E. Nevo

RAPD polymorphism of wild emmer wheat populations, Triticum dicoccoides, in Israel

Abstract Genetic diversity in random amplified polymorphic DNAs (RAPDs) was studied in 110 genotypes of the tetraploid wild progenitor of wheat, Triticum dicoccoides, from 11 populations sampled in Israel and Turkey. Our results show high level of diversity of RAPD markers in wild wheat populations in Israel. The ten primers used in this study amplified 59 scorable RAPD loci of which 48 (81.4%) were polymorphic and 11 monomorphic. RAPD analysis was found to be highly effective in distinguishing genotypes of T. dicoccoides originating from diverse ecogeographical sites in Israel and Turkey, with 95.5% of the 100 genotypes correctly classified into sites of origin by discriminant analysis based on RAPD genotyping. However, interpopulation genetic distances showed no association with geographic distance between the population sites of origin, negating a simple isolation by distance model. Spatial autocorrelation of RAPD frequencies suggests that migration is not influential. Our present RAPD results are non-random and in agreement with the previously obtained allozyme patterns, although the genetic diversity values obtained with RAPDs are much higher than the allozyme values. Significant correlates of RAPD markers with various climatic and soil factors suggest that, as in the case of allozymes, natural selection causes adaptive RAPD ecogeographical differentiation. The results obtained suggest that RAPD markers are useful for the estimation of genetic diversity in wild material of T. dicoccoides and the identification of suitable parents for the development of mapping populations for the tagging of agronomically important traits derived from T. dicoccoides.

Adaptive optimal sound for vocal communication in tunnels of a subterranean mammal (Spalax ehrenbergi)

The adaptive value of sound signal characteristics for transmission in the underground tunnel ecotope was tested using tunnels of the solitary territorial subterranean mole rats. We analyzed the propagation of synthetic calls with various frequencies through natural tunnels along different distances. Here we present evidence that sound propagation proved efficient only across short distances (a few meters). The least attenuation of sounds occurred at low frequencies. The 440 Hz sound was transmitted better than the lower (220 Hz) or higher (880, 1760, 3520 Hz) tested frequencies. These characteristics matched perfectly with the mole rat features of vocalization and hearing, thus reflecting the operation of natural selection for adaptive vocal communication in the underground tunnel ecotope.

Ecological-genomic diversity of microsatellites in wild barley, Hordeum spontaneum, populations in Jordan.

Abstract.We analyzed the ecological-genomic diversity of microsatellites of wild barley, Hordeum spontaneum (C. Koch) Thell., at 18 loci in 306 individuals of 16 populations from Jordan across a southward transect of increasing aridity. The 18 microsatellites revealed a total of 249 alleles, with an average of 13.8 alleles per locus (range 3–29), with nonrandom distribution. The proportion of polymorphic loci per population averaged 0.91 (range 0.83–1.00); gene diversity, He, averaged 0.512 (range 0.38–0.651). We compared the number of alleles of the 18 loci to those found in Israel populations by Turpeinen et al.. Out of the 280 alleles, 138 (49.3%) were unique (i.e. occurred in only one of the countries). The percentage of unique alleles in Jordan and Israel populations was 43.0% and 17.9%, respectively, suggesting that Jordan is an important center of origin and diversity of wild barley. Estimates of mean gene diversity were highest in the populations collected near the Golan Heights, such as Shuni North, Shuni South and Jarash. Sixty nine percent of the microsatellite variation was partitioned within populations and 31% between populations. Associations between ecogeographical values and gene diversity were established for eight microsatellite loci. The cluster produced by simple sequence repeat (SSR) data is mostly coincidence with the result of the dendrogram of the Spalax ehrenbergi superspecies of subterranean mole rats in Jordan based on allozyme gene loci. The major soil type in the wild barley habitat of each ecological group was different. Stepwise multiple regression analysis indicated that the variance of gene diversity was explained by altitude (R2 = 0.362**). These observations suggest that microsatellites are at least partly adaptive and subject to natural selection. Electronic Supplementary Material is available if you access this article at http://dx.doi.org/10.1007/s00122-002-1029-7. On that page (frame on the left side), a link takes you directly to the supplementary material.

AFLP genetic polymorphism in wild barley (Hordeum spontaneum) populations in Israel

Abstract. The genetic diversity produced by the amplified fragment length polymorphism (AFLP) method was studied in 94 genotypes of wild barley, Hordeum spontaneum (C. Koch) Thell., originating from ten ecologically and geographically different locations in Israel. Eight primer pairs produced 204 discernible loci of which 189 (93%) were polymorphic. Each genotype had a unique banding profile and the genetic similarity coefficient varied between 0.74 and 0.98. The phenogram generated from these similarities by the UPGMA method did not group genotypes strictly according to their geographical origin, which pattern was also seen in the principal coordinate (PCO) plot. Genetic diversity was larger within (69%) than among (31%) populations. Associations between ecogeographical variables and the mean gene diversity were found at one primer pair. The results are discussed and compared with data obtained by the simple sequence repeat (SSR) method.

Microclimatic stress and adaptive DNA differentiation in wild emmer wheat, Triticum dicoccoides

Abstract Genetic diversity was examined by RAPD-PCR analysis in 118 registered individuals of wild emmer wheat, Triticum dicoccoides, from a microsite at Yehudiyya, northeast of the Sea of Galilee, Israel. The test involved two climatic microniches in the open oak-park forest of Quercus ithaburensis: (1) sunny between trees and (2) shady under the trees’ canopies. Comparisons were based on 97 loci amplified by 20 oligonucleotide primers. Significant genetic differentiations were found at single-, two- and multilocus structures between the neighbouring shady and sunny niches. These DNA polymorphisms appear to be associated with microclimatic stresses. The pronounced niche-effect on the significance of linkage disequilibrium and niche-specific linkage disequilibrium may suggest that natural selection directed the two-locus associations. The structure of the multilocus associations also mainly results from natural selection, and not by chance from population subdivision, or founder effects. These findings are largely parallel to the previous allozymic results at single-locus and multilocus levels. Both the DNA and the allozymic results suggest that microclimatic selection appears to play an important role in DNA differentiation as well as in protein polymophism.

Assortative mating between chromosome forms of the mole rat,Spalax ehrenbergi

Females of two parapatric chromosomal forms (2n=52 and 2n=58) of the fossorial mole rat,Spalax ehrenbergi, in Israel, were tested for mate selection between two alternative, a homo- and a heterochromosomal, males. Estrous females significantly preferred the male of their own chromosomal form, on the basis of several behavioural criteria. The evolutionary significance of the positive assortative mating found, lies presumably in reinforcing reproductive isolation between the chromosome forms, thereby contributing to finalize speciation.

“Courtship” Call of Subterranean Mole Rats (Spalax ehrenbergi): Physical Analysis

Calls used during courtship were analyzed for 59 male mole rats ( Spalax ehrenbergi ). The x ± SD of the main frequency was 568.0 ± 35.6 Hz, the lower value of the main frequency according to sonograms was 502.3 ± 36.9 Hz, and the pulse repetition rate was 23.7 ± 2.8/s. Calls are noisy, with energy spread primarily from 0.5 to 4.5 kHz. The low frequency of this call seems to be a specialization to life in underground tunnels.

Selection for class IIMhc heterozygosity by parasites in subterranean mole rats

Mhc organization and polymorphism have previously been studied26 in the four chromosomal species of theSpalax ehrenbergi superspecies in Israel, serologically, and at the DNA, RFLP and sequence levels of class I and class II genes. Here we demonstrate that the observed heterozygosity ofMhc class II genesPα1 with 11 alleles, andQβ, with at least 14 alleles, is positively and significantly correlated with infectivities of ectoparasites (gamasid mites)17 and endoparasites (helminths)18.Mhc heterozygosity is highest in the most infected area, which is in the most humid-warm region of the superspecies range, or where two zoogeographic regions overlap. We conclude that the evolutionary forces responsible for theMhc class II two-gene polymorphisms include selection for increased heterozygosity as a defense strategy against ecto- and endoparasite infections.

Spatiotemporal allozyme divergence caused by aridity stress in a natural population of wild wheat, Triticum dicoccoides, at the Ammiad microsite, Israel

Abstract Spatiotemporal diversity at 35 allozyme loci was assayed over 6 years in 1,207 individuals of wild emmer wheat (Triticum dicoccoides)from a microgeographic microsite, Ammiad, north Israel. This analysis used new methods and two additional sample sets (1988 and 1993) and previous allozymic data (1984–1987). This microsite includes four major habitats (North-facing slope, Valley, Ridge, and Karst) that show topographic and ecological heterogeneity. Significant temporal and spatial variations in allele frequencies and levels of genetic diversity were detected in the four subpopulations. Significant associations were observed among allele frequencies and gene diversities at different loci, indicating that many allele frequencies change over time in the same or opposite directions. Multiple regression analysis showed that variation in soil-water content and rainfall distribution in the growing season significantly affected 10 allele frequencies, numbers of alleles at 8 loci, and gene diversity at 4 loci. Random genetic drift and hitchhiking models may not explain such locus-specific spatiotemporal divergence and strong allelic correlation or locus correlation as well as the functional importance of allozymes. Natural ecological selection, presumably through water stress, might be an important force adaptively directing spatiotemporal allozyme diversity and divergence in wild emmer wheat at the Ammiad microsite.