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Dive into the research topics where Emer Rogan is active.

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Featured researches published by Emer Rogan.


Science of The Total Environment | 1999

Investigating potential associations between chronic exposure to polychlorinated biphenyls and infectious disease mortality in harbour porpoises from England and Wales

Paul D. Jepson; Peter M. Bennett; Colin R. Allchin; Robin J. Law; Thijs Kuiken; J.R. Baker; Emer Rogan; James K. Kirkwood

Bioaccumulation of immunosuppressive organochlorines like polychlorinated biphenyls (PCBs) may pose a threat to the health and viability of cetacean populations. To investigate possible associations between chronic exposure to PCBs and infectious disease mortality in harbour porpoises Phocoena phocoena in UK waters, blubber concentrations of 25 individual chlorobiphenyl (CB) congeners in 34 healthy harbour porpoises that died due to physical trauma (mainly by-catch) were compared with CB concentrations in 33 animals that died due to infectious disease. The infectious disease group had significantly greater total 25 CBs (sigma 25CBs) concentrations than the physical trauma group (P < 0.001). The mean sigma 25CBs concentration in animals that died due to physical trauma was 13.6 mg kg-1 extractable lipid whereas the mean concentration in the infectious disease group was 31.1 mg kg-1 extractable lipid. The relationship between higher sigma 25CBs and the infectious disease group was not confounded by age, sex, nutritional status, season, location or year of stranding. In addition, adult females had significantly lower sigma 25CBs levels than adult males (P < 0.05) due to maternal transfer of CBs to offspring. These findings are consistent with the hypothesis that chronic PCB exposure predisposes harbour porpoises in UK waters to infectious disease mortality, although further research is required to test these associations more robustly.


Environmental Pollution | 2001

Exposure to heavy metals and infectious disease mortality in harbour porpoises from England and Wales

Peter M. Bennett; Paul D. Jepson; Robin J. Law; B.R. Jones; Thijs Kuiken; J.R. Baker; Emer Rogan; James K. Kirkwood

We investigate whether long-term exposure to heavy metals, including immunosuppressive metals like mercury (Hg), is associated with infectious disease in a wild cetacean. Post-mortem investigations on 86 harbour porpoises, Phocoena phocoena, found dead along the coasts of England and Wales revealed that 49 of the porpoises were healthy when they died as a consequence of physical trauma (most frequently entrapment in fishing gear). In contrast, 37 porpoises died of infectious diseases caused by parasitic, bacterial, fungal and viral pathogens (most frequently pneumonia caused by lungworm and bacterial infections). We found that mean liver concentrations of Hg, selenium (Se), the Hg:Se molar ratio, and zinc (Zn) were significantly higher in the propoises that died of infectious disease compared to healthy porpoises that died from physical trauma. Liver concentrations of lead (Pb), cadmium (Cd), copper (Cu) and chromium (Cr) did not differ between the two groups. Hg, Se, and the Hg:Se molar ratio were also positively correlated with age. The association between Zn concentration and disease status may result from Zn redistribution in response to infection. Further work is required to evaluate whether chronic exposure to Hg may have presented a toxic challenge to the porpoises that succumbed to infectious disease.


Chemosphere | 2002

Polybrominated diphenyl ethers in two species of marine top predators from England and Wales

Robin J. Law; Colin R. Allchin; M.E Bennett; Steve Morris; Emer Rogan

During an earlier study, polybrominated diphenyl ethers were detected at high concentrations in fish and sediments downstream of a manufacturing site in NE England. We have now undertaken analysis of 14 tri- to heptabromodiphenyl ether congeners in tissues of two species of marine top predators exposed to these compounds through their consumption of fish. In this paper we report data for 47 cormorants and 60 harbour porpoises from England and Wales, sampled during the period 1996-2000. Concentrations of the summed congeners ranged from 1.8 to 140 microg kg(-1) wet weight in cormorant livers, and from not detected to 6900 microg kg(-1) wet weight in porpoise blubber. The major congeners present were generally BDE47, BDE99 and BDE100. There was little correlation between concentrations of chlorobiphenyls (as the sum of 25 individual congeners) and the sum of the 14 BDE congeners determined, particularly for the porpoises.


Marine Environmental Research | 2003

Marine mammals from northeast atlantic: relationship between their trophic status as determined by δ13C and δ15N measurements and their trace metal concentrations

Krishna Das; Cristina Beans; Ludo Holsbeek; Gérard Mauger; Simon Berrow; Emer Rogan; Jean-Marie Bouquegneau

The relationship between trophic position through delta13C and delta15N and trace metal concentrations (Zn, Cd, Cu and Hg) was investigated in the tissues of six marine mammal species from the Northeast Atlantic: striped dolphin Stenella coeruleoalba, common dolphin, Delphinus delphis, Atlantic white-sided dolphin Lagenorhynchus acutus, harbour porpoise Phocoena phocoena, white beaked-dolphin Lagenorhynchus albirostris, grey seal Halichoerus grypus stranded on French Channel and Irish coasts. White-beaked dolphins, harbour porpoises, white-sided dolphins, common and striped dolphins display the same relative and decreasing trophic position, as measured by delta15N values, along both the Irish and French channel coasts, reflecting conservative trophic habits between these two places. Hepatic and renal Cd concentrations were significantly correlated to muscle delta13C and delta15N values while Hg, Zn and Cu did not. These results suggest that Cd accumulation is partly linked to the diet while other factors such as age or body condition might explain Hg, Zn or Cu variability in marine mammals. Combined stable isotope and trace metal analyses appear to be useful tools for the study of marine mammal ecology.


Molecular Ecology | 2011

Genetic differentiation among North Atlantic killer whale populations

Andrew D. Foote; Julia T. Vilstrup; Renaud de Stephanis; Sandra C. Abel Nielsen; Robert Deaville; Lars Kleivane; Patrick J. O. Miller; Nils Øien; Robert J. Reid; Kelly M. Robertson; Emer Rogan; Tiu Similä; Maria L. Tejedor; Heike Vester; M. Thomas P. Gilbert; Stuart B. Piertney; Americo Vespucio S; N. Torres

Population genetic structure of North Atlantic killer whale samples was resolved from differences in allele frequencies of 17 microsatellite loci, mtDNA control region haplotype frequencies and for a subset of samples, using complete mitogenome sequences. Three significantly differentiated populations were identified. Differentiation based on microsatellite allele frequencies was greater between the two allopatric populations than between the two pairs of partially sympatric populations. Spatial clustering of individuals within each of these populations overlaps with the distribution of particular prey resources: herring, mackerel and tuna, which each population has been seen predating. Phylogenetic analyses using complete mitogenomes suggested two populations could have resulted from single founding events and subsequent matrilineal expansion. The third population, which was sampled at lower latitudes and lower density, consisted of maternal lineages from three highly divergent clades. Pairwise population differentiation was greater for estimates based on mtDNA control region haplotype frequencies than for estimates based on microsatellite allele frequencies, and there were no mitogenome haplotypes shared among populations. This suggests low or no female migration and that gene flow was primarily male mediated when populations spatially and temporally overlap. These results demonstrate that genetic differentiation can arise through resource specialization in the absence of physical barriers to gene flow.


Journal of the Marine Biological Association of the United Kingdom | 2007

Using T-PODs to investigate the echolocation of coastal bottlenose dolphins

E. Philpott; Anneli Englund; Simon N. Ingram; Emer Rogan

We investigated the feasibility of using a T-POD, a passive acoustic dolphin detector system, to monitor bottlenose dolphins in the Shannon Estuary, Ireland, from 27 June to 18 August 2005. A v.3 T-POD, logging alternate minutes, was moored in view of an observation site. Land-based theodolite tracking was used to record the position of the closest animal, school size and activity of the closest dolphin school to the T-POD. All cetacean detections on the T-POD synchronous with shore watches in sea states ≤2 were analysed. A total of 94 schools were observed at distances up to 8000 m from the observer. Acoustic detections corresponded well with visual detections, with 82% of the dolphin schools observed within 500 m of the T-POD detected acoustically. The furthest distance dolphins were observed from the T-POD during periods of acoustic detection was 1246 m. Twelve acoustic encounters were logged without corresponding visual detections, four of which may represent false positives. School size did not affect the acoustic detectability of the dolphins, as there was no difference in the size of schools observed with or without corresponding acoustic detections (Kruskal–Wallis, P =0.64). Similarly no relationship was found between acoustic detections and school sizes at different distances to the T-POD (linear regression P =0.5, r 2 =0.01). Acoustic encounters did not vary in relation to diel patterns (Mann–Whitney, P =0.13) but were related to tidal state (χ 2 =40.2, P =0.00, df=11) with more encounters logged in the 4 h after high water, probably reflecting prey-related changes in habitat use. T-POD detections correlated well with visual observations and although detection is likely to vary according to T-POD specification, sensitivity and the conditions at the deployment site, the T-POD is a useful tool that has been shown to offer the possibility of continuous monitoring, something that is difficult to achieve with visual methods alone.


Proceedings of the Royal Society of London. Series B, Biological Sciences | 2010

Genetic and historic evidence for climate-driven population fragmentation in a top cetacean predator: the harbour porpoises in European water

Michael Fontaine; Krystal A. Tolley; Johan Michaux; Alexei Birkun; Marisa Ferreira; Thierry Jauniaux; Ángela Llavona; Bayram Öztürk; Ayaka Amaha Öztürk; Vincent Ridoux; Emer Rogan; Marina Sequeira; Jean-Marie Bouquegneau; Stuart J. E. Baird

Recent climate change has triggered profound reorganization in northeast Atlantic ecosystems, with substantial impact on the distribution of marine assemblages from plankton to fishes. However, assessing the repercussions on apex marine predators remains a challenging issue, especially for pelagic species. In this study, we use Bayesian coalescent modelling of microsatellite variation to track the population demographic history of one of the smallest temperate cetaceans, the harbour porpoise (Phocoena phocoena) in European waters. Combining genetic inferences with palaeo-oceanographic and historical records provides strong evidence that populations of harbour porpoises have responded markedly to the recent climate-driven reorganization in the eastern North Atlantic food web. This response includes the isolation of porpoises in Iberian waters from those further north only approximately 300 years ago with a predominant northward migration, contemporaneous with the warming trend underway since the ‘Little Ice Age’ period and with the ongoing retreat of cold-water fishes from the Bay of Biscay. The extinction or exodus of harbour porpoises from the Mediterranean Sea (leaving an isolated relict population in the Black Sea) has lacked a coherent explanation. The present results suggest that the fragmentation of harbour distribution range in the Mediterranean Sea was triggered during the warm ‘Mid-Holocene Optimum’ period (approx. 5000 years ago), by the end of the post-glacial nutrient-rich ‘Sapropel’ conditions that prevailed before that time.


Journal of the Marine Biological Association of the United Kingdom | 2002

Additional notes on stomach contents of sperm whales Physeter macrocephalus stranded in the north-east Atlantic

M.B. Santos; Graham J. Pierce; M. García Hartmann; C. Smeenk; M.J. Addink; T. Kuiken; Robert J. Reid; I.A.P. Patterson; Colm Lordan; Emer Rogan; E. Mente

The stomach contents of seven male sperm whales Physeter macrocephalus (Odontoceti: Physeteridae) from the north-east Atlantic were examined. One animal was stranded on 27 November 1997 near Wassenaar (the Netherlands). Four became stranded the following day, 28 November 1997, on the island of Ameland (the Netherlands); three of these had food remains in the stomach. Samples were also examined from a whale stranded in August 1998 at Bettyhill (Scotland) and one live-stranded in March 1996 at Tory Island, Co. Donegal (Ireland). Finally, a sample of the stomach contents from a whale stranded near Terneuzen (Scheldt Estuary, the Netherlands) in February 1937 was also examined. All samples consisted almost entirely of cephalopod beaks. Some fish remains were also found in the stomach of the Wassenaar and one of the Ameland whales. The cephalopod prey were mainly oceanic species: Gonatus sp. (probably Gonatus fabricii, Oegopsida: Gonatidae) was the main prey for all the animals stranded in the Netherlands. The specimen stranded in Ireland had consumed a wider range of prey, mainly Histioteuthis bonnellii (Oegopsida: Histiotetuhidae), but also Architeuthis sp. (Oegopsida: Architeuthidae), Chiroteuthis sp. (Oegopsida: Chiroteuthidae), Teuthowenia megalops (Oegopsida: Cranchiidae) and the octopod Haliphron atlanticus (Incirrata: Alloposidae). The fish remains from the Wassenaar whale were saithe (Pollachius virens, Gadiformes: Gadidae), while remains of monkfish (Lophius sp., Lophiiformes: Lophiidae) and an unidentified fish were recorded from one of the Ameland animals.


Journal of Mammalogy | 2005

MATING STRATEGY IN THE MALE COMMON DOLPHIN (DELPHINUS DELPHIS): WHAT GONADAL ANALYSIS TELLS US

S. Murphy; A. Collet; Emer Rogan

Abstract Gonadal development in immature, pubertal, young mature, and sexually mature male common dolphins (Delphinus delphis) was assessed for 212 dolphins collected between 1991 and 2003. The sample consisted of animals stranded along the Irish and French coasts, and also bycatch samples from Irish and French observer programs. Through histological analysis of the testes, individuals were categorized into reproductive stages by using characteristics of their gonadal morphology. These stages were immature, pubescent, young mature, and sexually mature. Male common dolphins were 102–233 cm in length and 0–28 years of age. Sexually mature individuals were 195–233 cm in length and 8–28 years of age, and the average age at attainment of sexual maturity was 11.86 years. Combined testes weight for mature male dolphins ranged from 0.45 to 5 kg, which is relatively large considering the overall size of the dolphin. Reproductive seasonality was found to occur, as evidenced by marked seasonal changes in both testes weights and cellular activity in testes outside the mating period; the mating period was estimated to take place during May–September. Moderate sexual dimorphism and large testes suggest sperm competition and a promiscuous mating system, with female common dolphins mating with multiple mates.


Environmental Pollution | 1997

Concentrations and patterns of organic contaminants in Atlantic white-sided dolphins (Lagenorhynchus acutus) from Irish and Scottish coastal waters

Craig McKenzie; Emer Rogan; Robert J. Reid; D.E. Wells

Chlorobiphenyls (CBs) and organochlorine pesticides (OCPs) have been determined in the blubber of 17 Atlantic white-sided dolphins stranded at Killala Bay, Co Mayo, Ireland and five from the Scottish coast. The concentrations of the contaminants measured range from 773 to 63,400 microg kg(-1) for sigmaCB and from 160 to 54,600 microg kg(-1) for sigmaDDT. The concentrations of the CBs and OCPs is highly dependent on the age, sex, reproductive state and nutritional condition of the animals in addition to the intake via the food web. Principal Components Analysis (PCA) has been used to study the variation of chemical patterns (data ratioed to CB 153). Immature animals (< 6 years), mature males and primogravid females, and lactating females could be distinguished on the basis of their contaminant patterns. This paper describes the different processes of bioaccumulation and metabolism of organochlorine contaminants (OCs) in this species.

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Robert J. Reid

Scottish Agricultural College

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Vincent Ridoux

University of La Rochelle

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Simon Berrow

Galway-Mayo Institute of Technology

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T. F. Cross

University College Cork

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Simon N. Ingram

Plymouth State University

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