-Walker; P. Sweny; P. D. Griffiths; Vincent C. Emery

BACKGROUND Human herpesvirus 6 (HHV-6) and HHV-7 are two lymphotropic herpesviruses, which, like cytomegalovirus (CMV), have the potential to be pathogenic in immunocompromised individuals. We have conducted a prospective investigation to compare the natural history of HHV-6 and HHV-7 infection with that of CMV after renal transplantation. METHODS Polymerase chain reaction was used to identify infections and quantify the viral load of CMV, HHV-6, and HHV-7 in peripheral blood samples from 52 renal transplant recipients. Betaherpesvirus infections were related to defined clinical criteria obtained by detailed examination of the clinical records of each patient for the immediate 120-day posttransplant period. RESULTS CMV was the most commonly detected virus after transplant (58% of patients), followed by HHV-7 (46%) and HHV-6 (23%). Examining the time to first polymerase chain reaction positivity, HHV-7 infection was detected earlier than CMV (P=0.05). The median maximum CMV viral load was significantly higher than those for HHV-6 (P=0.01) and HHV-7 (P<0.0001) and a trend for HHV-7 viral load to be greater than HHV-6 (P=0.08). Clinicopathological analyses revealed that, in those patients with rejection, HHV-7 was associated with more episodes of rejection (P=0.02). In addition, there was a significant increase in CMV disease occurring in patients with CMV and HHV-7 co-infection compared to those with CMV infection only (P=0.04). CONCLUSIONS HHV-7 should be further investigated as a possible co-factor in the development of CMV disease in renal transplant patients and may potentially exacerbate graft rejection. No clear pathological role was observed for HHV-6.


Archives of Virology | 2014

Classification of HHV-6A and HHV-6B as distinct viruses

Dharam V. Ablashi; Henri Agut; Roberto Alvarez-Lafuente; Duncan A. Clark; Stephen Dewhurst; Dario DiLuca; Louis Flamand; Niza Frenkel; Robert C. Gallo; Ursula A. Gompels; Per Höllsberg; Steven Jacobson; Mario Luppi; Paolo Lusso; Mauro S. Malnati; Peter G. Medveczky; Yasuko Mori; Philip E. Pellett; Joshua C. Pritchett; Koichi Yamanishi; Tetsushi Yoshikawa

Shortly after the discovery of human herpesvirus 6 (HHV-6), two distinct variants, HHV-6A and HHV-6B, were identified. In 2012, the International Committee on Taxonomy of Viruses (ICTV) classified HHV-6A and HHV-6B as separate viruses. This review outlines several of the documented epidemiological, biological, and immunological distinctions between HHV-6A and HHV-6B, which support the ICTV classification. The utilization of virus-specific clinical and laboratory assays for distinguishing HHV-6A and HHV-6B is now required for further classification. For clarity in biological and clinical distinctions between HHV-6A and HHV-6B, scientists and physicians are herein urged, where possible, to differentiate carefully between HHV-6A and HHV-6B in all future publications.


Reviews in Medical Virology | 2000

Human herpesvirus 6

Duncan A. Clark

Human herpesvirus 6 (HHV‐6), a member of the β‐herpesvirinae subfamily, is highly seroprevalent, has a worldwide distribution, and infection usually occurs within the first two years of life. In this age group, HHV‐6 causes febrile illness including exanthem subitum with seizures a recognised complication. The virus is predominantly T lymphotropic although it can infect a variety of cell types in vitro and CD46 has recently been identified as a cellular receptor. The virus persists in the host, with a latent state proposed in monocytes and bone marrow progenitor cells, and chronic infection in salivary glands. The virus is pathogenic in the post transplantation period and may be a cofactor in the progression of HIV disease. The virus has also been associated with multiple sclerosis (MS), with the virus detected in oligodendrocytes particularly in plaque regions. The role of HHV‐6 in MS remains controversial and a more extensive understanding of its neurotropism and association with disease is required. Two variants of HHV‐6 exist (A and B) and comparison of their complete nucleotide sequences shows the genomes to be colinear, with a high degree of homology. Variation in specific regions of the genome is more extensive and probably accounts for biological and pathological differences. Almost exclusively, variant B is associated with febrile illness in childhood and is the predominant variant detected in healthy individuals. The epidemiology of HHV‐6A infection needs to be better defined, although it is significantly less prevalent. Biological, genetic, epidemiological and pathological findings suggest that the two variants are divergent. Copyright


Journal of Clinical Microbiology | 2007

Human Herpesvirus 6 DNA Levels in Cerebrospinal Fluid Due to Primary Infection Differ from Those Due to Chromosomal Viral Integration and Have Implications for Diagnosis of Encephalitis

Katherine N. Ward; Hoe Nam Leong; Anton D. Thiruchelvam; Claire Atkinson; Duncan A. Clark

ABSTRACT The prevalence and concentration of human herpesvirus 6 (HHV-6) DNA in the cerebrospinal fluid (CSF) of the immunocompetent in primary infection was compared with that in viral chromosomal integration. Samples from 510 individuals with suspected encephalitis, 200 young children and 310 older children and/or adults, and 12 other patients were tested. HHV-6 DNA concentration (log10 copies/ml) was measured in CSF, serum, and whole blood using PCR. Serum HHV-6 immunoglobulin G antibody was measured by indirect immunofluorescence. Primary infection was defined by antibody seroconversion and/or a low concentration of HHV-6 DNA (<3.0 log10 copies/ml) in a seronegative serum. Chromosomal integration was defined by a high concentration of viral DNA in serum (≥3.5 log10 copies/ml) or whole blood (≥6.0 log10 copies/ml). The prevalences of CSF HHV-6 DNA in primary infection and chromosomal integration were 2.5% and 2.0%, respectively, in the young children (<2 years) and 0% and 1.3%, respectively, in the older children and/or adults. The mean concentration of CSF HHV-6 DNA in 9 children with primary infection (2.4 log10 copies/ml) was significantly lower than that of 21 patients with viral chromosomal integration (4.0 log10 copies/ml). Only HHV-6B DNA was found in primary infection, whereas in viral integration, 4 patients had HHV-6A and 17 patients HHV-6B. Apart from primary infection, chromosomal integration is the most likely cause of HHV-6 DNA in the CSF of the immunocompetent. Our results show that any diagnosis of HHV-6 encephalitis or other type of active central nervous system infection should not be made without first excluding chromosomal HHV-6 integration by measuring DNA load in CSF, serum, and/or whole blood.


Clinical Infectious Diseases | 2015

Astrovirus VA1/HMO-C: An Increasingly Recognized Neurotropic Pathogen in Immunocompromised Patients

Julianne R. Brown; Sofia Morfopoulou; Jonathan Hubb; Warren Emmett; Winnie Ip; Divya Shah; Tony Brooks; Simon Paine; Glenn Anderson; Alex Virasami; C. Y. William Tong; Duncan A. Clark; Vincent Plagnol; Ts Jacques; Waseem Qasim; Mike Hubank; Judith Breuer

Brain biopsy from a child with unknown cause of encephalopathy was deep-sequenced. Astrovirus VA1/HMO-C was identified, highly divergent from human astroviruses and 95% identical to astrovirus previously associated with encephalitis. Findings suggest astrovirus VA1/HMO-C is an under-recognized cause of viral encephalitis.


Journal of Medical Virology | 2008

Human herpesvirus 6 integrates within telomeric regions as evidenced by five different chromosomal Sites

Elisabeth P. Nacheva; Katherine N. Ward; Diana Brazma; Anna Virgili; Julie Howard; Hoe Nam Leong; Duncan A. Clark

Fluorescent in situ hybridization (FISH) was used to investigate the chromosomal integration sites of human herpesvirus 6 (HHV‐6) in phytohemagglutinin‐stimulated leukocytes and B lymphocytes from Epstein–Barr virus transformed lymphoblastoid cell lines (LCLs). Five different chromosomal integration sites were found in nine individuals. Only one site was identified in each individual, each site was in the vicinity of the telomeric region and was on either the p or q arm of only one of the two chromosome homologues. The sites were 9q34.3, 10q26.3, 11p15.5, 17p13.3, and 19q 13.4, of which three have not been previously identified. For 9q34.3 the site of integration was further mapped using a locus‐specific probe for 9q34.3 together with a pan‐telomeric probe and both co‐localized with the HHV‐6 signal. Similarly an arm‐specific telomeric probe for 19q co‐localized with the HHV‐6 signal. It was therefore concluded that the site of integration is actually within the telomere. The number of viral DNA copies/cell was calculated in blood, LCL cells and hair follicles and was one or more in every case for each of the nine individuals. This result was confirmed by FISH where 100% of cells gave an HHV‐6 signal. These findings add to previous reports suggesting that integrated HHV‐6 DNA is found in every cell in the body and transmitted vertically. Finally, including our data, worldwide seven different chromosomal sites of HHV‐6 integration have now been identified. Large epidemiological studies of chromosomal integration are required to identify further telomeric sites, geographical or racial variation and possible clinical consequences. J. Med. Virol. 80:1952–1958, 2008.

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Claire Atkinson

University College London

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Katherine N. Ward

University College Hospital

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David F. Bibby

Queen Mary University of London

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Judith Breuer

University College London

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Kidd Im

Royal Free London NHS Foundation Trust

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Adele V. Lee

Queen Mary University of London

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