Eduardo Pineda

Value of small patches in the conservation of plant-species diversity in highly fragmented rainforest.

We evaluated the importance of small (<5 ha) forest patches for the conservation of regional plant diversity in the tropical rainforest of Los Tuxtlas, Mexico. We analyzed the density of plant species (number of species per 0.1 ha) in 45 forest patches of different sizes (1-700 ha) in 3 landscapes with different deforestation levels (4, 11, and 24% forest cover). Most of the 364 species sampled (360 species, 99%) were native to the region, and only 4 (1%) were human-introduced species. Species density in the smallest patches was high and variable; the highest (84 species) and lowest (23 species) number of species were recorded in patches of up to 1.8 ha. Despite the small size of these patches, they contained diverse communities of native plants, including endangered and economically important species. The relationship between species density and area was significantly different among the landscapes, with a significant positive slope only in the landscape with the highest deforestation level. This indicates that species density in a patch of a given size may vary among landscapes that have different deforestation levels. Therefore, the conservation value of a patch depends on the total forest cover remaining in the landscape. Our findings revealed, however, that a great portion of regional plant diversity was located in very small forest patches (<5 ha), most of the species were restricted to only a few patches (41% of the species sampled were distributed in only 1-2 patches, and almost 70% were distributed in 5 patches) and each landscape conserved a unique plant assemblage. The conservation and restoration of small patches is therefore necessary to effectively preserve the plant diversity of this strongly deforested and unique Neotropical region.

Assessing the accuracy of species distribution models to predict amphibian species richness patterns

1. Evaluating the distribution of species richness where biodiversity is high but has been insufficiently sampled is not an easy task. Species distribution modelling has become a useful approach for predicting their ranges, based on the relationships between species records and environmental variables. Overlapping predictions of individual distributions could be a useful strategy for obtaining estimates of species richness and composition in a region, but these estimates should be evaluated using a proper validation process, which compares the predicted richness values and composition with accurate data from independent sources. 2. In this study, we propose a simple approach to estimate model performance for several distributional predictions generated simultaneously. This approach is particularly suitable when species distribution modelling techniques that require only presence data are used. 3. The individual distributions for the 370 known amphibian species of Mexico were predicted using maxent to model data on their known presence (66,113 presence-only records). Distributions were subsequently overlapped to obtain a prediction of species richness. Accuracy was assessed by comparing the overall species richness values predicted for the region with observed and predicted values from 118 well-surveyed sites, each with an area of c. 100 km(2), which were identified using species accumulation curves and nonparametric estimators. 4. The derived models revealed a remarkable heterogeneity of species richness across the country, provided information about species composition per site and allowed us to obtain a measure of the spatial distribution of prediction errors. Examining the magnitude and location of model inaccuracies, as well as separately assessing errors of both commission and omission, highlights the inaccuracy of the predictions of species distribution models and the need to provide measures of uncertainty along with the model results. 5. The combination of a species distribution modelling method like maxent and species richness estimators offers a useful tool for identifying when the overall pattern provided by all model predictions might be representing the geographical patterns of species richness and composition, regardless of the particular quality or accuracy of the predictions for each individual species.

Reanálisis de la diversidad alfa: alternativas para interpretar y comparar información sobre comunidades ecológicas.

El indice de entropia de Shannon y otras medidas de complejidad se utilizan frecuentemente para evaluar la diversidad de especies en comunidades ecologicas, aun cuando su comprension es dificil y sus valores no son comparables. En este trabajo se muestra que los numeros efectivos de especies (medidas de diversidad verdadera) permiten obtener una interpretacion intuitiva y facilmente comparable de la diversidad de especies. Se ejemplifica su uso reanalizando los datos de 4 trabajos publicados en la Revista Mexicana de Biodiversidad (realizados en distintos ecosistemas y regiones de Mexico, con distinta resolucion taxonomica y enfocados en distintos grupos biologicos). Se utilizan modelos de estimacion en los que se considera que las muestras son representaciones incompletas de las comunidades. Se explica tambien la manera en que las medidas de diversidad de distinto orden incorporan a las especies segun su abundancia en la comunidad. Los resultados obtenidos pueden resultar de especial interes cuando los valores de diversidad se utilizan para proponer medidas para el manejo de recursos y la conservacion biologica.

Shortcuts for biodiversity evaluation: a review of terminology and recommendations for the use of target groups, bioindicators and surrogates

The terms related to rapid alternative routes for appraising species diversity (biodiversity assessment shortcuts), through the use of biodiversity target groups, indicator groups and other biodiversity surrogates are examined. Biodiversity target groups are selected for their methodological and taxonomical advantages, and the purpose of their use is the assessment of their own diversity patterns. The focus of biodiversity indicator groups is on assessing the health of the entire ecosystem or a part of it, with respect to a visible phenomenon. Biodiversity surrogates include taxa-for-taxa surrogates, higher taxa, morphospecies and environmental surrogates. These are faster, less expensive routes for assessing general biodiversity patterns as compared with taking complete biological inventories. These concepts are clarified, examples of their use are examined and the published studies that have implemented such shortcuts are also analysed. For the selection of biological groups according to biodiversity research goals we have also proposed general recommendations.

Urban forests as hubs for novel zoonosis: blood meal analysis, seasonal variation in Culicoides (Diptera: Ceratopogonidae) vectors, and avian haemosporidians

Culicoides vectors can transmit a diverse array of parasites and are globally distributed. We studied feeding preferences and seasonal variation of Culicoides (Diptera: Ceratopogonidae) vectors in an urban forest of Germany to determine whether humans living nearby are readily exposed to vector-borne parasites from wild animals. We used a fragment of the mtDNA COI gene to identify hosts from blood meals. We amplified a fragment of the mtDNA cyt b to detect haemosporidian infections in Culicoides abdomens and thoraxes. We detected a total of 22 Culicoides species. Fifty-eight blood meals (84%) were from humans, 10 from birds, and one from livestock. We found Culicoides kibunensis (considered ornithophilic) with 29 human blood meals. Host generalist Culicoides festivipennis and Culicoides obsoletus had 14 human blood meals. Culicoides clastrieri and Culicoides semimaculatus fed on birds; previously humans were their only known host. Six thoraxes and three abdomens were infected with either Haemoproteus pallidulus or Haemoproteus parabelopolskyi. There were changes in Culicoides community structure across months. Culicoides pictipennis was the dominant species during spring, C. kibunensis and C. clastrieri were dominant during summer, and C. obsoletus was dominant by early autumn. All dominant species were generalists feeding on birds, livestock and humans. Our results indicate that humans can serve as a blood source for dominant Culicoides species instead of the normal wild animal hosts in urban areas.

Species- and community-level responses to habitat spatial changes in fragmented rainforests: assessing compensatory dynamics in amphibians and reptiles

The rapid loss and degradation of tropical forests threatens the maintenance of biodiversity across different spatial scales. Nevertheless, the extirpation and population decline of some disturbance-sensitive species may be compensated for by colonization and proliferation of disturbance-adapted species, thus allowing distributions of community-level attributes (e.g., abundance and diversity) to be preserved in human-modified tropical landscapes. To test this poorly assessed hypothesis we evaluated species- and community-level responses of amphibians and reptiles to differences in forest patch (patch size, shape, and distance to water bodies) and landscape metrics (old-growth forest cover, degree of fragmentation, and matrix composition) in the fragmented Lacandona rainforest, Mexico. We found that the abundance of several amphibian and reptile species was strongly associated with forest patch and landscape attributes, being particularly higher in larger patches surrounded by a greater forest cover. Such changes at the species level generated notable changes in reptile communities. In particular, the abundance, diversity, and evenness of reptile communities were strongly related to patch size, patch shape, and matrix composition. Yet, because of compensatory dynamics in amphibians, this group showed weak responses at the community level. Despite such compensatory dynamics, our results indicate that forest loss at the patch and landscape levels represents the main threat to both amphibians and reptiles, thus indicating that to preserve herpetological communities in this biodiversity hotspot, conservation initiatives should be focused on preventing further deforestation.

Multi-taxonomic diversity patterns in a neotropical green city: a rapid biological assessment

The growing number of urban ecology studies has raised concern about the importance of comprehending the ecological patterns and processes of urban areas in order to manage and plan them properly. In this study, we performed a rapid descriptive ecological assessment of the biodiversity patterns in a neotropical mid-sized urban area from a multi-taxonomic approach, contrasting seven taxonomic groups (i.e., vascular plants, fungi, ants, butterflies, beetles, amphibians, birds) in areas with different degree of urbanization intensity. Results of this study show that diversity patterns differ depending on the taxonomic group; thus, it was not possible to generalize specific trends in species richness, abundance, and species composition because each taxon seems to respond differently to the process or level of urbanization. Our results also highlight the relevance of using multi-taxonomic approaches to understand the relationship between biodiversity and urban environments, and underline potential benefits and limitations of using each of the studied groups when considering rapid biodiversity assessments. Based on our results, we suggest the following recommendations when performing rapid biological assessments in urban areas: evaluate as many taxa as possible, choosing the set of taxonomic groups in relation to the objectives of the study, wide the temporal and spatial survey window as much as possible, focus on several biodiversity measures, and interpreting results cautiously, as rapid assessments do not necessarily reflect ecological patterns, but just part of the history.

Instability of copronecrophagous beetle assemblages (Coleoptera: Scarabaeinae) in a mountainous tropical landscape of Mexico.

Abstract We analyzed changes over time in species composition and functional guild structure (temporal beta diversity) for natural assemblages and those modified by humans in a fragmented, tropical mountain landscape. The assemblages belong to cloud forests (the original vegetation type), secondary forests, traditional shaded coffee plantations, commercial shaded coffee plantations, and a cattle pasture. Copronecrophagous beetles, subfamily Scarabaeinae (Insecta: Coleoptera: Scarabaeidae), were used as the indicator group. This group has been used in previous studies and other tropical forests and has been found to be a good indicator of the effects of anthropogenic change. For each assemblage, we compared samples that were collected several years apart. Changes were found in species composition, order of abundance, and in the proportion that a given species is present in the different functional groups. The changes that occurred between samplings affected the less abundant species in the cloud forest and in the pasture. In the other vegetation types, both abundant and less abundant species were affected. Their order of abundance and proportion in the different guilds also changed. This study shows that, although landscape richness remains relatively constant, richness at the local level (alpha diversity) changes notably even over short lapses of time. This could be a characteristic of landscapes with intermediate degrees of disturbance (such as those that have been partially modified for human use), where assemblage composition is very fluid.

Importance of riparian remnants for frog species diversity in a highly fragmented rainforest

Tropical forests undergo continuous transformation to other land uses, resulting in landscapes typified by forest fragments surrounded by anthropogenic habitats. Small forest fragments, specifically strip-shaped remnants flanking streams (referred to as riparian remnants), can be particularly important for the maintenance and conservation of biodiversity within highly fragmented forests. We compared frog species diversity between riparian remnants, other forest fragments and cattle pastures in a tropical landscape in Los Tuxtlas, Mexico. We found similar species richness in the three habitats studied and a similar assemblage structure between riparian remnants and forest fragments, although species composition differed by 50 per cent. Frog abundance was halved in riparian remnants compared with forest fragments, but was twice that found in pastures. Our results suggest that riparian remnants play an important role in maintaining a portion of frog species diversity in a highly fragmented forest, particularly during environmentally stressful (hot and dry) periods. In this regard, however, the role of riparian remnants is complementary, rather than substitutive, with respect to the function of other forest fragments within the fragmented forest.

Amphibian Diversity and Threatened Species in a Severely Transformed Neotropical Region in Mexico

Many regions around the world concentrate a large number of highly endangered species that have very restricted distributions. The mountainous region of central Veracruz, Mexico, is considered a priority area for amphibian conservation because of its high level of endemism and the number of threatened species. The original tropical montane cloud forest in the region has been dramatically reduced and fragmented and is now mainly confined to ravines and hillsides. We evaluated the current situation of amphibian diversity in the cloud forest fragments of this region by analyzing species richness and abundance, comparing assemblage structure and species composition, examining the distribution and abundance of threatened species, and identifying the local and landscape variables associated with the observed amphibian diversity. From June to October 2012 we sampled ten forest fragments, investing 944 person-hours of sampling effort. A total of 895 amphibians belonging to 16 species were recorded. Notable differences in species richness, abundance, and assemblage structure between forest fragments were observed. Species composition between pairs of fragments differed by an average of 53%, with the majority (58%) resulting from species replacement and the rest (42%) explained by differences in species richness. Half of the species detected are under threat of extinction according to the International Union for Conservation of Nature, and although their distribution and abundance varied markedly, there were also ubiquitous and abundant species, along with rare species of restricted distribution. The evident heterogeneity of the ten study sites indicates that to conserve amphibians in a mountainous region such as this one it is necessary to protect groups of fragments which represent the variability of the system. Both individually and together cloud forest fragments are very important to conservation because each remnant is inhabited by several threatened species, some of them at imminent risk of extinction.