Fermín San Primitivo

Evidence of three maternal lineages in near eastern sheep supporting multiple domestication events

The variability of mtDNA was analysed in local sheep breeds reared throughout Turkey, for which a fragment of the D-loop region and the complete cytochrome b were sequenced. Phylogenetic analyses performed independently for the D-loop and the Cyt b gene revealed three clearly separated clusters indicating three major maternal lineages, two of which had been previously described as types B and A. The new type, C, was present in all the breeds analysed and showed considerable mtDNA variability. Divergence time was obtained on the basis of Cyt b gene and was estimated to be around 160 000–170 000 years ago for lineages B and A, whereas the divergence of lineage C proved to have occurred earlier (between 450 000 and 750 000 years ago). These times greatly predate domestication and suggest that the origin of modern sheep breeds was more complex than previously thought and that at least three independent sheep domestication events occurred. Our results, together with archaeological information and the current wild sheep populations in the Near East region support the high importance of this area in the sheep domestication process. Finally, the evidence of a third maternal lineage has important implications regarding the history of modern sheep.

Differentiation among Spanish sheep breeds using microsatellites

Genetic variability at 18 microsatellites was analysed on the basis of individual genotypes in five Spanish breeds of sheep – Churra, Latxa, Castellana, Rasa-Aragonesa and Merino -, with Awassi also being studied as a reference breed. The degree of population subdivision calculated between Spanish breeds from FST diversity indices was around 7% of total variability. A high degree of reliability was obtained for individual-breed assignment from the 18 loci by using different approaches among which the Bayesian method provided to be the most efficient, with an accuracy for nine microsatellites of over 99%. Analysis of the Bayesian assignment criterion illustrated the divergence between any one breed and the others, which was highest for Awassi sheep, while no great differences were evident among the Spanish breeds. Relationships between individuals were analysed from the proportion of shared alleles. The resulting dendrogram showed a remarkable breed structure, with the highest level of clustering among members of the Spanish breeds in Latxa and the lowest in Merino sheep, the latter breed exhibiting a peculiar pattern of clustering, with animals grouped into several closely set nodes. Analysis of individual genotypes provided valuable information for understanding intra- and inter-population genetic differences and allowed for a discussion with previously reported results using populations as taxonomic units.

Mitochondrial diversity and the origin of Iberian sheep.

Mitochondrial DNA diversity was analysed in 19 Iberian and six foreign sheep breeds. Three mtDNA lineages (B, A and C) were found in the Iberian sheep, with type B clearly predominating over the others. The results were analysed for each of the morphologically determined breed groups in Iberian sheep: Merino, Entrefino, Churro and Iberian trunks. MtDNA lineage C was found only in the Iberian trunk composed of Montesina and Ojalada. These two populations had high mtDNA variability, and in the Iberian sheep only Merino Branco had more variation. The other three Merino types studied showed moderate variability, including the most authentic Merino, the Spanish Merino. These three Merinos clustered closely in a multidimensional scaling representation of distances, while the fourth breed (Merino Branco) showed a clear separation. As for the other two trunks, breeds from the Churro group showed greater maternal uniformity while results for populations included in the so-called Entrefino trunk seemed to have a more heterogeneous maternal origin. The results obtained are discussed with available data from nuclear markers and with morphological classifications, and all this information is analysed in relation to the origin of the different Iberian sheep breeds.

Genetic parameters for lactation traits of milking ewes: protein content and composition, fat, somatic cells and individual laboratory cheese yield

The effects of some environmental variation factors and the genetic parameters for total milk traits (fat content, protein content, casein content, serum protein content, lactation mean of individual laboratory cheese yield (LILCY), lactation mean of somatic cell count (LSCC), and milk yield) were estimated from the records of 1 111 Churra ewes. Genetic parameters were estimated by multivariate REML. Heritability for fat content was low (0.10) as is usually found in the Churra breed. Heritabilities for protein content, casein content, serum protein content, LILCY, milk yield and somatic cell count were 0.31, 0.30, 0.22, 0.09, 0.26 and 0.11, respectively. The highest heritability estimates were for protein and casein contents. Casein content is not advisable as an alternative to protein content as a selection criterion for cheese yield improvement; it does not have any compelling advantages and its measurement is costly. Our results for LSCC indicated that efforts should focus on improving the level of management rather than selecting for somatic cells, in the actual conditions of the Churra breed.

Effects of selective and complete dry therapy on prevalence of intramammary infection and on milk yield in the subsequent lactation in dairy ewes

The study was carried out in a commercial flock on 286 Churra breed ewes (566 half-udders) assigned to three lots depending on the type of antibiotic dry therapy received in the lactation previous to the one studied. One-hundred-and-four ewes were given complete therapy in all udders, 103 received selective therapy of infected half-udders, and 79 received no therapy at all. Half-udders of all animals were sampled for bacteriological study at < or = 72 h (lambing), 60 d, 120 d, and 155 d (drying-off) post partum. Dry therapy, parity number, lactation stage and therapy x parity interaction contributed significantly to variation in intramammary infection prevalence. Antibiotic dry therapy had the most significant effect. Prevalence during the whole of the subsequent lactation was significantly lower in lots receiving complete (18.8%) and selective (15.6%) dry therapy than in the untreated control lot (48.3%). Coagulase-negative staphylococci and streptococci (in particular Streptococcus agalactiae) were the organisms most significantly affected by dry therapy. In untreated ewes, prevalence increased noticeably from the 2nd to the 6th and subsequent lactations, but no significant changes were observed in the treated lots. Milk yield in the dry treated lots was 6.9% higher that in the untreated one. It was concluded that complete and selective treatments of ewes at drying-off were efficient and comparable methods of reducing the intramammary infection prevalence, improving bacteriological quality of milk, and increasing milk yield.

Quantitative trait loci for resistance to trichostrongylid infection in Spanish Churra sheep

BackgroundFor ruminants reared on grazing systems, gastrointestinal nematode (GIN) parasite infections represent the class of diseases with the greatest impact on animal health and productivity. Among the many possible strategies for controlling GIN infection, the enhancement of host resistance through the selection of resistant animals has been suggested by many authors. Because of the difficulty of routinely collecting phenotypic indicators of parasite resistance, information derived from molecular markers may be used to improve the efficiency of classical genetic breeding.MethodsA total of 181 microsatellite markers evenly distributed along the 26 sheep autosomes were used in a genome scan analysis performed in a commercial population of Spanish Churra sheep to detect chromosomal regions associated with parasite resistance. Following a daughter design, we analysed 322 ewes distributed in eight half-sib families. The phenotypes studied included two faecal egg counts (LFEC0 and LFEC1), anti-Teladorsagia circumcincta LIV IgA levels (IgA) and serum pepsinogen levels (Peps).ResultsThe regression analysis revealed one QTL at the 5% genome-wise significance level on chromosome 6 for LFEC1 within the marker interval BM4621-CSN3. This QTL was found to be segregating in three out of the eight families analysed. Four other QTL were identified at the 5% chromosome-wise level on chromosomes 1, 10 and 14. Three of these QTL influenced faecal egg count, and the other one had an effect on IgA levels.ConclusionThis study has successfully identified segregating QTL for parasite resistance traits in a commercial population. For some of the QTL detected, we have identified interesting coincidences with QTL previously reported in sheep, although most of those studies have been focused on young animals. Some of these coincidences might indicate that some common underlying loci affect parasite resistance traits in different sheep breeds. The identification of new QTL may suggest the existence of complex host-parasite relationships that have unique features depending on the host-parasite combination, perhaps due to the different mechanisms underlying resistance in adult sheep (hypersensitivity reactions) and lambs (immunity). The most significant QTL identified on chromosome 6 for LFEC1 may be the target for future fine-mapping research efforts.

Mapping quantitative trait loci for milk production traits on ovine chromosome 6.

Spanish Churra sheep were studied in a daughter design for the presence on chromosome 6 of quantitative trait loci (QTL) influencing milk production traits. Eight half-sib families were genotyped for 11 microsatellites and marker-QTL effects analysed using yield deviations (YD) as quantitative measurements for the following traits: milk yield, protein yield, and protein percentage. QTL analysis was performed by interval mapping based on multimarker regression principles. Significance thresholds were estimated through a permutation test followed by a correction for multiple testing. The results suggest a region on ovine chromosome 6, close to the casein cluster, with an influence on milk traits and particularly on protein percentage. These results, the first ones reported for QTL affecting milk traits in sheep, are discussed in relation to data available for cattle, a closely related species.

Genetic diversity in Turkish sheep

Abstract The genetic relevance of Turkish sheep has recently been revealed by mtDNA analysis, which has led to the identification of a third maternal lineage in that species. We present here a study of the genetic variation of these breeds at a nuclear level from the analysis of 30 microsatellite loci. Parameters of variability indicated a high level of variation in the breeds analysed. Mean number of alleles per locus ranged from 7.8 to 10.4 and gene diversity varied between 0.69 and 0.74. Considerable differences were detected between breeds regarding the pattern of within-breed variability. Breed-specific alleles were detected at most loci and all breeds analysed, a total of 75 private variants being identified. The Hemsin sheep showed noticeably lower genetic variation in accordance with the present status of this breed. Percentages of shared alleles (from 54.8% to 69.5%) and gene flow estimates (from 5.98 to 28.32) gave information about the relative genetic differentiation of breeds. The results presented here for nuclear DNA complement those reported for mtDNA and bear out the need to preserve this invaluable genetic material.

GENETIC STRUCTURE AND DIVERSITY OF FOUR CHILEAN SHEEP BREEDS

Chilean sheep breeds have a significant founder effect since they descend from very few parents, in some cases population inbreeding has increased and in others there have been significant differentiation processes as compared to their original population. The objective of this study was to estimate the current status of genetic diversity in sheep herds, which comprise the main sheep breeds in Chile, using molecular methods. Animals from four breeding herds were sampled and analyzed. The breeds studied were Corriedale, Suffolk Down, Romney Marsh and Chilota, these are the predominant numerical pure breeds in Chile. From each breed population 40 animals were sampled. Genetic characterization was done using nine microsatellite molecular markers (SSR) recommended by FAO-ISAG. Results showed that in the Chilean sheep herds there are low genetic complementarities among breeds and a high risk of losing genetic diversity due to inbreeding in Chilota and Romney Marsh breeds.

Phenotypic study on total and partial lifetime traits for dairy ewes

A data file on 36,396 lactations was used to determine the strength of the phenotypic relationship between productive, reproductive and lifespan traits for 7935 Spanish Churra ewes. These ewes first lambed between 1989 and 1997 and belonged to 23 flocks. The study took into account four lifespan traits (lifetime, productive life, useful life and lifetime score), three productive traits (total milk yield produced during lifetime, lambs weaned during ewe lifetime and total revenues from sold milk and weaned lambs during lifetime) and two reproductive traits (age at first lambing and mean interval between successive lambings). Moreover, milk yield and revenues from sold milk and weaned lambs were calculated per day of lifetime, productive life and useful life. Partial lifespan traits were considered for the first three parities. The model included flock, birth year within flock and season of birth of the ewe as fixed effects. The first two effects contributed significantly to variation in all traits, while season significantly affected lifespan traits, productive traits and age at first lambing. Milk production level was added to the model for lifespan traits only. It significantly contributed to explaining the variation in all lifespan traits with high percentage of variance explained averaging 14.91%. Lifetime averaged 2324 d. Productive life accounted for 57% of lifetime while useful life represented 50% of productive life. Age at first lambing averaged 622 d and average days dry during lifetime was 560. During lifetime, ewes gave an average of 4.6 parities, 6.5 weaned lambs and 636 l of milk. Average revenue from milk and lambs during lifetime was 673 euros. Milk/day of lifetime, productive life and useful life averaged 0.26, 0.51 and 0.93 l, respectively. The corresponding per-day revenues from sold milk and weaned lambs were, 0.27 euros, 0.55 euros and 1.01 euros, respectively. Lifespan and productive traits had strong relationships (rp among these traits ranged between 0.75 and 0.95). Two-parity and three-parity per-day milk yield had moderately high correlation (0.70-0.83) with total lifetime per-day milk yield traits. Therefore, good use of these traits would be helpful in determining best individuals early in life.