Erik G. Larsson

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data

The cBio Cancer Genomics Portal (http://cbioportal.org) is an open-access resource for interactive exploration of multidimensional cancer genomics data sets, currently providing access to data from more than 5,000 tumor samples from 20 cancer studies. The cBio Cancer Genomics Portal significantly lowers the barriers between complex genomic data and cancer researchers who want rapid, intuitive, and high-quality access to molecular profiles and clinical attributes from large-scale cancer genomics projects and empowers researchers to translate these rich data sets into biologic insights and clinical applications.

Scaling Up MIMO: Opportunities and Challenges with Very Large Arrays

Multiple-input multiple-output (MIMO) technology is maturing and is being incorporated into emerging wireless broadband standards like long-term evolution (LTE) [1]. For example, the LTE standard allows for up to eight antenna ports at the base station. Basically, the more antennas the transmitter/receiver is equipped with, and the more degrees of freedom that the propagation channel can provide, the better the performance in terms of data rate or link reliability. More precisely, on a quasi static channel where a code word spans across only one time and frequency coherence interval, the reliability of a point-to-point MIMO link scales according to Prob(link outage) ` SNR-ntnr where nt and nr are the numbers of transmit and receive antennas, respectively, and signal-to-noise ratio is denoted by SNR. On a channel that varies rapidly as a function of time and frequency, and where circumstances permit coding across many channel coherence intervals, the achievable rate scales as min(nt, nr) log(1 + SNR). The gains in multiuser systems are even more impressive, because such systems offer the possibility to transmit simultaneously to several users and the flexibility to select what users to schedule for reception at any given point in time [2].Presents a list of articles published by the IEEE Signal Processing Society (SPS) that ranked among the top 100 most downloaded IEEE Xplore articles.

Massive MIMO for next generation wireless systems

Multi-user MIMO offers big advantages over conventional point-to-point MIMO: it works with cheap single-antenna terminals, a rich scattering environment is not required, and resource allocation is simplified because every active terminal utilizes all of the time-frequency bins. However, multi-user MIMO, as originally envisioned, with roughly equal numbers of service antennas and terminals and frequency-division duplex operation, is not a scalable technology. Massive MIMO (also known as large-scale antenna systems, very large MIMO, hyper MIMO, full-dimension MIMO, and ARGOS) makes a clean break with current practice through the use of a large excess of service antennas over active terminals and time-division duplex operation. Extra antennas help by focusing energy into ever smaller regions of space to bring huge improvements in throughput and radiated energy efficiency. Other benefits of massive MIMO include extensive use of inexpensive low-power components, reduced latency, simplification of the MAC layer, and robustness against intentional jamming. The anticipated throughput depends on the propagation environment providing asymptotically orthogonal channels to the terminals, but so far experiments have not disclosed any limitations in this regard. While massive MIMO renders many traditional research problems irrelevant, it uncovers entirely new problems that urgently need attention: the challenge of making many low-cost low-precision components that work effectively together, acquisition and synchronization for newly joined terminals, the exploitation of extra degrees of freedom provided by the excess of service antennas, reducing internal power consumption to achieve total energy efficiency reductions, and finding new deployment scenarios. This article presents an overview of the massive MIMO concept and contemporary research on the topic.

Energy and Spectral Efficiency of Very Large Multiuser MIMO Systems

A multiplicity of autonomous terminals simultaneously transmits data streams to a compact array of antennas. The array uses imperfect channel-state information derived from transmitted pilots to extract the individual data streams. The power radiated by the terminals can be made inversely proportional to the square-root of the number of base station antennas with no reduction in performance. In contrast if perfect channel-state information were available the power could be made inversely proportional to the number of antennas. Lower capacity bounds for maximum-ratio combining (MRC), zero-forcing (ZF) and minimum mean-square error (MMSE) detection are derived. An MRC receiver normally performs worse than ZF and MMSE. However as power levels are reduced, the cross-talk introduced by the inferior maximum-ratio receiver eventually falls below the noise level and this simple receiver becomes a viable option. The tradeoff between the energy efficiency (as measured in bits/J) and spectral efficiency (as measured in bits/channel use/terminal) is quantified for a channel model that includes small-scale fading but not large-scale fading. It is shown that the use of moderately large antenna arrays can improve the spectral and energy efficiency with orders of magnitude compared to a single-antenna system.

Spectrum Sensing for Cognitive Radio : State-of-the-Art and Recent Advances

The ever-increasing demand for higher data rates in wireless communications in the face of limited or underutilized spectral resources has motivated the introduction of cognitive radio. Traditionally, licensed spectrum is allocated over relatively long time periods and is intended to be used only by licensees. Various measurements of spectrum utilization have shown substantial unused resources in frequency, time, and space [1], [2]. The concept behind cognitive radio is to exploit these underutilized spectral resources by reusing unused spectrum in an opportunistic manner [3], [4]. The phrase cognitive radio is usually attributed to Mitola [4], but the idea of using learning and sensing machines to probe the radio spectrum was envisioned several decades earlier (cf., [5]).

HRG Inhibits Tumor Growth and Metastasis by Inducing Macrophage Polarization and Vessel Normalization through Downregulation of PlGF

Polarization of tumor-associated macrophages (TAMs) to a proangiogenic/immune-suppressive (M2-like) phenotype and abnormal, hypoperfused vessels are hallmarks of malignancy, but their molecular basis and interrelationship remains enigmatic. We report that the host-produced histidine-rich glycoprotein (HRG) inhibits tumor growth and metastasis, while improving chemotherapy. By skewing TAM polarization away from the M2- to a tumor-inhibiting M1-like phenotype, HRG promotes antitumor immune responses and vessel normalization, effects known to decrease tumor growth and metastasis and to enhance chemotherapy. Skewing of TAM polarization by HRG relies substantially on downregulation of placental growth factor (PlGF). Besides unveiling an important role for TAM polarization in tumor vessel abnormalization, and its regulation by HRG/PlGF, these findings offer therapeutic opportunities for anticancer and antiangiogenic treatment.

Complete Characterization of the Pareto Boundary for the MISO Interference Channel

In this correspondence, we study the achievable rate region of the multiple-input single-output (MISO) interference channel, under the assumption that all receivers treat the interference as additive Gaussian noise. Our main result is an explicit parametrization of the Pareto boundary for an arbitrary number of users and antennas. The parametrization describes the boundary in terms of a low-dimensional manifold. For the two-user case we show that a single real-valued parameter per user is sufficient to achieve all points on the Pareto boundary and that any point on the Pareto boundary corresponds to beamforming vectors that are linear combinations of the zero-forcing (ZF) and maximum-ratio transmission (MRT) beamformers. We further specialize the results to the MISO broadcast channel (BC). A numerical example illustrates the result.

BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma

CTCF, a conserved, ubiquitous, and highly versatile 11-zinc-finger factor involved in various aspects of gene regulation, forms methylation-sensitive insulators that regulate X chromosome inactivation and expression of imprinted genes. We document here the existence of a paralogous gene with the same exons encoding the 11-zinc-finger domain as mammalian CTCF genes and thus the same DNA-binding potential, but with distinct amino and carboxy termini. We named this gene BORIS for Brother of the Regulator of Imprinted Sites. BORIS is present only in the testis, and expressed in a mutually exclusive manner with CTCF during male germ cell development. We show here that erasure of methylation marks during male germ-line development is associated with dramatic up-regulation of BORIS and down-regulation of CTCF expression. Because BORIS bears the same DNA-binding domain that CTCF employs for recognition of methylation marks in soma, BORIS is a candidate protein for the elusive epigenetic reprogramming factor acting in the male germ line.

Simultaneous Information and Power Transfer for Broadband Wireless Systems

Far-field microwave power transfer (MPT) will free wireless sensors and other mobile devices from the constraints imposed by finite battery capacities. Integrating MPT with wireless communications to support simultaneous wireless information and power transfer (SWIPT) allows the same spectrum to be used for dual purposes without compromising the quality of service. A novel approach is presented in this paper for realizing SWIPT in a broadband system where orthogonal frequency division multiplexing and transmit beamforming are deployed to create a set of parallel sub-channels for SWIPT, which simplifies resource allocation. Based on a proposed reconfigurable mobile architecture, different system configurations are considered by combining single-user/multi-user systems, downlink/uplink information transfer, and variable/fixed coding rates. Optimizing the power control for these configurations results in a new class of multi-user power-control problems featuring the circuit-power constraints, specifying that the transferred power must be sufficiently large to support the operation of the receiver circuitry. Solving these problems gives a set of power-control algorithms that exploit channel diversity in frequency for simultaneously enhancing the throughput and the MPT efficiency. For the system configurations with variable coding rates, the algorithms are variants of water-filling that account for the circuit-power constraints. The optimal algorithms for those configurations with fixed coding rates are shown to sequentially allocate mobiles their required power for decoding in ascending order until the entire budgeted power is spent. The required power for a mobile is derived as simple functions of the minimum signal-to-noise ratio for correct decoding, the circuit power and sub-channel gains.

Competition Versus Cooperation on the MISO Interference Channel

We consider the problem of coordinating two competing multiple-antenna wireless systems (operators) that operate in the same spectral band. We formulate a rate region which is achievable by scalar coding followed by power allocation and beamforming. We show that all interesting points on the Pareto boundary correspond to transmit strategies where both systems use the maximum available power. We then argue that there is a fundamental need for base station cooperation when performing spectrum sharing with multiple transmit antennas. More precisely, we show that if the systems do not cooperate, there is a unique Nash equilibrium which is inefficient in the sense that the achievable rate is bounded by a constant, regardless of the available transmit power. An extension of this result to the case where the receivers use successive interference cancellation (SIC) is also provided. Next we model the problem of agreeing on beamforming vectors as a non-transferable utility (NTU) cooperative gametheoretic problem, with the two operators as players. Specifically we compute numerically the Nash bargaining solution, which is a likely resolution of the resource conflict assuming that the players are rational. Numerical experiments indicate that selfish but cooperating operators may achieve a performance which is close to the maximum-sum-rate bound.