Duncan J. Mowbray

Direct Imaging of Covalent Bond Structure in Single-Molecule Chemical Reactions

Watching Organic Reactions Single-molecule studies can overcome the difficulty of inferring the various outcomes of reactions in ensemble measurements. De Oteyza et al. (p. 1434, published online 30 May; see the Perspective by Giessibl) used a variation of noncontact atomic force microscopy in which the imaging tip was derivatized with a single CO molecule to obtain subnanometer-resolution images of conjugated organic molecules undergoing reaction on a silver surface. Different thermally induced cyclization reactions of oligo- (phenylene-1,2-ethynylenes) were observed. Noncontact atomic force microscopy imaged the bond structure of an adsorbed organic reactant and its cyclization products. [Also see Perspective by Giessibl] Observing the intricate chemical transformation of an individual molecule as it undergoes a complex reaction is a long-standing challenge in molecular imaging. Advances in scanning probe microscopy now provide the tools to visualize not only the frontier orbitals of chemical reaction partners and products, but their internal covalent bond configurations as well. We used noncontact atomic force microscopy to investigate reaction-induced changes in the detailed internal bond structure of individual oligo-(phenylene-1,2-ethynylenes) on a (100) oriented silver surface as they underwent a series of cyclization processes. Our images reveal the complex surface reaction mechanisms underlying thermally induced cyclization cascades of enediynes. Calculations using ab initio density functional theory provide additional support for the proposed reaction pathways.

Stability and Electronic Properties of TiO2 Nanostructures With and Without B and N Doping

We address one of the main challenges to TiO2-photocatalysis, namely band gap narrowing, by combining nanostructural changes with doping. With this aim we compare TiO2s electronic properties for small 0D clusters, 1D nanorods and nanotubes, 2D layers, and 3D surface and bulk phases using different approximations within density functional theory and GW calculations. In particular, we propose very small (R < 0.5 nm) but surprisingly stable nanotubes with promising properties. The nanotubes are initially formed from TiO2 layers with the PtO2 structure, with the smallest (2,2) nanotube relaxing to a rutile nanorod structure. We find that quantum confinement effects - as expected - generally lead to a widening of the energy gap. However, substitutional doping with boron or nitrogen is found to give rise to (meta-)stable structures and the introduction of dopant and mid-gap states which effectively reduce the band gap. Boron is seen to always give rise to n-type doping while depending on the local bonding geometry, nitrogen may give rise to n-type or p-type doping. For under coordinated TiO2 surface structures found in clusters, nanorods, nanotubes, layers and surfaces nitrogen gives rise to acceptor states while for larger clusters and bulk structures donor states are introduced.

Density functional theory based screening of ternary alkali-transition metal borohydrides: A computational material design project

We present a computational screening study of ternary metal borohydrides for reversible hydrogen storage based on density functional theory. We investigate the stability and decomposition of alloys containing 1 alkali metal atom, Li, Na, or K (M(1)); and 1 alkali, alkaline earth or 3d/4d transition metal atom (M(2)) plus two to five (BH(4))(-) groups, i.e., M(1)M(2)(BH(4))(2-5), using a number of model structures with trigonal, tetrahedral, octahedral, and free coordination of the metal borohydride complexes. Of the over 700 investigated structures, about 20 were predicted to form potentially stable alloys with promising decomposition energies. The M(1)(Al/Mn/Fe)(BH(4))(4), (Li/Na)Zn(BH(4))(3), and (Na/K)(Ni/Co)(BH(4))(3) alloys are found to be the most promising, followed by selected M(1)(Nb/Rh)(BH(4))(4) alloys.

Influence of functional groups on charge transport in molecular junctions

Using density functional theory (DFT), we analyze the influence of five classes of functional groups, as exemplified by NO(2), OCH(3), CH(3), CCl(3), and I, on the transport properties of a 1,4-benzenedithiolate (BDT) and 1,4-benzenediamine (BDA) molecular junction with gold electrodes. Our analysis demonstrates how ideas from functional group chemistry may be used to engineer a molecules transport properties, as was shown experimentally and using a semiempirical model for BDA [Nano Lett. 7, 502 (2007)]. In particular, we show that the qualitative change in conductance due to a given functional group can be predicted from its known electronic effect (whether it is sigma/pi donating/withdrawing). However, the influence of functional groups on a molecules conductance is very weak, as was also found in the BDA experiments. The calculated DFT conductances for the BDA species are five times larger than the experimental values, but good agreement is obtained after correcting for self-interaction and image charge effects.

Understanding energy-level alignment in donor-acceptor/metal interfaces from core-level shifts

The molecule/metal interface is the key element in charge injection devices. It can be generally defined by a monolayer-thick blend of donor and/or acceptor molecules in contact with a metal surface. Energy barriers for electron and hole injection are determined by the offset from HOMO (highest occupied) and LUMO (lowest unoccupied) molecular levels of this contact layer with respect to the Fermi level of the metal electrode. However, the HOMO and LUMO alignment is not easy to elucidate in complex multicomponent, molecule/metal systems. We demonstrate that core-level photoemission from donor-acceptor/metal interfaces can be used to straightforwardly and transparently assess molecular-level alignment. Systematic experiments in a variety of systems show characteristic binding energy shifts in core levels as a function of molecular donor/acceptor ratio, irrespective of the molecule or the metal. Such shifts reveal how the level alignment at the molecule/metal interface varies as a function of the donor-acceptor stoichiometry in the contact blend.

Influence of O2 and N2 on the conductivity of carbon nanotube networks

We have performed experiments on single-wall carbon nanotube (SWNT) networks and compared with density-functional theory (DFT) calculations to identify the microscopic origin of the observed sensitivity of the network conductivity to physisorbed

Level alignment of a prototypical photocatalytic system: methanol on TiO2(110).

{\text{O}}_{2}

Trends in Metal Oxide Stability for Nanorods, Nanotubes, and Surfaces

and

Comparative study of anchoring groups for molecular electronics: structure and conductance of Au–S–Au and Au–NH2–Au junctions

{\text{N}}_{2}

Quasiparticle Level Alignment for Photocatalytic Interfaces.

. Previous DFT calculations of the transmission function for isolated pristine SWNTs have found physisorbed molecules have little influence on their conductivity. However, by calculating the four-terminal transmission function of crossed SWNT junctions, we show that physisorbed