Elizabeth M. Bach

A long-term nitrogen fertilizer gradient has little effect on soil organic matter in a high-intensity maize production system

Global maize production alters an enormous soil organic C (SOC) stock, ultimately affecting greenhouse gas concentrations and the capacity of agroecosystems to buffer climate variability. Inorganic N fertilizer is perhaps the most important factor affecting SOC within maize-based systems due to its effects on crop residue production and SOC mineralization. Using a continuous maize cropping system with a 13 year N fertilizer gradient (0-269 kg N ha(-1) yr(-1)) that created a large range in crop residue inputs (3.60-9.94 Mg dry matter ha(-1) yr(-1)), we provide the first agronomic assessment of long-term N fertilizer effects on SOC with direct reference to N rates that are empirically determined to be insufficient, optimum, and excessive. Across the N fertilizer gradient, SOC in physico-chemically protected pools was not affected by N fertilizer rate or residue inputs. However, unprotected particulate organic matter (POM) fractions increased with residue inputs. Although N fertilizer was negatively linearly correlated with POM C/N ratios, the slope of this relationship decreased from the least decomposed POM pools (coarse POM) to the most decomposed POM pools (fine intra-aggregate POM). Moreover, C/N ratios of protected pools did not vary across N rates, suggesting little effect of N fertilizer on soil organic matter (SOM) after decomposition of POM. Comparing a N rate within 4% of agronomic optimum (208 kg N ha(-1) yr(-1)) and an excessive N rate (269 kg N ha(-1) yr(-1)), there were no differences between SOC amount, SOM C/N ratios, or microbial biomass and composition. These data suggest that excessive N fertilizer had little effect on SOM and they complement agronomic assessments of environmental N losses, that demonstrate N2 O and NO3 emissions exponentially increase when agronomic optimum N is surpassed.

A time for every season: soil aggregate turnover stimulates decomposition and reduces carbon loss in grasslands managed for bioenergy

A primary goal of many next‐generation bioenergy systems is to increase ecosystem services such as soil carbon (C) storage and nutrient retention. Evaluating whether bioenergy management systems are achieving these goals is challenging in part because these processes occur over long periods of time at varying spatial scales. Investigation of microbially mediated soil processes at the microbe scale may provide early insights into the mechanisms driving these long‐term ecosystem services. Furthermore, seasonal fluctuations in microbial activity are rarely considered when estimating whole ecosystem functioning, but are central to decomposition, soil structure, and realized C storage. Some studies have characterized extracellular enzyme activity within soil structures (aggregates); however, seasonal variation in decomposition at the microscale remains virtually unknown, particularly in managed ecosystems. As such, we hypothesize that temporal variation in aggregate turnover is a strong regulator of microbial activity, with important implications for decomposition and C and nitrogen (N) storage in bioenergy systems. We address variation in soil microbial extracellular enzyme activity spatially across soil aggregates and temporally across two growing seasons in three ecosystems managed for bioenergy feedstock production: Zea mays L. (corn) agroecosystem, fertilized and unfertilized reconstructed tallgrass prairie. We measured potential N‐acetyl‐glucosaminidase (NAG), β‐glucosidase (BG), β‐xylosidase (BX), and cellobiohydrolase (CB) enzyme activity. Aggregate turnover in prairie systems was driven by precipitation events and seasonal spikes in enzyme activity corresponded with aggregate turnover events. In corn monocultures, soil aggregates turned over early in the growing season, followed by increasing, albeit low, enzyme activity throughout the growing season. Independent of management system or sampling date, NAG activity was greatest in large macroaggregates (>2000 μm) and CB activity was greatest in microaggregates (<250 μm). High microbial activity coupled with greater aggregation in prairie bioenergy systems may reduce loss of soil organic matter through decomposition and increase soil C storage.

Belowground Ecosystem Recovery During Grassland Restoration: South African Highveld Compared to US Tallgrass Prairie

Conversion of cultivated land to grassland is globally practiced to reverse soil degradation, but belowground ecosystem response to restoration has never been compared between old and new world temperate grasslands. We used a chronosequence approach to model change in root biomass and quality (indexed by C:N ratio), microbial biomass and composition [indexed by phospholipid fatty acids (PLFAs)], soil aggregate structure, and soil C and N stocks in the South African Highveld and compared recovery of these variables to a grassland restoration chronosequence in the US tallgrass prairie. We hypothesized soil C recovery, and mechanisms promoting soil C and N accrual would be convergent between these distant temperate grasslands with similar growing season precipitation, history of cultivation, and undergoing restoration with C4-grasses. Total PLFA richness and concentrations of most microbial groups rose to represent uncultivated grassland in the highveld (similar to tallgrass prairie), but in contrast to tallgrass prairie, the fungi:bacteria ratio did not increase with restoration age. In the highveld, root biomass accumulation was lower, but root quality became more representative of the never-cultivated grassland than in restorations in tallgrass prairie. Soil aggregate recovery was slightly faster in tallgrass prairie, and the pattern of macroaggregate C recovery was divergent due to less depletion in cultivated soil and higher stock of C in the uncultivated soil relative to the highveld. More rapid restoration of total soil C and N stocks in the highveld was attributed to greater soil C saturation deficit at the onset of restoration, development of higher quality root systems that promote the microbial biomass and soil aggregation, and climate conditions (distinct periodicity of rainfall and high aridity) that likely impose more limitation to decomposition relative to the tallgrass prairie ecosystem.

Coupled Carbon and Nitrogen Inputs Increase Microbial Biomass and Activity in Prairie Bioenergy Systems

Soil microorganisms drive cycling and storage of soil carbon (C) and nitrogen (N) through decomposition of plant root and litter inputs. However, microbial activities vary greatly in time and space as well as with land management. The goal of this study was to address the seasonal role of microbial activity in soil C and N storage and cycling in harvested prairie and corn ecosystems. We measured extracellular enzyme activity, microbial biomass, extractable soil C and N, and total soil C and N at monthly intervals across two growing seasons in fertilized and unfertilized planted tallgrass prairie and compared them with a continuous Zea mays (corn) row-crop agroecosystem. Prairie systems supported greater microbial biomass and enzyme activity compared with corn systems; fertilized prairie systems had greater microbial activity than unfertilized prairies. The magnitude, and in some cases direction, of differences in response variables among the three managed systems changed seasonally. Overall, microbial biomass and enzyme activity were stimulated by increased C inputs (roots) in prairies and were further enhanced with N additions in fertilized prairies. Furthermore, seasonal fluctuation in microbial activity underscores the importance of considering when soils are sampled to estimate and predict patterns in microbially driven C and N cycling at the ecosystem level.

Spatial Structuring of Cellulase Gene Abundance and Activity in Soil

Microbial mechanisms controlling cellulose degradation in soil habitats remains a critical knowledge gap in understanding and modeling terrestrial carbon-cycling. We investigated land management and soil micro-habitat influences on soil bacterial communities and distribution of cellulose-degrading enzyme genes in three bioenergy cropping systems (corn, prairie, and fertilized prairie). Within the soil, aggregates have been examined as potential micro- habitats with specific characteristics influencing resource partitioning and regulation and consequently studied soil aggregate fractions from the fertilized prairie system. Soil bacterial communities and carbon-cycling gene presence varied across land management and soil microhabitats. Examination of genes specifically involved in cellulose-degradation pathways showed high levels of redundancy across the bioenergy cropping systems, but medium macroaggregates (1000-2000 um) supported greater cellulose-degrading enzyme gene abundance than other aggregate fractions and whole soil. Despite similar bacterial diversity among fertilized prairie aggregates, functional potential within the medium aggregates were predominantly associated with Actinobacteria and Proteobacteria. These findings represent gentic potential only, and our previous work on the same samples found elevated cellulase exo-enzyme activity in microaggregates. These contrasting results emphasize the importance of measuring community, functional genes, and metabolic potentials in a coordinated manner. Together, these data indicate that location within the soil matrix matters. Overall, our results indicate that soil aggregate environments are hot-spots that select for organisms with functional attributes like cellulose degradation, and future work should further explore micro-environmental factors that affect realized C-cycling processes.