Evan V. Arntzen

Physicochemical Characteristics of the Hyporheic Zone Affect Redd Site Selection by Chum Salmon and Fall Chinook Salmon in the Columbia River

Abstract Chum salmon Oncorhynchus keta and fall chinook salmon O. tshawytscha spawned at separate locations in a side channel near Ives Island, Washington, in the Columbia River downstream of Bonneville Dam. We hypothesized that measurements of water depth, substrate size, and water velocity would not sufficiently explain the separation in spawning areas and began a 2-year investigation of physicochemical characteristics of the hyporheic zone. We found that chum salmon spawned in upwelling water that was significantly warmer than the surrounding river water. In contrast, fall chinook salmon constructed redds at downwelling sites, where there was no difference in temperature between the river and its bed. An understanding of the specific factors affecting chum salmon and fall chinook salmon redd site selection at Ives Island will be useful to resource managers attempting to maximize available salmonid spawning habitat within the constraints imposed by other water resource needs.

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

Environmental transitions often result in resource mixtures that overcome limitations to microbial metabolism, resulting in biogeochemical hotspots and moments. Riverine systems, where groundwater mixes with surface water (the hyporheic zone), are spatially complex and temporally dynamic, making development of predictive models challenging. Spatial and temporal variations in hyporheic zone microbial communities are a key, but understudied, component of riverine biogeochemical function. Here, to investigate the coupling among groundwater–surface water mixing, microbial communities and biogeochemistry, we apply ecological theory, aqueous biogeochemistry, DNA sequencing and ultra-high-resolution organic carbon profiling to field samples collected across times and locations representing a broad range of mixing conditions. Our results indicate that groundwater–surface water mixing in the hyporheic zone stimulates heterotrophic respiration, alters organic carbon composition, causes ecological processes to shift from stochastic to deterministic and is associated with elevated abundances of microbial taxa that may degrade a broad suite of organic compounds.

Influence of River Level on Temperature and Hydraulic Gradients in Chum and Fall Chinook Salmon Spawning Areas Downstream of Bonneville Dam, Columbia River

Abstract Chum salmon Oncorhynchus keta and fall Chinook salmon O. tshawytscha segregate spatially during spawning in the Ives Island side channel of the lower Columbia River downstream from Bonneville Dam. Previous research during one spawning season (2000) suggested that these species selected spawning habitats based on differences in hyporheic temperature and vertical hydraulic gradient (VHG). In this study we confirmed the spatial segregation of spawning based on hyporheic characteristics over 4 years (2001–2004) and examined the effects of load-following operations (power generation to meet short-term electrical demand) at Bonneville Dam on hyporheic function and characteristics. We found that during the study period hyporheic temperature and VHG in chum salmon spawning areas were highly variable during periods of load-following operation, when river levels fluctuated. In contrast, hyporheic water temperature and VHG within chum salmon spawning areas fluctuated less when river levels were not changing...

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes: Deterministic assembly of hyporheic microbiomes

Subsurface groundwater-surface water mixing zones (hyporheic zones) have enhanced biogeochemical activity, but assembly processes governing subsurface microbiomes remain a critical uncertainty in understanding hyporheic biogeochemistry. To address this obstacle, we investigated (a) biogeographical patterns in attached and waterborne microbiomes across three hydrologically-connected, physicochemically-distinct zones (inland hyporheic, nearshore hyporheic and river); (b) assembly processes that generated these patterns; (c) groups of organisms that corresponded to deterministic changes in the environment; and (d) correlations between these groups and hyporheic metabolism. All microbiomes remained dissimilar through time, but consistent presence of similar taxa suggested dispersal and/or common selective pressures among zones. Further, we demonstrated a pronounced impact of deterministic assembly in all microbiomes as well as seasonal shifts from heterotrophic to autotrophic microorganisms associated with increases in groundwater discharge. The abundance of one statistical cluster of organisms increased with active biomass and respiration, revealing organisms that may strongly influence hyporheic biogeochemistry. Based on our results, we propose a conceptualization of hyporheic zone metabolism in which increased organic carbon concentrations during surface water intrusion support heterotrophy, which succumbs to autotrophy under groundwater discharge. These results provide new opportunities to enhance microbially-explicit ecosystem models describing hyporheic zone biogeochemistry and its influence over riverine ecosystem function.

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism

Community assembly processes generate shifts in species abundances that influence ecosystem cycling of carbon and nutrients, yet our understanding of assembly remains largely separate from ecosystem-level functioning. Here, we investigate relationships between assembly and changes in microbial metabolism across space and time in hyporheic microbial communities. We pair sampling of two habitat types (i.e., attached and planktonic) through seasonal and sub-hourly hydrologic fluctuation with null modeling and temporally explicit multivariate statistics. We demonstrate that multiple selective pressures—imposed by sediment and porewater physicochemistry—integrate to generate changes in microbial community composition at distinct timescales among habitat types. These changes in composition are reflective of contrasting associations of Betaproteobacteria and Thaumarchaeota with ecological selection and with seasonal changes in microbial metabolism. We present a conceptual model based on our results in which metabolism increases when oscillating selective pressures oppose temporally stable selective pressures. Our conceptual model is pertinent to both macrobial and microbial systems experiencing multiple selective pressures and presents an avenue for assimilating community assembly processes into predictions of ecosystem-level functioning.

Influence of the Hyporheic Zone on Supersaturated Gas Exposure to Incubating Chum Salmon

Abstract Hydroelectric dam operation causes total dissolved gas (TDG) to be seasonally elevated in the lower Columbia River, as surface water concentrations approach 120%. Federally protected chum salmon Oncorhynchus keta embryos incubating in nearby spawning areas could be affected if depth-compensated TDG concentrations within the hyporheic zone exceed 103%. The objective of this study was to determine whether TDG of the hyporheic zone in two chum salmon spawning areas—one in a side channel near Ives Island, Washington, and another on the main-stem Columbia River near Multnomah Falls, Oregon—was affected by the elevated TDG of the surface water. Depth-compensated hyporheic TDG did not exceed 103% at the Multnomah Falls site. However, in the Ives Island area, chum salmon redds were exposed to TDG greater than 103% for more than 300 h. In response to river depth fluctuations, TDG varied significantly in the Ives Island area, suggesting increased interaction between the hyporheic zone and surface water at ...

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology

The hyporheic corridor (HC) encompasses the river–groundwater continuum, where the mixing of groundwater (GW) with river water (RW) in the HC can stimulate biogeochemical activity. Here we propose a novel thermodynamic mechanism underlying this phenomenon and reveal broader impacts on dissolved organic carbon (DOC) and microbial ecology. We show that thermodynamically favorable DOC accumulates in GW despite lower DOC concentration, and that RW contains thermodynamically less-favorable DOC, but at higher concentrations. This indicates that GW DOC is protected from microbial oxidation by low total energy within the DOC pool, whereas RW DOC is protected by lower thermodynamic favorability of carbon species. We propose that GW–RW mixing overcomes these protections and stimulates respiration. Mixing models coupled with geophysical and molecular analyses further reveal tipping points in spatiotemporal dynamics of DOC and indicate important hydrology–biochemistry–microbial feedbacks. Previously unrecognized thermodynamic mechanisms regulated by GW–RW mixing may therefore strongly influence biogeochemical and microbial dynamics in riverine ecosystems.The mechanisms responsible for stimulating biogeochemical activity in the hyporheic corridor (HC) are poorly understood. Here, the authors find that previously unrecognized thermodynamic mechanisms regulated by groundwater-river water mixing may strongly influence HC biogeochemical and microbial dynamics.

Colonization habitat controls biomass, composition, and metabolic activity of attached microbial communities in the Columbia River hyporheic corridor

ABSTRACT Hydrologic exchange plays a critical role in biogeochemical cycling within the hyporheic zone (the interface between river water and groundwater) of riverine ecosystems. Such exchange may set limits on the rates of microbial metabolism and impose deterministic selection on microbial communities that adapt to dynamically changing dissolved organic carbon (DOC) sources. This study examined the response of attached microbial communities (in situ colonized sand packs) from groundwater, hyporheic, and riverbed habitats within the Columbia River hyporheic corridor to “cross-feeding” with either groundwater, river water, or DOC-free artificial fluids. Our working hypothesis was that deterministic selection during in situ colonization would dictate the response to cross-feeding, with communities displaying maximal biomass and respiration when supplied with their native fluid source. In contrast to expectations, the major observation was that the riverbed colonized sand had much higher biomass and respiratory activity, as well as a distinct community structure, compared with those of the hyporheic and groundwater colonized sands. 16S rRNA gene amplicon sequencing revealed a much higher proportion of certain heterotrophic taxa as well as significant numbers of eukaryotic algal chloroplasts in the riverbed colonized sand. Significant quantities of DOC were released from riverbed sediment and colonized sand, and separate experiments showed that the released DOC stimulated respiration in the groundwater and piezometer colonized sand. These results suggest that the accumulation and degradation of labile particulate organic carbon (POC) within the riverbed are likely to release DOC, which may enter the hyporheic corridor during hydrologic exchange, thereby stimulating microbial activity and imposing deterministic selective pressure on the microbial community composition. IMPORTANCE The influence of river water-groundwater mixing on hyporheic zone microbial community structure and function is an important but poorly understood component of riverine biogeochemistry. This study employed an experimental approach to gain insight into how such mixing might be expected to influence the biomass, respiration, and composition of hyporheic zone microbial communities. Colonized sands from three different habitats (groundwater, river water, and hyporheic) were “cross-fed” with either groundwater, river water, or DOC-free artificial fluids. We expected that the colonization history would dictate the response to cross-feeding, with communities displaying maximal biomass and respiration when supplied with their native fluid source. By contrast, the major observation was that the riverbed communities had much higher biomass and respiration, as well as a distinct community structure compared with those of the hyporheic and groundwater colonized sands. These results highlight the importance of riverbed microbial metabolism in organic carbon processing in hyporheic corridors.

Carbon Inputs From Riparian Vegetation Limit Oxidation of Physically Bound Organic Carbon Via Biochemical and Thermodynamic Processes

1 In light of increasing terrestrial carbon (C) transport across aquatic boundaries, the 2 mechanisms governing organic carbon (OC) oxidation along terrestrial-aquatic interfaces are 3 crucial to future climate predictions. Here, we investigate the biochemistry, metabolic pathways, 4 and thermodynamics corresponding to OC oxidation in the Columbia River corridor using ultra5 high resolution C characterization. We leverage natural vegetative differences to encompass 6 variation in terrestrial C inputs. Our results suggest that decreases in terrestrial C deposition 7 associated with diminished riparian vegetation induce oxidation of physically -bound OC. We 8 also find that contrasting metabolic pathways oxidize OC in the presence and absence of 9 vegetation and—in direct conflict with the ‘priming’ concept—that inputs of water-soluble and 10 thermodynamically favorable terrestrial OC protects bound-OC from oxidation. In both 11 environments, the most thermodynamically favorable compounds appear to be preferentially 12 oxidized regardless of which OC pool microbiomes metabolize. In turn, we suggest that the 13 extent of riparian vegetation causes sediment microbiomes to locally adapt to oxidize a particular 14 pool of OC, but that common thermodynamic principles govern the oxidation of each pool (i.e., 15 water-soluble or physically-bound). Finally, we propose a mechanistic conceptualization of OC 16 oxidation along terrestrial-aquatic interfaces that can be used to model heterogeneous patterns of 17 OC loss under changing land cover distributions. 18 19 20 21 . CC-BY-NC-ND 4.0 International license peer-reviewed) is the author/funder. It is made available under a The copyright holder for this preprint (which was not . http://dx.doi.org/10.1101/105486 doi: bioRxiv preprint first posted online Feb. 2, 2017;

Methods for Assessing the Relative Amounts of Groundwater Discharge into the Columbia River and Measurement of Columbia River Gradients at the Hanford Site’s 300 Area

This report summarizes FY08 activities conducted under the Remediation and Closure Sciences Project.