Fabio Fiorentino

Outlier SNP markers reveal fine-scale genetic structuring across European hake populations (Merluccius merluccius)

Shallow population structure is generally reported for most marine fish and explained as a consequence of high dispersal, connectivity and large population size. Targeted gene analyses and more recently genome‐wide studies have challenged such view, suggesting that adaptive divergence might occur even when neutral markers provide genetic homogeneity across populations. Here, 381 SNPs located in transcribed regions were used to assess large‐ and fine‐scale population structure in the European hake (Merluccius merluccius), a widely distributed demersal species of high priority for the European fishery. Analysis of 850 individuals from 19 locations across the entire distribution range showed evidence for several outlier loci, with significantly higher resolving power. While 299 putatively neutral SNPs confirmed the genetic break between basins (FCT = 0.016) and weak differentiation within basins, outlier loci revealed a dramatic divergence between Atlantic and Mediterranean populations (FCT range 0.275–0.705) and fine‐scale significant population structure. Outlier loci separated North Sea and Northern Portugal populations from all other Atlantic samples and revealed a strong differentiation among Western, Central and Eastern Mediterranean geographical samples. Significant correlation of allele frequencies at outlier loci with seawater surface temperature and salinity supported the hypothesis that populations might be adapted to local conditions. Such evidence highlights the importance of integrating information from neutral and adaptive evolutionary patterns towards a better assessment of genetic diversity. Accordingly, the generated outlier SNP data could be used for tackling illegal practices in hake fishing and commercialization as well as to develop explicit spatial models for defining management units and stock boundaries.

The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries

The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem approach to fisheries management and with the requirements of the Marine Strategy Framework Directive to maintain or achieve seafloor integrity and good environmental status.

SMART: a spatially explicit bio-economic model for assessing and managing demersal fisheries, with an application to italian trawlers in the strait of sicily.

Management of catches, effort and exploitation pattern are considered the most effective measures to control fishing mortality and ultimately ensure productivity and sustainability of fisheries. Despite the growing concerns about the spatial dimension of fisheries, the distribution of resources and fishing effort in space is seldom considered in assessment and management processes. Here we propose SMART (Spatial MAnagement of demersal Resources for Trawl fisheries), a tool for assessing bio-economic feedback in different management scenarios. SMART combines information from different tasks gathered within the European Data Collection Framework on fisheries and is composed of: 1) spatial models of fishing effort, environmental characteristics and distribution of demersal resources; 2) an Artificial Neural Network which captures the relationships among these aspects in a spatially explicit way and uses them to predict resources abundances; 3) a deterministic module which analyzes the size structure of catches and the associated revenues, according to different spatially-based management scenarios. SMART is applied to demersal fishery in the Strait of Sicily, one of the most productive fisheries of the Mediterranean Sea. Three of the main target species are used as proxies for the whole range exploited by trawlers. After training, SMART is used to evaluate different management scenarios, including spatial closures, using a simulation approach that mimics the recent exploitation patterns. Results evidence good model performance, with a noteworthy coherence and reliability of outputs for the different components. Among others, the main finding is that a partial improvement in resource conditions can be achieved by means of nursery closures, even if the overall fishing effort in the area remains stable. Accordingly, a series of strategically designed areas of trawling closures could significantly improve the resource conditions of demersal fisheries in the Strait of Sicily, also supporting sustainable economic returns for fishermen if not applied simultaneously for different species.

Improving the Conservation of Mediterranean Chondrichthyans: The ELASMOMED DNA Barcode Reference Library

Cartilaginous fish are particularly vulnerable to anthropogenic stressors and environmental change because of their K-selected reproductive strategy. Accurate data from scientific surveys and landings are essential to assess conservation status and to develop robust protection and management plans. Currently available data are often incomplete or incorrect as a result of inaccurate species identifications, due to a high level of morphological stasis, especially among closely related taxa. Moreover, several diagnostic characters clearly visible in adult specimens are less evident in juveniles. Here we present results generated by the ELASMOMED Consortium, a regional network aiming to sample and DNA-barcode the Mediterranean Chondrichthyans with the ultimate goal to provide a comprehensive DNA barcode reference library. This library will support and improve the molecular taxonomy of this group and the effectiveness of management and conservation measures. We successfully barcoded 882 individuals belonging to 42 species (17 sharks, 24 batoids and one chimaera), including four endemic and several threatened ones. Morphological misidentifications were found across most orders, further confirming the need for a comprehensive DNA barcoding library as a valuable tool for the reliable identification of specimens in support of taxonomist who are reviewing current identification keys. Despite low intraspecific variation among their barcode sequences and reduced samples size, five species showed preliminary evidence of phylogeographic structure. Overall, the ELASMOMED initiative further emphasizes the key role accurate DNA barcoding libraries play in establishing reliable diagnostic species specific features in otherwise taxonomically problematic groups for biodiversity management and conservation actions.

Predictive habitat suitability models to aid conservation of elasmobranch diversity in the central Mediterranean Sea.

Commercial fisheries have dramatically impacted elasmobranch populations worldwide. With high capture and bycatch rates, the abundance of many species is rapidly declining and around a quarter of the world’s sharks and rays are threatened with extinction. At a regional scale this negative trend has also been evidenced in the central Mediterranean Sea, where bottom-trawl fisheries have affected the biomass of certain rays (e.g. Raja clavata) and sharks (e.g. Mustelus spp.). Detailed knowledge of elasmobranch habitat requirements is essential for biodiversity conservation and fisheries management, but this is often hampered by a poor understanding of their spatial ecology. Habitat suitability models were used to investigate the habitat preference of nine elasmobranch species and their overall diversity (number of species) in relation to five environmental predictors (i.e. depth, sea surface temperature, surface salinity, slope and rugosity) in the central Mediterranean Sea. Results showed that depth, seafloor morphology and sea surface temperature were the main drivers for elasmobranch habitat suitability. Predictive distribution maps revealed different species-specific patterns of suitable habitat while high assemblage diversity was predicted in deeper offshore waters (400–800 m depth). This study helps to identify priority conservation areas and diversity hot-spots for rare and endangered elasmobranchs in the Mediterranean Sea.

Stability of spatial pattern of fish species diversity in the Strait of Sicily (central Mediterranean)

In this paper, species diversity of demersal fish communities was analysed over an area covering about 45,000 km2 of the Italian side of the Strait of Sicily (central Mediterranean). Fish abundance data come from a 10-year series (1994–2003) of experimental bottom trawl surveys carried out within the framework of the international program MEDITS. A simple GIS-based method was proposed to identify areas supporting high or low values of diversity and evaluate their temporal stability. A well-defined spatio-temporal pattern in diversity emerged from the analysis, with some areas of great ecological relevance being identified. Importantly, the greatest diversity within the fish communities was consistently seen at the offshore bank on the western part of the south Sicilian shelf (Adventure Bank). The site also supports high total biomass of demersal resources and shows the presence of species of great concern to fisheries. Results suggest that Adventure Bank represents a priority site for investigating the possibility of innovative management of marine ecosystems and demersal fisheries in offshore zones.

Species distribution models of two critically endangered deep-sea octocorals reveal fishing impacts on vulnerable marine ecosystems in central Mediterranean Sea

Deep-sea coral assemblages are key components of marine ecosystems that generate habitats for fish and invertebrate communities and act as marine biodiversity hot spots. Because of their life history traits, deep-sea corals are highly vulnerable to human impacts such as fishing. They are an indicator of vulnerable marine ecosystems (VMEs), therefore their conservation is essential to preserve marine biodiversity. In the Mediterranean Sea deep-sea coral habitats are associated with commercially important crustaceans, consequently their abundance has dramatically declined due to the effects of trawling. Marine spatial planning is required to ensure that the conservation of these habitats is achieved. Species distribution models were used to investigate the distribution of two critically endangered octocorals (Funiculina quadrangularis and Isidella elongata) in the central Mediterranean as a function of environmental and fisheries variables. Results show that both species exhibit species-specific habitat preferences and spatial patterns in response to environmental variables, but the impact of trawling on their distribution differed. In particular F. quadrangularis can overlap with fishing activities, whereas I. elongata occurs exclusively where fishing is low or absent. This study represents the first attempt to identify key areas for the protection of soft and compact mud VMEs in the central Mediterranean Sea.

Twenty-five-year longevity of European hake (Merluccius merluccius) from novel use of bomb radiocarbon dating in the Mediterranean Sea

The high variability of growth and longevity estimates for European hake (Merluccius merluccius) reflects the existence of two opposing hypotheses on growth rates that differ by a factor of 2: (1) a fast-growing hypothesis (FGH) with a maximum age near 15 years; and (2) a slow-growing hypothesis (SGH) with a maximum age near 30 years. A recently established regional radiocarbon (14C) reference led to a first-time application of bomb 14C dating in the Mediterranean Sea to three of the largest-sized and potentially oldest-catch female European hake. Because age reading of otoliths is very subjective and poorly defined, these fish were aged blind with bomb radiocarbon (14C) dating as an independent estimate of validated age. The validated ages were compared with the theoretical maximum ages from the most reliable FGH and SGH von Bertalanffy growth functions. Among the three bomb 14C ages, the most diagnostic length-at-age was an alignment with the bomb 14C rise period for two of the three fish, providing validated ages of 22 years (74.5-cm total length) and 25 years (88-cm total length). The results provide estimates of length-at-age that are in agreement with the SGH and cannot be accounted for by the FGH.

Erratum to: Biomass HotSpot distribution model and spatial interaction of two exploited species of horse mackerel in the south-central Mediterranean Sea

Trachurus trachurus and Trachurus mediterraneus play an important role in the marine ecosystem and represent an important source of income for local economies related to fishery. This study aimed to improve the knowledge on the spatial distribution and habitat requirements of these two horse mackerels in the south-central Mediterranean Sea (Strait of Sicily) by applying specie distribution models. Species’ biomass HotSpots, areas where the highest abundances are concentrated, were modelled as a function of physical and oceanographic parameters. Predictive distribution maps were produced to identify species-specific spatial patterns and possible overlapping in the distribution areas of the two congeneric species. Depth, bottom salinity, bottom sea temperature, sea surface temperature variation and slope were the main drivers for horse mackerels habitat suitability. Predictive distribution maps revealed a clear spatial segregation between biomass HotSpots of the two species, which depends on complex abiotic and biotic relationships. Since horse mackerels are the main component of discards produced by deep rose shrimp fishery in the Strait of Sicily and due to the importance of discard reduction in the current fishery policies, the results can provide important information for setting up spatial-based management strategies for the Strait of Sicily fisheries aimed in particular at minimizing unwanted by-catches.

Key Economic Characteristics of Italian Trawl Fisheries and Management Challenges

Two key measures of economic performance are calculated and analyzed for three important Italian trawl fisheries (Northern Thyrrenian Sea, South of Sicily, Northern Adriatic Sea): the Net Economic Returns (NER), which informs on the economic performance and is considered a proxy of resource rent in fisheries and the Return on Fixed Tangible Assets (ROFTA), which is used as an approximation of the Return on Investment (ROI) and is a key financial and performance indicator for a fisherman in order to take a decision to operate in a fishery. The trend of these indicators over the last decade highlights a poor economic performance that is associated with an overall poor condition of the state of resources. The trend of economic performance indicators is put in relation, on a time-based approach, with the different types of management measures applied over the last decade. We show that trends of fishing effort and economic indicators as well as statistical analysis return a coherent interpretation of the main factors affecting the profitability levels of the selected fleets. The study reveals that management measures impacted negatively on the profitability of the sector in the short run. However, economic indicators inverted the trend in the last 3 years. An increasing biomass trend as well as the improvement in fishing mortality of some few stocks, together with the reduction of input costs could be considered as positive drivers which impacted positively on economic profitability of the fisheries concerned. The study argues that even the technical and fishery management provisions in the Mediterranean Sea may have started to reverse the trend in economic profitability of the analyzed fleets. An additional management effort needs, however, to be developed on an urgent basis in order to ensure the achievement of the management goals defined by the Common Fisheries Policy (CFP).