Faridah Abdullah

Differential expression of oil palm pathology genes during interactions with Ganoderma boninense and Trichoderma harzianum.

The expression profiles of Δ9 stearoyl-acyl carrier protein desaturase (SAD1 and SAD2) and type 3 metallothionein (MT3-A and MT3-B) were investigated in seedlings of oil palm (Elaeis guineensis) artificially inoculated with the pathogenic fungus Ganoderma boninense and the symbiotic fungus Trichoderma harzianum. Expression of SAD1 and MT3-A in roots and SAD2 in leaves were significantly up-regulated in G. boninense inoculated seedlings at 21 d after treatment when physical symptoms had not yet appeared and thereafter decreased to basal levels when symptoms became visible. Our finding demonstrated that the SAD1 expression in leaves was significantly down-regulated to negligible levels at 42 and 63 d after treatment. The transcripts of MT3 genes were synthesized in G. boninense inoculated leaves at 42 d after treatment, and the analyses did not show detectable expression of these genes before 42 d after treatment. In T. harzianum inoculated seedlings, the expression levels of SAD1 and SAD2 increased gradually and were stronger in roots than leaves, while for MT3-A and MT3-B, the expression levels were induced in leaves at 3d after treatment and subsequently maintained at same levels until 63d after treatment. The MT3-A expression was significantly up-regulated in roots at 3d after treatment and thereafter were maintained at this level. Both SAD and MT3 expression were maintained at maximum levels or at levels higher than basal. This study demonstrates that oil palm was able to distinguish between pathogenic and symbiotic fungal interactions, thus resulting in different transcriptional activation profiles of SAD and MT3 genes. Increases in expression levels of SAD and MT3 would lead to enhanced resistance against G. boninense and down-regulation of genes confer potential for invasive growth of the pathogen. Differences in expression profiles of SAD and MT3 relate to plant resistance mechanisms while supporting growth enhancing effects of symbiotic T. harzianum.

Sequence analysis and gene expression of putative exo- and endo-glucanases from oil palm (Elaeis guineensis) during fungal infection.

Glucanases are enzymes that hydrolyze a variety β-d-glucosidic linkages. Plant β-1,3-glucanases are able to degrade fungal cell walls; and promote the release of cell-wall derived fungal elicitors. In this study, three full-length cDNA sequences encoding oil palm (Elaeis guineensis) glucanases were analyzed. Sequence analyses of the cDNA sequences suggested that EgGlc1-1 is a putative β-d-glucan exohydolase belonging to glycosyl hydrolase (GH) family 3 while EgGlc5-1 and EgGlc5-2 are putative glucan endo-1,3-β-glucosidases belonging to GH family 17. The transcript abundance of these genes in the roots and leaves of oil palm seedlings treated with Ganoderma boninense and Trichoderma harzianum was profiled to investigate the involvement of these glucanases in oil palm during fungal infection. The gene expression of EgGlc1-1 in the root of oil palm seedlings was increased by T. harzianum but suppressed by G. boninense; while the gene expression of both EgGlc5-1 and EgGlc5-2 in the roots of oil palm seedlings was suppressed by G. boninense or/and T. harzianum.

Trichoderma atroviride as a bioremediator of Cu pollution: an in vitro study.

Isolated Trichoderma atroviride from Cu-polluted river sediment at the Serdang Industrial Area was studied under in vitro conditions to understand the mechanisms that allowed the fungi to thrive in the Cu-polluted freshwater ecosystem. From this study, adsorption was recognized as the main mechanism of Cu tolerance with 50–85% adsorption during the in vitro experiment. The uptake capacity of the isolate in liquid medium ranged from 0.8 to 11.2 mg g−1 in the potato dextrose broth medium with increasing Cu concentrations from 25 to 300 mg L−1. It was found that 2.7–5.0% of Cu was lost due to washing. The high percentage of Cu adsorption and the high uptake capacity of Cu by T. atroviride suggest that it is a potential bioremediator of Cu. However, further studies are needed to confirm its practical use as a bioremediating agent for Cu under field conditions.

Flavonoid glycosides in the leaves of Mimosa species

Mimosa L., a genus of pantropical legumes, contains 300–400 species with a heavy concentration of species in South America (Neilson, 1992). In Malaysia, Mimosa pudica L., M. quadrivalvis L. var. leptocarpa (DC.) Barneby, (syn: M. longihirsuta), M. pigra L. and M. invisa Mart. var. invisa are known as weedy elements that infest large areas of agricultural, residential, recreational, roadsides and derelict areas and ex-mining lands. Fresh leaves of the four species were collected from Bidong (Kedah) and Bidor (Perak). Representative voucher specimens of M. pudica (KLU22499), M. pigra (KLU-44404), M. quadrivalvis L. var. leptocarpa (KLU 44405) and M. invisa (KLU-001272) were deposited in the University of Malaya herbarium, Kuala Lumpur (KLU).

mRNA Expression of EgCHI1, EgCHI2, and EgCHI3 in Oil Palm Leaves (Elaeis guineesis Jacq.) after Treatment with Ganoderma boninense Pat. and Trichoderma harzianum Rifai

Background. Basal stem rot (BSR) disease caused by the fungus Ganoderma boninense is the most serious disease affecting the oil palm; this is because the disease escapes the early disease detection. The biocontrol agent Trichoderma harzianum can protect the disease only at the early stage of the disease. In the present study, the expression levels of three oil palm (Elaeis guineensis Jacq.) chitinases encoding EgCHI1, EgCHI2, and EgCHI3 at 2, 5, and 8 weeks inoculation were measured in oil palm leaves from plants treated with G. boninense or T. harzianum alone or both. Methods. The five-month-old oil palm seedlings were treated with Gano-wood blocks inoculum and trichomulch. Expression of EgCHI1, EgCHI2, and EgCHI3 in treated leaves tissue was determined by real-time PCR. Results. Oil palm chitinases were not strongly expressed in oil palm leaves of plants treated with G. boninense alone compared to other treatments. Throughout the 8-week experiment, expression of EgCHI1 increased more than 3-fold in leaves of plants treated with T. harzianum and G. boninense when compared to those of control and other treated plants. Conclusion. The data illustrated that chitinase cDNA expression varied depending on tissue and the type of treatment.