F. Betül Kaynak

Synthesis and antioxidant properties of novel N-methyl-1,3,4-thiadiazol-2-amine and 4-methyl-2H-1,2,4-triazole-3(4H)-thione derivatives of benzimidazole class

Some novel 1-methyl-4-(2-(2-substitutedphenyl-1H-benzimidazol-1-yl)acetyl)thiosemicarbazides (16a-20a), 5-[(2-(substitutedphenyl)-1H-benzimidazol-1-yl)methyl]-N-methyl-1,3,4-thiadiazol-2-amines (17b-20b), and 5-[(2-(substitutedphenyl)-1H-benzimidazol-1-yl)methyl-4-methyl-2H-1,2,4-triazole-3(4H)-thiones (16c-20c) were synthesized and tested for antioxidant properties by using various in vitro systems. Compounds 16a-20a were found to be a good scavenger of DPPH radical (IC(50), 26 microM; IC(50), 30 microM; IC(50), 43 microM; IC(50), 55 microM; IC(50), 74 microM, respectively) when compared to BHT (IC(50), 54 microM). Noteworthy results could not be found on superoxide radical. Compound 19b, which is the most active derivative inhibited slightly lipid peroxidation (28%) at 10(-3)M concentration. Compound 17c inhibited the microsomal ethoxyresorufin O-deethylase (EROD) activity with an IC(50)=4.5 x 10(-4)M which is similarly better than the specific inhibitor caffeine IC(50)=5.2 x 10(-4)M.

Synthesis of 3,6-disubstituted 7H-1,2,4-triazolo[3,4-b]-1,3,4-thiadiazines as novel analgesic/anti-inflammatory compounds

In this study, a new class of 4-amino-3-substituted-1,2,4-triazole-5-thiones (1-4) and their corresponding condensed derivatives 3,6-disubstituted 7H-1,2,4-triazolo[3,4-b]-1,3,4-thiadiazines (1a-4c) were synthesized and evaluated for their analgesic/anti-inflammatory activities. All synthesized compounds were also tested for their gastric toxicity and antioxidant activity on acute administration. Most of the compounds showed significant activity in both carrageenan-induced oedema and acetic acid-induced writhing tests besides negligible gastrointestinal toxicity. The compounds showing less ulcerogenic effect also showed less lipid peroxidation (LPO) level. Most promising results were obtained with the compounds that placed a fluoro or a chloride on the phenyl ring at the sixth position of the fused ring.

Synthesis of R-(-)-2-ethyl-N-benzyl (benzo-monoaza-15-crown-5) and the Crystal Structure of Its Sodium Perchlorate Complex

A new complex of a chiral monoaza-crown ether, [R-(-)-2-ethyl-N-benzyl-4,7,10,13-tetraoxa-1-azacyclopentadeceane) NaClO4], has been prepared and studied by x-ray diffraction. The compound crystallizes in space group P21 with cell dimensions a = 9.480(1), b = 15.978(2), c = 15.816(2) Å, β = 105.51(1)°, Z = 4. The final R value is 0.055 for 2711 observed reflections and 540 parameters. There are twomolecules in the asymmetric unit labelled A and B. The sodium ion is hexacoordinated. The average values for the Na–-Oeth (etheric) distances are 2.364(6), 2.317(7) Å and the Na–N distances are 2.679(6), 2.611(7) Å; the Na–-O(ClO4) contacts are2.497(7) and 2.257(10) Å, for A and B, respectively.

New (arylalkyl)azole derivatives showing anticonvulsant effects could have VGSC and/or GABAAR affinity according to molecular modeling studies.

(Arylalkyl)azoles (AAAs) emerged as a novel class of antiepileptic agents with the invention of nafimidone and denzimol. Several AAA derivatives with potent anticonvulsant activities have been reported so far, however neurotoxicity was usually an issue. We prepared a set of ester derivatives of 1-(2-naphthyl)-2-(1H-1,2,4-triazol-1-yl)ethanone oxime and evaluated their anticonvulsant and neurotoxic effects in mice. Most of our compounds were protective against maximal electroshock (MES)- and/or subcutaneous metrazol (s.c. MET)-induced seizures whereas none of them showed neurotoxicity. Nafimidone and denzimol have an activity profile similar to that of phenytoin or carbamazepine, both of which are known to inhibit voltage-gated sodium channels (VGSCs) as well as to enhance γ-aminobutiric acid (GABA)-mediated response. In order to get insights into the effects of our compounds on VGSCs and A-type GABA receptors (GABAARs) we performed docking studies using homology model of Na+ channel inner pore and GABAAR as docking scaffolds. We found that our compounds bind VGSCs in similar ways as phenytoin, carbamazepine, and lamotrigine. They showed strong affinity to benzodiazepine (BZD) binding site and their binding interactions were mainly complied with the experimental data and the reported BZD binding model.

3,4-Bis[(4-methoxy­benzo­yl)methyl­sulfanyl]thio­phene

A new type of thiophene derivative having alpha-thioketone groups at the 3- and 4-positions, viz. the title compound, C22H20O4S3, has been prepared and studied by NMR spectroscopy and single-crystal X-ray diffraction techniques. The molecule is nearly planar, the dihedral angles between the essentially planar thiophene and benzene rings being 9.4 (1) and 10.6 (1) degrees. One of the thioketone O atoms is involved in an intermolecular C-H...O hydrogen-bonding interaction.

Synthesis and anticonvulsant screening of 1,2,4-triazole derivatives

BACKGROUND Currently available antiepileptic drugs offer limited symptomatic treatment and fail to cure more than 30% of the epileptic seizures. (Arylalkyl)azoles are a class of anticonvulsants including nafimidone and loreclezole. Here, we report the design and synthesis of new (arylalkyl)azoles in N-[1-(4-chlorophenyl)-2-(1H-1,2,4-triazol-1-yl)ethylidene]hydroxylamine ester structure, their anticonvulsant screening and in silico prediction studies of their pharmacokinetic properties. METHODS The title compounds were synthesized according to the Steglich esterification of N-[1-(4-chlorophenyl)-2-(1H-1,2,4-triazol-1-yl)ethylidene]hydroxylamine with various carboxylic acids. Anticonvulsant identification and quantification tests were performed in mice by the Epilepsy Therapy Screening Program (ETSP) of the National Institutes of Health (NIH) using 6Hz psychomotor, maximal electroshock (MES), and rotorod tests. Their physicochemical and pharmacokinetic properties were calculated using QikProp. RESULTS Most of the compounds showed protection against 6Hz- and/or MES-induced seizures. 4a, 4b, and 4g were active at 100mg/kg, 4g was active in both tests without neurotoxicity. According to the QikProp calculations the title compounds were druglike and had some favourable properties such as high membrane permeability and oral absorptivity. CONCLUSION Anticonvulsant screening of a set N-[1-(4-chlorophenyl)-2-(1H-1,2,4-triazol-1-yl)ethylidene]hydroxylamine esters yielded some active derivatives in 6Hz and MES test. Especially, 4g emerged as a promising compound with activity at 100mg/kg and no toxicity. The compounds were predicted to be drug like and have good pharmacokinetic properties except hERG inhibition, which needs to be addressed in further optimization studies.

The intramolecular hydrogen bond analysis in biologically active 5-fluoro-1H-indole-2,3-dione-3-thiosemicarbazones derivatives by experimental and theoretical methods

There are several reports on the anticancer, antiviral and antibacterial activities of isatin-3-thiosemicarbazone derivatives (1-5). Investigations regarding the structure-activity relationships of 2-indolinones revealed that 5-halojenation and 3-thiosemicarbazone formations were efficient in increasing activity against a range of human cancer cells and various bacteria and viruses (3-8). In the light of these findings, 5-fluoro-1H-indole-2,3-dione 3-thiosemicarbazone derivatives were synthesized by reaction of N-substituted thiosemicarbazids with 5-fluoro-1H-indole-2,3-dione and evaluated for in vitro antituberculosis activity against Mycobacterium tuberculosis H37Rv.Their structures were confirmed by the spectral data elemental analysis and three of them were analysed by X-ray diffraction method. Due to playing a central role in the molecular structure and interactions of biologically molecules, the intramolecular hydrogen bonds (IHBs) were also calculated at the DFT level. Natural bond orbitals (NBO) calculations were used to examine the electronic characteristics of the intra-molecular hydrogen bonds . Experimental X-ray and NMR data were correlated with theoretical results. NBO energies show that the main contributions to energy stabilization correspond to LP → σ* interactions for IHBs, O1⋅⋅⋅N3–H3 and N2⋅⋅⋅N4–H4; the delocalization LP → π* for N3–N2=C2 and N3–C9=S1.

5,6-Diphenylthieno[2,3-d][1,3]-dithiole-2-thione

The title compound, C(17)H(10)S(4), has two independent molecules in the asymmetric unit. In both molecules, the fused heterocycle is almost planar and the phenyl groups make dihedral angles of 42.88 (9) and 52.79 (8) degrees with the fused heterocycle in one molecule, and angles of 40.62 (9) and 52.28 (8) degrees in the other. The crystal packing is governed by short intermolecular S.S interactions, the shortest contact being 3.333 (1) A.

5-Benzyl-5-phenyl[1,3]dithiolo[4,5-d]-[1,3]dithiole-2-thione.

In the title compound, C(17)H(12)S(5), the dithiole ring bearing the aryl substituents assumes an envelope conformation with the maximum deviation from planarity being -0.053 A. The phenyl and benzyl rings are twisted by 33.0 (1) and 31.1 (1) degrees, respectively, out of the dithiole plane. The crystal packing is governed by short S...S interactions, with the shortest being 3.550 (2) A.