Esra Tatar
Marmara University
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Featured researches published by Esra Tatar.
European Journal of Medicinal Chemistry | 2013
İlkay Küçükgüzel; Gökhan Satılmış; K.R. Gurukumar; Amartya Basu; Esra Tatar; Daniel B. Nichols; Tanaji T. Talele; Neerja Kaushik-Basu
Hepatitis C virus (HCV) NS5B polymerase is an important and attractive target for the development of anti-HCV drugs. Here we report on the design, synthesis and evaluation of twenty-four novel allosteric inhibitors bearing the 4-thiazolidinone scaffold as inhibitors of HCV NS5B polymerase. Eleven compounds tested were found to inhibit HCV NS5B with IC₅₀ values ranging between 19.8 and 64.9 μM. Compound 24 was the most active of this series with an IC₅₀ of 5.6 μM. A number of these derivatives further exhibited strong inhibition against HCV 1b and 2a genotypes in cell based antiviral assays. Molecular docking analysis predicted that the thiazolidinone derivatives bind to the NS5B thumb pocket-II (TP-II). Our results suggest that further optimization of the thiazolidinone scaffold may be possible to yield new derivatives with improved enzyme- and cell-based activity.
Archiv Der Pharmazie | 2015
Gizem Çakır; İlkay Küçükgüzel; Rupa Guhamazumder; Esra Tatar; Dinesh Manvar; Amartya Basu; Bhargav A. Patel; Javairia Zia; Tanaji T. Talele; Neerja Kaushik-Basu
In continuation of our efforts to develop new derivatives as hepatitis C virus (HCV) NS5B inhibitors, we synthesized novel 5‐arylidene‐4‐thiazolidinones. The novel compounds 29–42, together with their synthetic precursors 22–28, were tested for HCV NS5B inhibitory activity; 12 of these compounds displayed IC50 values between 25.3 and 54.1 µM. Compound 33, an arylidene derivative, was found to be the most active compound in this series with an IC50 value of 25.3 µM. Molecular docking studies were performed on the thumb pocket‐II of NS5B to postulate the binding mode for these compounds.
Biological & Pharmaceutical Bulletin | 2016
Esra Tatar; Sevgi Karakuş; Şükriye Güniz Küçükgüzel; Sinem Öktem Okullu; Nihan Ünübol; Tanıl Kocagöz; Erik De Clercq; Graciela Andrei; Robert Snoeck; Christophe Pannecouque; Sadık Kalaycı; Fikrettin Şahin; Dharmarajan Sriram; Perumal Yogeeswari; İlkay Küçükgüzel
In view of the emergence and frequency of multidrug-resistant and extensively drug-resistant tuberculosis and consequences of acquired resistance to clinically used drugs, we undertook the design and synthesis of novel prototypes that possess the advantage of the two pharmacophores of thiourea and 1,3,4-thiadiazole in a single molecular backbone. Three compounds from our series were distinguished from the others by their promising activity profiles against Mycobacterium tuberculosis strain H37Rv. Compounds 11 and 19 were the most active representatives with minimum inhibitory concentration (MIC) values of 10.96 and 11.48 µM, respectively. Compound 15 was shown to inhibit M. tuberculosis strain H37Rv with an MIC value of 17.81 µM. Cytotoxicity results in the Vero cell line showed that these three derivatives had selectivity indices between 1.8 and 8.7. In order to rationalize the biological results of our compounds, molecular docking studies with the enoyl acyl carrier protein reductase (InhA) of M. tuberculosis were performed and compounds 11, 15, and 19 were found to have good docking scores in the range of -7.12 to -7.83 kcal/mol.
Archiv Der Pharmazie | 2013
Esra Tatar; İlkay Küçükgüzel; Dirk Daelemans; Tanaji T. Talele; Neerja Kaushik-Basu; Erik De Clercq; Christophe Pannecouque
In accordance with our antiviral drug development attempt, acylhydrazone derivatives bearing amino acid side chains were synthesized for the evaluation of their antiviral activity against various types of viruses. Among these compounds, 8S, 11S, and 12S showed anti‐HIV‐1 activity with a 50% inhibitory concentration (IC50) = 123.8 µM (selectivity index, SI > 3), IC50 = 12.1 µM (SI > 29), IC50 = 17.4 µM (SI > 19), respectively. Enantiomers 8R, 11R, and 12R were inactive against the HIV‐1 strain IIIB. Hydrazones 8S, 11S, and 12S which were active against HIV‐1 wild type showed no inhibition against a double mutant NNRTI‐resistant strain (K103N;Y181C). Molecular docking calculations of R‐ and S‐enantiomers of 8, 11, and 12 were performed using the hydrazone‐bound novel site of HIV‐1 RT.
European Journal of Medicinal Chemistry | 2008
İlkay Küçükgüzel; Esra Tatar; Ş. Güniz Küçükgüzel; Sevim Rollas; Erik De Clercq
European Journal of Medicinal Chemistry | 2007
Ş. Güniz Küçükgüzel; İlkay Küçükgüzel; Esra Tatar; Sevim Rollas; Fikrettin Şahin; Medine Gulluce; Erik De Clercq; Levent Kabasakal
European Journal of Medicinal Chemistry | 2016
Necla Kulabaş; Esra Tatar; Ozlem Bingol Ozakpinar; Derya Özsavcı; Christophe Pannecouque; Erik De Clercq; İlkay Küçükgüzel
Biochemical and Biophysical Research Communications | 2016
Dinesh Manvar; İlkay Küçükgüzel; Gizem Erensoy; Esra Tatar; Gökhan Deryabaşoğulları; Haarika Reddy; Tanaji T. Talele; Ozge Cevik; Neerja Kaushik-Basu
Arkivoc | 2008
Esra Tatar; İlkay Küçükgüzel; Erik De Clercq; Fikrettin Şahin; Medine Gulluce
Medicinal Chemistry Research | 2013
Pelin Çıkla; Esra Tatar; İlkay Küçükgüzel; Fikrettin Şahin; Dilsad Yurdakul; Amartya Basu; Ramalingam Krishnan; Daniel B. Nichols; Neerja Kaushik-Basu; Ş. Güniz Küçükgüzel