Felix Janssen

Benthic biogeochemistry: state of the art technologies and guidelines for the future of in situ survey

Sediment and water can potentially be altered, chemically, physically and biologically as they are sampled at the seafloor, brought to the surface, processed and analysed. As a result, in situ observations of relatively undisturbed systems have become the goal of a growing body of scientists. Our understanding of sediment biogeochemistry and exchange fluxes was revolutionized by the introduction of benthic chambers and in situ micro-electrode profilers that allow for the direct measurement of chemical fluxes between sediment and water at the sea floor and for porewater composition. Since then, rapid progress in the technology of in situ sensors and benthic chambers (such as the introduction of gel probes, voltammetric electrodes or one- and two-dimensional optodes) have yielded major breakthroughs in the scientific understanding of benthic biogeochemistry. This paper is a synthesis of discussions held during the workshop on sediment biogeochemistry at the “Benthic Dynamics: in situ surveillance of the sediment–water interface” international conference (Aberdeen, UK—March 25–29, 2002). We present a review of existing in situ technologies for the study of benthic biogeochemistry dynamics and related scientific applications. Limitations and possible improvement (e.g., technology coupling) of these technologies and future development of new sensors are discussed. There are countless important scientific and technical issues that lend themselves to investigation using in situ benthic biogeochemical assessment. While the increasing availability of these tools will lead research in yet unanticipated directions, a few emerging issues include greater insight into the controls on organic matter (OM) mineralization, better models for the understanding of benthic fluxes to reconcile microelectrode and larger-scale chamber measurements, insight into the impacts of redox changes on trace metal behavior, new insights into geochemical reaction pathways in surface sediments, and a better understanding of contaminant fate in nearshore sediments.

The impact of bedform migration on benthic oxygen fluxes

Permeable sediments are found wide spread in river beds and on continental shelves. The transport of these sediments is forced by bottom water currents and leads to the formation of bedforms such as ripples and dunes. The bottom water flow across the bedforms results in pressure gradients that drive pore water flow within the permeable sediment and enhance the supply of reactive substrates for biogeochemical processes. This transport-reaction system has been extensively studied for the case of stationary bedforms, whereas bedform migration—the most ubiquitous form of sediment transport—has been often ignored. To study the impact of sediment transport on pore water flow, we incorporated an empirical model of bedform migration into a numerical transport-reaction model for porous media, using oxygen as reactive solute. The modeled oxygen flux changes significantly as soon as the sediment divides into an upper mobile layer (migrating bedform) and a stationary layer underneath. The bedform is increasingly flushed with oxic bottom water, whereas pressure gradients and pore water flow reverse at increasing rate underneath the bedform. This suppresses net pore water displacement and reduces the oxygen penetration depth up to 90%. In effect, the overall oxygen uptake decreases significantly with bedform migration although bottom water velocities increase. This counterintuitive effect is systematically described for a range of different sediment types, current velocities, and respiration rates and should be considered in future studies.