Fazilah Abd Manan

Characterization of the mechanism of prolonged adaptation to osmotic stress of Jeotgalibacillus malaysiensis via genome and transcriptome sequencing analyses

Jeotgalibacillus malaysiensis, a moderate halophilic bacterium isolated from a pelagic area, can endure higher concentrations of sodium chloride (NaCl) than other Jeotgalibacillus type strains. In this study, we therefore chose to sequence and assemble the entire J. malaysiensis genome. This is the first report to provide a detailed analysis of the genomic features of J. malaysiensis, and to perform genetic comparisons between this microorganism and other halophiles. J. malaysiensis encodes a native megaplasmid (pJeoMA), which is greater than 600 kilobases in size, that is absent from other sequenced species of Jeotgalibacillus. Subsequently, RNA-Seq-based transcriptome analysis was utilised to examine adaptations of J. malaysiensis to osmotic stress. Specifically, the eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) and KEGG (Kyoto Encyclopaedia of Genes and Genomes) databases were used to elucidate the overall effects of osmotic stress on the organism. Generally, saline stress significantly affected carbohydrate, energy, and amino acid metabolism, as well as fatty acid biosynthesis. Our findings also indicate that J. malaysiensis adopted a combination of approaches, including the uptake or synthesis of osmoprotectants, for surviving salt stress. Among these, proline synthesis appeared to be the preferred method for withstanding prolonged osmotic stress in J. malaysiensis.

Development of Novel Protocol to Al3+ Stress Tolerance at Germination Stage in Indica Rice through Statistical Approaches

Rice production is decreasing by abiotic stresses like heavy metals. In such circumstances, producing food for growing human population is a challenge for plant breeders. Excess of Al3+ in soil has become threat for high yield of rice. Improvement of crop is one of potential solution for high production. The aim of this study was to develop the new method for optimization of Al3+ toxicity tolerance in indica rice at germination stag using two-way ANOVA and Duncans multiple-range test (DMRT). Seeds of two indica rice cultivars (Pokkali and Pak Basmati) were exposed in different concentrations (control, 5 mM, 15 mM, and 20 mM) of Al3+ toxicity at pH 4 ±0.2 for two weeks. Germination traits such as final germination percentage (FG%), germination energy (GE), germination speed (GS), germination index (GI), mean time of germination (MGT), germination value (GV), germination velocity (GVe), peak value of germination (GPV), and germination capacity (GC) and growth traits such as root length (RL), shoot length (SL), total dry biomass (TDB), and germination vigour index (GVI) were measured. To obtain the maximum number of significance (≤ 0.01%) parameters in each concentration of Al3+ toxicity with control, two-way ANOVA was established and comparison of mean was done using DMRT. The results showed that 5 mM, 10 mM, and 15 mM have less significant effects on the above-mentioned parameters. However, 20 mM concentration of Al3+ produced significant effects (≤ 0.01%). Therefore, 20 mM of Al3+ is considered optimized limit for indica cultivars (Pokkali and Pak Basmati).

Physical and antioxidative responses of Orthosiphon stamineus towards various copper and lead concentrations

Abstract Plants normally change their physiological and biochemical properties when exposed to heavy metal stress. We investigated the response of Orthosiphon stamineus towards different concentrations of Pb (0, 2, 5, 8 mg/L) and Cu (1, 2, 4, 5 mg/L). Heavy metals left in soil, plant physical characteristics, and the level of antioxidants in O. stamineus were determined. Our results showed that the tested Pb concentrations did not significantly affect stem elongation, but at 2 mg/L, Pb increased the leaf growth. Pb at 5 and 8 mg/L increased the total plant biomass. In contrast, 5 mg/L Cu treatment affected stem elongation and the root length of O. stamineus. The concentrations of Pb and Cu in soil were significantly reduced after the plants were harvested. Biochemically, 5 mg/L Pb had significantly increased the activity of catalase, while Cu at 5 mg/L significantly reduced the activity of superoxide dismutase and ascorbate peroxidase. Total flavonoid content increased in Pb-treated plants, but the total phenolics content decreased. Cu treatment at 2 mg/L, on the other hand increased the total phenolics content. Our results demonstrated that O. stamineus adapt to metal stress via physical changes, and scavenge oxygen radicals through enzymatic and non-enzymatic antioxidant productions.