Fabien Kenig

Diagenetic and catagenetic products of isorenieratene: Molecular indicators for photic zone anoxia

Abstract A wide range of novel diagenetic and catagenetic products of the diaromatic carotenoid isorenieratene, a pigment of the photosynthetic green sulphur bacteria Chlorobiaceae, has been identified in a number of sedimentary rocks ranging from Ordovician to Miocene. Compound identification is based on NMR, mass spectrometry, the presence of atropisomers, and stable carbon isotopes. Atropisomers contain an axially chiral centre which, in combination with other chiral centres, results in two or more diastereomers that can be separated on a normal GC column. Chlorobiaceae use the reverse TCA cycle to fix carbon, so that their biomass is enriched in 13C. High 13C contents of isorenieratene derivatives therefore support their inferred origins. Isorenieratene derivatives include C 40, C 33, and C 32, diaryl isoprenoids and short-chain aryl isoprenoids with additional aromatic and/or S-containing rings. C 33 and C 32 compounds are diagenetic products of C 33 and C 32 “carotenoids” formed from isorenieratene during early diagenesis through expulsion of toluene and m-xylene, respectively. Cyclisation of the polyene acyclic isoprenoid chain can proceed via an intramolecular Diels-Alder reaction, followed by aromatisation of the newly formed ring. Sulphurisation is also an important process during early diagenesis, competing with expulsion and cyclisation. Sulphur-bound isorenieratane is released during progressive diagenesis, due to cleavage of relatively weak S S and C S bonds. Cleavage of C-C bonds during aromatisation of newly formed rings and during catagenesis yields short-chain compounds. The inherent presence of a conjugated double bond system in carotenoids implies that similar diagenetic and catagenetic reactions can occur with all carotenoids. Chlorobiaceae live at or below the oxic/anoxic boundary layer and require both light and H 2S. The presence of isorenieratene or its diagenetic and catagenetic products in ancient sedimentary rocks and crude oils is therefore an excellent indication for photic zone anoxia in the depositional environment. Diagenetic and catagenetic products of isorenieratene are expected to find applications in reconstruction of palaeoenvironments and in oil-oil and oil-source rock correlation studies. Their presence in several petroleum source rocks suggests that anoxia is an important environmental parameter for the preservation of organic matter.

Does growth rate affect ketone unsaturation and intracellular carbon isotopic variability in Emiliania huxleyi

We present the first results of U37K′ and ealkenone from Emiliania huxleyi grown in chemostat cultures at constant temperature but at variable growth rates. A small change in U37K′ with growth rate was found for a noncalcifying strain of E. huxleyi, whereas results from a calcifying strain showed no systematic variation between U37K′ and growth rate. We conclude that nutrient-limited growth rate effects will not produce serious errors in paleotemperature determinations using U37K′ or U37K′. However, U37K′ values for the two strains differed significantly and apparent temperatures calculated using unsaturation ratios obtained from chemostat experiments are very different from those derived from batch culture experiments. Results of isotopic analyses of alkenones and bulk cells indicate no effect of growth rate on ealkenone (ealkenone=4.2±0.2‰). Constancy of ealkenone values is a requirement for environmental and paleoenvironmental interpretations. These results indicate that isotopic analyses of alkenones are ideal markers for paleo-[CO2(aq)] determinations.

Controls on the carbon isotopic composition of southern ocean phytoplankton

Carbon isotopic compositions of suspended organic matter and biomarker compounds were determined for 59 samples filtered from Southern Ocean surface waters in January 1994 along two north-south transects (WOCE SR3 from Tasmania to Antarctica, and across the Princess Elizabeth Trough (PET) east of Prydz Bay, Antarctica). Along the SR3 line, bulk organic matter show generally decreasing 13C contents southward, which are well correlated with increasing dissolved molecular carbon dioxide concentrations, CO2(aq). This relationship does not hold along the PET transect. Using concentrations and isotopic compositions of molecular compounds, we evaluate the relative roles of several factors affecting the δ13C of Southern Ocean suspended particulate organic matter. Along the WOCE SR3 transect, the concentration of CO2(aq) plays an important role. It is well described by a supply versus demand model for the extent of cellular CO2 utilization and its associated linear dependence of isotopic fractionation (EP) on the reciprocal of CO2(aq). An equally important factor appears to be changes in algal assemblages along the SR3 transect, with their contribution to isotopic fractionation also well described by the supply and demand model, when formulated to include the cell surface/volume control of supply. Changes in microalgal growth rates appear to have a minor effect on EP. Along the PET transect, algal assemblage changes and possibly changes in microalgal growth rates appear to strongly affect the carbon isotopic variations of suspended organic matter. These results can be used to improve the formulation of modern carbon cycle models that include phytoplankton carbon isotopic fractionation.

Molecular indicators for palaeoenvironmental change in a Messinian evaporitic sequence (Vena del Gesso, Italy). II: High-resolution variations in abundances and 13C contents of free and sulphur-bound carbon skeletons in a single marl bed.

The extractable organic matter of 10 immature samples from a marl bed of one evaporitic cycle of the Vena del Gesso sediments (Gessoso-solfifera Fm., Messinian, Italy) was analyzed quantitatively for free hydrocarbons and organic sulphur compounds. Nickel boride was used as a desulphurizing agent to recover sulphur-bound lipids from the polar and asphaltene fractions. Carbon isotopic compositions (delta vs PDB) of free hydrocarbons and of S-bound hydrocarbons were also measured. Relationships between these carbon skeletons, precursor biolipids, and the organisms producing them could then be examined. Concentrations of S-bound lipids and free hydrocarbons and their delta values were plotted vs depth in the marl bed and the profiles were interpreted in terms of variations in source organisms, 13 C contents of the carbon source, and environmentally induced changes in isotopic fractionation. The overall range of delta values measured was 24.7%, from -11.6% for a component derived from green sulphur bacteria (Chlorobiaceae) to -36.3% for a lipid derived from purple sulphur bacteria (Chromatiaceae). Deconvolution of mixtures of components deriving from multiple sources (green and purple sulphur bacteria, coccolithophorids, microalgae and higher plants) was sometimes possible because both quantitative and isotopic data were available and because either the free or S-bound pool sometimes appeared to contain material from a single source. Several free n-alkanes and S-bound lipids appeared to be specific products of upper-water-column primary producers (i.e. algae and cyanobacteria). Others derived from anaerobic photoautotrophs and from heterotrophic protozoa (ciliates), which apparently fed partly on Chlorobiaceae. Four groups of n-alkanes produced by algae or cyanobacteria were also recognized based on systematic variations of abundance and isotopic composition with depth. For hydrocarbons probably derived from microalgae, isotopic variations are well correlated with those of total organic carbon. A resistant aliphatic biomacromolecule produced by microalgae is, therefore, probably an important component of the kerogen. These variations reflect changes in the depositional environment and early diagenetic transformations. Changes in the concentrations of S-bound lipids induced by variations in conditions favourable for sulphurization were discriminated from those related to variations in primary producer assemblages. The water column of the lagoonal basin was stratified and photic zone anoxia occurred during the early and middle stages of marl deposition. During the last stage of the marl deposition the stratification collapsed due to a significant shallowing of the water column. Contributions from anaerobic photoautotrophs were apparently associated with variations in depth of the chemocline.

Microbial life at −13 °C in the brine of an ice-sealed Antarctic lake

The permanent ice cover of Lake Vida (Antarctica) encapsulates an extreme cryogenic brine ecosystem (−13 °C; salinity, 200). This aphotic ecosystem is anoxic and consists of a slightly acidic (pH 6.2) sodium chloride-dominated brine. Expeditions in 2005 and 2010 were conducted to investigate the biogeochemistry of Lake Vida’s brine system. A phylogenetically diverse and metabolically active Bacteria dominated microbial assemblage was observed in the brine. These bacteria live under very high levels of reduced metals, ammonia, molecular hydrogen (H2), and dissolved organic carbon, as well as high concentrations of oxidized species of nitrogen (i.e., supersaturated nitrous oxide and ∼1 mmol⋅L−1 nitrate) and sulfur (as sulfate). The existence of this system, with active biota, and a suite of reduced as well as oxidized compounds, is unusual given the millennial scale of its isolation from external sources of energy. The geochemistry of the brine suggests that abiotic brine-rock reactions may occur in this system and that the rich sources of dissolved electron acceptors prevent sulfate reduction and methanogenesis from being energetically favorable. The discovery of this ecosystem and the in situ biotic and abiotic processes occurring at low temperature provides a tractable system to study habitability of isolated terrestrial cryoenvironments (e.g., permafrost cryopegs and subglacial ecosystems), and is a potential analog for habitats on other icy worlds where water-rock reactions may cooccur with saline deposits and subsurface oceans.

Intermittent euxinia: Reconciliation of a Jurassic black shale with its biofacies

Isorenieratane is ubiquitous in the organic, carbon-rich Peterborough Member (Callovian, UK) of the Oxford Clay Formation, indicating a temporal overlap of the euphotic and sulphidic zone in the water column.

Molecular evidence of Late Archean archaea and the presence of a subsurface hydrothermal biosphere.

Highly cracked and isomerized archaeal lipids and bacterial lipids, structurally changed by thermal stress, are present in solvent extracts of 2,707- to 2,685-million-year-old (Ma) metasedimentary rocks from Timmins, ON, Canada. These lipids appear in conventional gas chromatograms as unresolved complex mixtures and include cyclic and acyclic biphytanes, C36–C39 derivatives of the biphytanes, and C31–C35 extended hopanes. Biphytane and extended hopanes are also found in high-pressure catalytic hydrogenation products released from solvent-extracted sediments, indicating that archaea and bacteria were present in Late Archean sedimentary environments. Postdepositional, hydrothermal gold mineralization and graphite precipitation occurred before metamorphism (≈2,665 Ma). Late Archean metamorphism significantly reduced the kerogens adsorptive capacity and severely restricted sediment porosity, limiting the potential for post-Archean additions of organic matter to the samples. Argillites exposed to hydrothermal gold mineralization have disproportionately high concentrations of extractable archaeal and bacterial lipids relative to what is releasable from their respective high-pressure catalytic hydrogenation product and what is observed for argillites deposited away from these hydrothermal settings. The addition of these lipids to the sediments likely results from a Late Archean subsurface hydrothermal biosphere of archaea and bacteria.

Molecular indicators for palaeoenvironmental change in a Messinian evaporitic sequence (Vena del Gesso, Italy). I: Variations in extractable organic matter of ten cyclically deposited marl beds☆

Abstract A ‘screening’ by direct desulphurization of extracts was employed for 21 immature, organic sulphur-rich marl samples from 10 of the 14 evaporite cycles in an Italian Messinian evaporitic basin (Vena del Gesso, Gessoso-solfifera Fm.). The combined information retrieved from free and sulphur-bound carbon skeletons enabled a detailed palaeoenvironmental reconstruction. The biomarker compositions of the marls point to large variations in the composition of species in the water column (e.g. dinoflagellates, diatoms and other algae, cyanobacteria, methanogens, green sulphur bacteria and bacterivorous ciliates) and in contributions from the continent (i.e. land plants) within each marl bed and between marl beds. The marl beds were deposited within a stratified lagoon where anoxic conditions extended into the photic zone for much of the time.

Molecular signature of chitin-protein complex in Paleozoic arthropods

The conventional geochemical view holds that the chitin and structural protein are not preserved in ancient fossils because they are readily degradable through microbial chitinolysis and proteolysis. Here we show a molecular signature of a relict chitin-protein complex preserved in a Pennsylvanian (310 Ma) scorpion cuticle and a Silurian (417 Ma) eurypterid cuticle via analysis with carbon, nitrogen, and oxygen X-ray absorption near edge structure (XANES) spectromicroscopy. High-resolution X-ray microscopy reveals the complex laminar variation in major biomolecule concentration across modern cuticle; XANES spectra highlight the presence of the characteristic functional groups of the chitin-protein complex. Modification of this complex is evident via changes in organic functional groups. Both fossil cuticles contain considerable aliphatic carbon relative to modern cuticle. However, the concentration of vestigial chitin-protein complex is high, 59% and 53% in the fossil scorpion and eurypterid, respectively. Preservation of a high-nitrogen-content chitin-protein residue in organic arthropod cuticle likely depends on condensation of cuticle-derived fatty acids onto a structurally modified chitin-protein molecular scaffold, thus preserving the remnant chitin-protein complex and cuticle from degradation by microorganisms.

Branched aliphatic alkanes with quaternary substituted carbon atoms in modern and ancient geologic samples

A pseudohomologous series of branched aliphatic alkanes with a quaternary substituted carbon atom (BAQCs, specifically 2,2-dimethylalkanes and 3,3- and 5,5-diethylalkanes) were identified in warm (65°C) deep-sea hydrothermal waters and Late Cretaceous black shales. 5,5-Diethylalkanes were also observed in modern and Holocene marine shelf sediments and in shales spanning the last 800 million years of the geological record. The carbon number distribution of BAQCs indicates a biological origin. These compounds were observed but not identified in previous studies of 2.0 billion- to 2.2 billion-year-old metasediments and were commonly misidentified in other sediment samples, indicating that BAQCs are widespread in the geological record. The source organisms of BAQCs are unknown, but their paleobiogeographic distribution suggests that they have an affinity for sulfides and might be nonphotosynthetic sulfide oxidizers.