Dunwu Qi

Ecological niche modeling of the sympatric giant and red pandas on a mountain-range scale

Habitat use and separation between the two sympatric species, the giant panda and the red panda, have been primary causes of coexistence at the fine scale. In this paper, we addressed the question of coexistence between species in space. By Ecological Niche Factor Analysis, we calculated species-specific habitat requirements, built habitat suitability maps and examined interspecific differences in spatial niche parameters. According to the ENFA scores, suitable habitats in the giant and red panda are surrounded by high-altitude, and are rich in conifer forest. Compared with the giant panda, however, the red panda rather preferred sparse forests, and normally colonized far from village and road. Despite similar narrow niche breadth for both pandas, difference of niche overlap indices implied that the width of environmental niche of red pandas almost completely encompasses that of the giant panda. We, therefore, suggest that differences in use of ecological niche variables may contribute to coexistence of the sympatric species in space. Based on highly suitable locations of the sympatric species maps, most official reserves appear to be poorly located or are too small, and new reserves are recommended to be established in the central part of core habitats in the Liangshan Mountains.

Genetic structuring and recent demographic history of red pandas (Ailurus fulgens) inferred from microsatellite and mitochondrial DNA

Clarification of the genetic structure and population history of a species can shed light on the impacts of landscapes, historical climate change and contemporary human activities and thus enables evidence‐based conservation decisions for endangered organisms. The red panda (Ailurus fulgens) is an endangered species distributing at the edge of the Qinghai‐Tibetan Plateau and is currently subject to habitat loss, fragmentation and population decline, thus representing a good model to test the influences of the above‐mentioned factors on a plateau edge species. We combined nine microsatellite loci and 551 bp of mitochondrial control region (mtDNA CR) to explore the genetic structure and demographic history of this species. A total of 123 individuals were sampled from 23 locations across five populations. High levels of genetic variation were identified for both mtDNA and microsatellites. Phylogeographic analyses indicated little geographic structure, suggesting historically wide gene flow. However, microsatellite‐based Bayesian clustering clearly identified three groups (Qionglai‐Liangshan, Xiaoxiangling and Gaoligong‐Tibet). A significant isolation‐by‐distance pattern was detected only after removing Xiaoxiangling. For mtDNA data, there was no statistical support for a historical population expansion or contraction for the whole sample or any population except Xiaoxiangling where a signal of contraction was detected. However, Bayesian simulations of population history using microsatellite data did pinpoint population declines for Qionglai, Xiaoxiangling and Gaoligong, demonstrating significant influences of human activity on demography. The unique history of the Xiaoxiangling population plays a critical role in shaping the genetic structure of this species, and large‐scale habitat loss and fragmentation is hampering gene flow among populations. The implications of our findings for the biogeography of the Qinghai‐Tibetan Plateau, subspecies classification and conservation of red pandas are discussed.

Metabolic rates of giant pandas inform conservation strategies

The giant panda is an icon of conservation and survived a large-scale bamboo die off in the 1980s in China. Captive breeding programs have produced a large population in zoos and efforts continue to reintroduce those animals into the wild. However, we lack sufficient knowledge of their physiological ecology to determine requirements for survival now and in the face of climate change. We measured resting and active metabolic rates of giant pandas in order to determine if current bamboo resources were sufficient for adding additional animals to populations in natural reserves. Resting metabolic rates were somewhat below average for a panda sized mammal and active metabolic rates were in the normal range. Pandas do not have exceptionally low metabolic rates. Nevertheless, there is enough bamboo in natural reserves to support both natural populations and large numbers of reintroduced pandas. Bamboo will not be the limiting factor in successful reintroduction.

The minimum area requirements (MAR) for giant panda: an empirical study.

Habitat fragmentation can reduce population viability, especially for area-sensitive species. The Minimum Area Requirements (MAR) of a population is the area required for the population’s long-term persistence. In this study, the response of occupancy probability of giant pandas against habitat patch size was studied in five of the six mountain ranges inhabited by giant panda, which cover over 78% of the global distribution of giant panda habitat. The probability of giant panda occurrence was positively associated with habitat patch area, and the observed increase in occupancy probability with patch size was higher than that due to passive sampling alone. These results suggest that the giant panda is an area-sensitive species. The MAR for giant panda was estimated to be 114.7 km2 based on analysis of its occupancy probability. Giant panda habitats appear more fragmented in the three southern mountain ranges, while they are large and more continuous in the other two. Establishing corridors among habitat patches can mitigate habitat fragmentation, but expanding habitat patch sizes is necessary in mountain ranges where fragmentation is most intensive.

Highly efficient embryo germination in vitro shortens the breeding cycle in Leymus chinensis

SummaryChinese leymus is a perennial grass in the Gramineae family, which is widely distributed in Northern China and Mongolia. The breeding cycle in Chinese leymus is time-consuming because of its high level of seed dormancy. To improve the breeding process, we established a simple technique that shortens the breeding cycle by culturing immature embryos in vitro to produce plantlets immediately. This technique can potentially save 1 yr in each sexual breeding cycle. Factors affecting germination of immature embryos were evaluated. Immature embryos at different developmental stages were cultured on Murashige and Skoog basic medium. The immature embryos collected 11–16 d after pollination expressed the maximum germination rate (100%), but the maximum efficiency of recovery was observed at 15–16 d after pollination. The germination time of embryos increased and length of the germinated shoots decreased as the age of the embryos increased. All plantlets survived transplantation to the field. Two generations were obtained within 2 yr starting from immature embryo cultures, as compared to one generation using conventional breeding techniques.

Genotyping faeces of red pandas ( Ailurus fulgens ): implications for population estimation

The red panda (Ailurus fulgens) is an endangered species distributed in the Himalaya and Hengduan Mountains and extremely difficult to monitor because it is elusive, wary and nocturnal. However, recent advances in noninvasive genetics are allowing conservationists to indirectly estimate population size of this animal. Here, we present a pilot study of individual identification of wild red pandas using DNA extracted from faeces. A chain of optimal steps in noninvasive studies were used to maximize genotyping success and minimize error rate across sampling, selection of microsatellite loci, DNA extraction and amplification and data checking. As a result, 18 individual red pandas were identified successfully from 33 faecal samples collected in the field using nine red panda-specific microsatellite loci with a low probability of identity of 1.249 × 10−3 for full siblings. Multiple methods of tracking genotyping error showed that the faecal genetic profiles possessed very few genotyping errors, with an overall error rate of 1.12 × 10−5. Our findings demonstrate the feasibility and reliability of using faeces as an effective source of DNA for estimating and monitoring wild red panda populations.

Giant pandas can discriminate the emotions of human facial pictures

Previous studies have shown that giant pandas (Ailuropoda melanoleuca) can discriminate face-like shapes, but little is known about their cognitive ability with respect to the emotional expressions of humans. We tested whether adult giant pandas can discriminate expressions from pictures of half of a face and found that pandas can learn to discriminate between angry and happy expressions based on global information from the whole face. Young adult pandas (5–7 years old) learned to discriminate expressions more quickly than older individuals (8–16 years old), but no significant differences were found between females and males. These results suggest that young adult giant pandas are better at discriminating emotional expressions of humans. We showed for the first time that the giant panda, can discriminate the facial expressions of humans. Our results can also be valuable for the daily care and management of captive giant pandas.

Metabolic rate of the red panda, Ailurus fulgens, a dietary bamboo specialist

The red panda (Ailurus fulgens) has a similar diet, primarily bamboo, and shares the same habitat as the giant panda, Ailuropoda melanoleuca. There are considerable efforts underway to understand the ecology of the red panda and to increase its populations in natural reserves. Yet it is difficult to design an effective strategy for red panda reintroduction if we do not understand its basic biology. Here we report the resting metabolic rate of the red panda and find that it is higher than previously measured on animals from a zoo. The resting metabolic rate was 0.290 ml/g/h (range 0.204–0.342) in summer and 0.361 ml/g/h in winter (range 0.331–0.406), with a statistically significant difference due to season and test temperature. Temperatures in summer were probably within the thermal neutral zone for metabolism but winter temperatures were below the thermal neutral zone. There was no difference in metabolic rate between male and female red pandas and no difference due to mass. Our values for metabolic rate were much higher than those measured by McNab for 2 red pandas from a zoo. The larger sample size (17), more natural conditions at the Panda Base and improved accuracy of the metabolic instruments provided more accurate metabolism measurements. Contrary to our expectations based on their low quality bamboo diet, the metabolic rates of red pandas were similar to mammals of the same size. Based on their metabolic rates red pandas would not be limited by their food supply in natural reserves.

Using habitat models to evaluate protected area designing for giant pandas.

Abstract. Giant pandas (Ailuropoda melanoleuca) are now confined to fragmented habitats in western China, with more than 60 % of individuals inhabiting 63 protected areas. Knowledge of the environmental features required by giant pandas is critically important for protected area spatial arrangement and subsequent assessments. Here we developed a distribution model for giant pandas in the Tangjiahe Nature Reserve using Ecological Niche Factor Analysis (ENFA) model. We found that less than 40 % of this key reserve is of high suitability for giant pandas, highly suitable habitat being primarily characterized as coniferous forests away from roads within the reserve. Although there was a clear core zone occupied by giant pandas, which included the vast majority of known giant panda locations, only about 45 % of this zone was classified as highly suitable habitat (suitable and optimal). Therefore, the spatial arrangement within the reserve may need to be modified to effectively manage the remaining population of giant pandas. Of particular concern are several tourism proposals being considered by local government, which, if implemented, will increase the isolation of the local population from those in the surrounding area. Our analysis identifies Caijiaba and Baixiongping as areas that should become conservation priorities. Our approach provides valuable data to advise conservation policy and could be easily replicated across other protected areas.

Spatial genetic structure patterns of phenotype-limited and boundary-limited expanding populations: a simulation study.

Range expansions may create a unique spatial genetic pattern characterized by alternate genetically homogeneous domains and allele frequency clines. Previous attempts to model range expansions have mainly focused on the loss of genetic diversity during expansions. Using individual-based models, we examined spatial genetic patterns under two expansion scenarios, boundary-limited range expansions (BLRE) and phenotype-limited range expansions (PhLRE). Our simulation revealed that the genetic diversity within populations lost quickly during the range expansion, while the genetic difference accumulated between populations. Consequently, accompanying the expansions, the overall diversity featured a slow decrease. Specifically, during BLREs, high speed of boundary motion facilitated the maintenance of total genetic diversity and sharpened genetic clines. Very slight constraints on boundary motion of BLREs drastically narrowed the homogeneous domains and increased the allele frequency fluctuations from those levels exhibited by PhLREs. Even stronger constraints, however, surprisingly brought the width of homogeneous domains and the allele frequency fluctuations back to the normal levels of PhLREs. Furthermore, high migration rates maintained a higher total genetic diversity than low ones did during PhLREs. Whereas, the total genetic diversities during BLREs showed a contrary pattern: higher when migration was low than those when migration was high. Besides, the increase of migration rates helped maintain a greater number of homogeneous domains during PhLREs, but their effects on the number of homogeneous domains during BLREs were not monotonous. Previous studies have showed that the homogenous domains can merge to form a few broad domains as the expansion went on, leading to fewer homogeneous domains. Our simulations, meanwhile, revealed that the range expansions could also rebuild homogeneous domains from the clines during the range expansion. It is possible that that the number of homogeneous domains was determined by the interaction of merging and newly emerging homogeneous domains.