Fiona M. Soper

Nitrate paradigm does not hold up for sugarcane.

Modern agriculture is based on the notion that nitrate is the main source of nitrogen (N) for crops, but nitrate is also the most mobile form of N and easily lost from soil. Efficient acquisition of nitrate by crops is therefore a prerequisite for avoiding off-site N pollution. Sugarcane is considered the most suitable tropical crop for biofuel production, but surprisingly high N fertilizer applications in main producer countries raise doubt about the sustainability of production and are at odds with a carbon-based crop. Examining reasons for the inefficient use of N fertilizer, we hypothesized that sugarcane resembles other giant tropical grasses which inhibit the production of nitrate in soil and differ from related grain crops with a confirmed ability to use nitrate. The results of our study support the hypothesis that N-replete sugarcane and ancestral species in the Andropogoneae supertribe strongly prefer ammonium over nitrate. Sugarcane differs from grain crops, sorghum and maize, which acquired both N sources equally well, while giant grass, Erianthus, displayed an intermediate ability to use nitrate. We conclude that discrimination against nitrate and a low capacity to store nitrate in shoots prevents commercial sugarcane varieties from taking advantage of the high nitrate concentrations in fertilized soils in the first three months of the growing season, leaving nitrate vulnerable to loss. Our study addresses a major caveat of sugarcane production and affords a strong basis for improvement through breeding cultivars with enhanced capacity to use nitrate as well as through agronomic measures that reduce nitrification in soil.

Arabidopsis and Lobelia anceps access small peptides as a nitrogen source for growth

While importance of amino acids as a nitrogen source for plants is increasingly recognised, other organic N sources including small peptides have received less attention. We assessed the capacity of functionally different species, annual and nonmycorrhizal Arabidopsis thaliana (L.) Heynh. (Brassicaceae) and perennial Lobelia anceps L.f. (Campanulaceae), to acquire, metabolise and use small peptides as a N source independent of symbionts. Plants were grown axenically on media supplemented with small peptides (2-4 amino acids), amino acids or inorganic N. In A. thaliana, peptides of up to four amino acid residues sustained growth and supported up to 74% of the maximum biomass accumulation achieved with inorganic N. Peptides also supported growth of L. anceps, but to a lesser extent. Using metabolite analysis, a proportion of the peptides supplied in the medium were detected intact in root and shoot tissue together with their metabolic products. Nitrogen source preferences, growth responses and shoot-root biomass allocation were species-specific and suggest caution in the use of Arabidopsis as the sole plant model. In particular, glycine peptides of increasing length induced effects ranging from complete inhibition to marked stimulation of root growth. This study contributes to emerging evidence that plants can acquire and metabolise organic N beyond amino acids.

Investigating patterns of symbiotic nitrogen fixation during vegetation change from grassland to woodland using fine scale δ 15 N measurements

Biological nitrogen fixation (BNF) in woody plants is often investigated using foliar measurements of δ(15) N and is of particular interest in ecosystems experiencing increases in BNF due to woody plant encroachment. We sampled δ(15) N along the entire N uptake pathway including soil solution, xylem sap and foliage to (1) test assumptions inherent to the use of foliar δ(15) N as a proxy for BNF; (2) determine whether seasonal divergences occur between δ(15) Nxylem sap and δ(15) Nsoil inorganic N that could be used to infer variation in BNF; and (3) assess patterns of δ(15) N with tree age as indicators of shifting BNF or N cycling. Measurements of woody N-fixing Prosopis glandulosa and paired reference non-fixing Zanthoxylum fagara at three seasonal time points showed that δ(15) Nsoil inorganic N varied temporally and spatially between species. Fractionation between xylem and foliar δ(15) N was consistently opposite in direction between species and varied on average by 2.4‰. Accounting for these sources of variation caused percent nitrogen derived from fixation values for Prosopis to vary by up to ∼70%. Soil-xylem δ(15) N separation varied temporally and increased with Prosopis age, suggesting seasonal variation in N cycling and BNF and potential long-term increases in BNF not apparent through foliar sampling alone.

Nitrogen trace gas fluxes from a semiarid subtropical savanna under woody legume encroachment

Savanna ecosystems are a major source of nitrogen (N) trace gases that influence air quality and climate. These systems are experiencing widespread encroachment by woody plants, frequently associated with large increases in soil N, with no consensus on implications for trace gas emissions. We investigated the impact of encroachment by N-fixing tree Prosopis glandulosa on total reactive N gas flux (Nt = NO + N2O + NOy + NH3) from south Texas savanna soils over 2 years. Contrary to expectations, upland Prosopis groves did not have greater Nt fluxes than adjacent unencroached grasslands. However, abiotic conditions (temperature, rainfall, and topography) were strong drivers. Emissions from moist, low-lying Prosopis playas were up to 3 times higher than from Prosopis uplands. Though NO dominated emissions, NH3 and NOy (non-NO oxidized N) comprised 12–16% of the total summer N flux (up to 7.9 µg N m−2 h−1). Flux responses to soil wetting were temperature dependent for NO, NH3, and NOy: a 15 mm rainfall event increased flux 3-fold to 22-fold after 24 h in summer but had no effect in winter. Repeated soil wetting reduced N flux responses, indicating substrate depletion as a likely control. Rapid (<1 min) increases in NO emissions following wetting of dry soils suggested that abiotic chemodenitrification contributes to pulse emissions. We conclude that temperature and wetting dynamics, rather than encroachment, are primary drivers of N flux from these upland savannas, with implications for future emission patterns under altered precipitation regimes.

Soil carbon dioxide emissions from the Mojave desert: Isotopic evidence for a carbonate source

Arid soils represent a substantial carbonate pool, and may participate in surface-atmosphere CO2 exchange via a diel cycle of carbonate dissolution and exsolution. We used a Keeling plot approach to determine the substrate δ13C of CO2 emitted from carbonate-dominated soils in the Mojave Desert, and found evidence for a non-respiratory source that increased with surface temperature. In dry soils at 25-30 °C, the CO2 substrate had δ13C values of -19.4 ± 4.2‰, indicative of respiration of organic material (soil organic matter = -23.1 ± 0.8‰). CO2 flux increased with temperature; maximum fluxes occurred above 60 °C, where δ13CO2-substrate (-7.2‰ ± 2.8‰) approached soil carbonate values (0.2 ± 0.2 ‰). In wet soils, CO2 emissions were not temperature dependent, and δ13CO2-substrate was lower in vegetated soils with higher flux rates, higher organic C content and potential root respiration. These data provide the first direct evidence of CO2 emissions from alkaline desert soils derived from an abiotic source, and that diurnal emissions patterns are strongly driven by surface temperature.