Elizabeth Ann Veasey

Genetic diversity in Brazilian sweet potato (Ipomoea batatas (L.) Lam., Solanales, Convolvulaceae) landraces assessed with microsatellite markers

We used simple sequence repeat (SSR) markers to investigate the genetic diversity of 78 sweet potato (Ipomoea batatas) accessions (58 landraces and 20 putative clones) from traditional agricultural households from 19 local communities in the Vale do Ribeira, Sao Paulo, Brazil. Eight SSR loci were assessed using 6% (w/v) polyacrylamide gels stained with silver nitrate and the accessions genotyped considering the presence or absence of bands. The results were subjected to analysis of molecular variance (AMOVA), and cluster and principal coordinate analyses. Spatial structure was assessed using Mantels test to compare genetic and geographic distances. Each primer pair generated between three and ten clearly scorable polymorphic fragments. Cluster analyses showed a Jaccards index from 0.3 to 1.0, indicating high genetic and intravarietal diversity. Accessions from all 19 communities were not spatially structured (r = 0.15, p < 0.054), with AMOVA indicating that most of the variability (58.2%) was distributed within households and only 18.1% of the variability was distributed between households within communities. The outcrossing mating system of sweet potato, and anthropic factors such as selection of different varieties and their maintenance within household small plots and home gardens, as well as an extensive exchange system between agriculturists, may all be contributing to these results.

Germplasm characterization of Sesbania accessions based on multivariate analyses

Nineteen Sesbania accessions were investigated, in a total of six species, to characterize the accessions based on morphological and agronomic data using multivariate methods, to identify a core set of morphological and agronomic attributes to be used in germplasm characterization of Sesbania spp., and to evaluate the forage potential of these accessions. Plots, in randomized block design, consisted of single 16 m-long rows of eight plants, spaced at 2 m between plants and 3 m between rows. Morphological data were obtained from the first four plants in each plot. The four remaining plants, submitted to four cuts at a height of 1 m, provided agronomic data. Principal component analysis indicated that variance accumulated by the first two components for morphological and agronomic data was 74.4% and 77.0%, respectively. Two large groups of accessions were formed in the cluster analysis for morphological data, one consisting of S. virgata, subgenus Daubentonia and the second group comprising the other five species. Cluster analysis using agronomic data classified higher yielding perennial species in three groups, and the annual species, which stood out principally in relation to seed production, in three other groups. Accession n° 8 of S. sesbanwas classified in an isolated group due to its forage superiority. A character discard resulted in the selection of eight characters: floral initiation, pod and leaf length, number of leaflet pairs, plant regrowth height, leaf dry matter yield, seed production and vigour, indicated as a core set of attributes for Sesbania germplasm characterization.

Genetic characterization of cassava ( Manihot esculenta ) landraces in Brazil assessed with simple sequence repeats

Based on nine microsatellite loci, the aim of this study was to appraise the genetic diversity of 42 cassava (Manihot esculenta) landraces from selected regions in Brazil, and examine how this variety is distributed according to origin in several municipalities in the states of Minas Gerais, São Paulo, Mato Grosso do Sul, Amazonas and Mato Grosso. High diversity values were found among the five above-mentioned regions, with 3.3 alleles per locus on an average, a high percentage of polymorphic loci varying from 88.8% to 100%, an average of 0.265 for observed heterozygosity and 0.570 for gene diversity. Most genetic diversity was concentrated within the regions themselves (HS = 0.52). Cluster analysis and principal component based scatter plotting showed greater similarity among landraces from São Paulo, Mato Grosso do Sul and Amazonas, whereas those from Minas Gerais were clustered into a sub-group within this group. The plants from Mato Grosso, mostly collected in the municipality of General Carneiro, provided the highest differentiation. The migration of human populations is one among the possible reasons for this closer resemblance or greater disparity among plants from the various regions.

Phenology and morphological diversity of sweet potato (Ipomoea batatas) landraces of the Vale do Ribeira

The phenotypic diversity of sweet potato (Ipomoea batatas) landraces was assessed using morphological traits, verifying how this diversity is distributed among the households and settlements of the Vale do Ribeira, Brazil. A total of 74 accessions, involving 53 landraces, collected from 30 households distributed among 18 settlements that practice traditional agriculture in the municipalities of Iguape, Ilha Comprida, and Cananeia, as well as four commercial varieties acquired in markets of Iguape and Piracicaba, were evaluated under an ex situ experimental condition in Piracicaba, SP, Brazil. Nine phenological and floral descriptors, nine morphological vegetative aerial descriptors and five storage root traits were recorded. The 14 aerial vegetative and root descriptors were evaluated as binary data, totaling 74 attributes. Cluster analyses were made using the Jaccard similarity index and the UPGMA (unweighted pair group method with arithmetic mean) agglomerative method. Binary data was also submitted to a variance analysis (AMOVA). No defined groups were observed, indicating that the diversity of the landraces is not structured in space, but considerable morphological variation was found in this area (Jaccard similarity index varying from 0.12 to 1.0). Most of the variability occurred within households (64.4%), followed by the distribution among households within settlements (27.1%) and among settlements (8.4%). Thus, the traditional agriculturists of Vale do Ribeira maintain a high morphological diversity for sweet potato within their households, which can be assumed to be produced by the outcrossing mating system of this species and somatic mutation events, as well as the exchange system at local and regional levels.

Diversidade genética de populações de andiroba no Baixo Acre

Abstract€–€The€objective of this work was to evaluate the genetic diversity of two Carapa guianensis Aubl.(crabwood) populations, in the S tate of Acre, Brazil, and to compare the diversity estimations with those obtainedin other populations of the species (in Brazil: Flona Tapajos, PA, Porto Acre, AC; and in Costa Rica). Seventy-seven individuals were assessed using seven polymorphic microsatellite loci. Fifty-one alleles were observed inthe two populations, in which the effective number of alleles per locus (A ^ e €=€3.2) was lower than the averagenumber of alleles per locus (A ^ €=€7.3), which indicates a high number of low frequency alleles. The estimatedf ^ values did not differ from zero, showing that inbreeding does not occur in these populations. The apparentoutcrossing rate was high for both populations ( t ^ a €=€1.1 1 in Porto Acre population, and t ^ a €=€0.88 in Rio Branco),indicating that this species reproduces by outcrossing. Comparing the estimates of A ^ e , H ^

Genetic structure of Brazilian wild rice (Oryza glumaepatula Steud., Poaceae) populations analyzed using microsatellite markers

Knowledge of the genetic structure and diversity of natural populations is important in developing strategies for in situ and ex situ conservation. We used eight microsatellite loci to estimate genetic structure and investigate within and between population genetic variation in eleven Brazilian wild rice (Oryza glumaepatula) populations. The study showed the following genetic diversity parameters: average number of 3.1 alleles per locus; 77.3% polymorphic loci; 0.091 observed heterozygosity and 0.393 gene diversity. F-statistics detected by microsatellite loci were: FST = 0.491 (and RST = 0.608), FIS = 0.780 and FIT = 0.888. No population was in Hardy-Weinberg equilibrium. The estimated apparent outcrossing rate (0.143) indicated a predominance of self-fertilization. The gene flow values were low (Nm = 0.259 and 0.161 for FST and RST, respectively). Populations were spatially structured but without a correlation between genetic and geographic distances. Five populations (PG-4, PG-2, PU-1, SO-4, NE-18) were identified as priorities for conservation strategies. Populations from the Amazon biome showed heterogeneity with respect to intrapopulation diversity. The high level of genetic differentiation between populations and the high number of private alleles suggested that sampling should be carried out on a large number of O. glumaepatula populations for ex situ conservation purposes.

Variabilidade da dormência de sementes entre e dentro de espécies de Sesbania

Seed dormancy variability was analised among species and families of Sesbania SCOP. Thirteen families of the following five Sesbania species were evaluated: S. rostrata, S. exasperata, S. tetraptera, S. sesban and S. virgata. The trial was conducted at 20-30°C, for 15 days, in a completely randomized design with three replications of 50 seeds each. An analysis of variance was conducted unfolding the degrees of freedom of families within species. The coefficients of intraspecific genetic variation (CVgi) and genotypic determination (b) were estimated. Germination rates, measured indirectly by the average germination time, were also evaluated. High variability for seed dormancy was observed among species (P<0.01) and among families (P<0.01). S. virgata and S. tetraptera presented the highest dormancy, with average germination of 13.5 and 13.9%, respectively, while S. rostrata and S. sesban showed the lowest dormancy, with average germination of 68.3 and 60.5%. The estimated values of CVgi were low for all species, varying from 9.9 to 14.9%, indicating that most of the variability found in relation to dormancy in these populations is due to non-genetic factors. The estimated values of b were higher for S. tetraptera (b = 0.6769), S. sesban (b = 0.6332) and S. exasperata (b = 0.6306), indicating a possibility of selection for higher or lower dormancy levels. As for the germination rates, S. virgata was the slowest, in contrast with S. tetraptera and S. sesban, which presented the fastest germination rates. No significant differences for germination rates were observed among families.

Morphological and molecular diversity among cassava genotypes

The objective of this work was to characterize morphologically and molecularly the genetic diversity of cassava accessions, collected from different regions in Brazil. A descriptive analysis was made for 12 morphological traits in 419 accessions. Data was transformed into binary data for cluster analysis and analysis of molecular variance. A higher proportion of white or cream (71%) root cortex color was found, while flesh colors were predominantly white (49%) and cream (42%). Four accession groups were classified by the cluster analysis, but they were not grouped according to their origin, which indicates that diversity is not structured in space. The variation was greater within regions (95.6%). Sixty genotypes were also evaluated using 14 polymorphic microsatellite markers. Molecular results corroborated the morphological ones, showing the same random distribution of genotypes, with no grouping according to origin. Diversity indices were high for each region, and a greater diversity was found within regions, with: a mean number of alleles per locus of 3.530; observed and expected heterozygosity of 0.499 and 0.642, respectively; and Shannon index of 1.03. The absence of spatial structure among cassava genotypes according to their origins shows the anthropic influence in the distribution and movement of germplasm, both within and among regions.

Morphoagronomic genetic diversity in american wild rice species

To characterize the genetic variability among species and populations of South American wild rice, eleven populations of Oryza glumaepatula, seven of O. grandiglumis, four of O. latifolia and one of O. alta, from Brazil and Argentina, were evaluated. A greenhouse experiment was conducted in completely randomized blocks with 23 treatments. Twenty morphoagronomic traits were assessed. Univariate analyses were performed with 16 quantitative traits with the partitioning of populations within species. Significant differences (p<0.001) between species were observed for all the traits as well as among populations within the species. The most variable was O. glumaepatula followed by O. latifolia. Multivariate discriminant canonical and cluster analyses confirmed the separation of the highly diverse O. glumaepatula populations from the tetraploid species, and the high genetic variation among O. latifolia populations. Morphological differences among the three tetraploid species seemed to be enough to ascribe them at least the condition of species in statu nascendi.

Agro-morphological characterization of upland rice accessions

The agro-morphological characterization is fundamental in order to provide information for plant breeding programs. The aim of the present study was to characterize 146 accessions of upland rice (Oryza sativa L.), based on qualitative and quantitative agro-morphological descriptors. The experiment was conducted in Recife, state of Pernambuco, Brazil, using a randomized block design with three replicates. Polymorphism was observed among 12 of 14 qualitative characters evaluated, whereas significant differences (p < 0.05) were observed for 11 of the 14 analysed quantitative traits. Genetic variance was higher than environmental variance and the average inheritability coefficients were above 80 % for all characters, which ensures the predominance of the genetic components in the differences observed among accessions. On the cluster analysis for qualitative traits the accessions were classified in two groups with a total of 18 duplicates, whereas for the quantitative traits three groups were obtained with few subgroups. The principal component analysis for quantitative traits showed great dispersion of the accessions. The most divergent group of accessions included the genotypes Mitsukasane, Mie, Tomoe mochi, Ooba kirishima and Nourin mochi 6, which showed a higher number of spicklets per plant. There is high variability among the rice accessions from the germplasm collection studied, which presents great importance for breeding programs or for genetic studies on this species.