Flávio Henrique Guimarães Rodrigues

Squamate reptiles from Parque Nacional das Emas and surroundings, Cerrado of Central Brazil

We present a list of squamate reptiles from Parque Nacional da Emas (PNE), ten neighbor private properties and Parque Estadual Nascentes do Rio Taquari, states of Goias, Mato Grosso, and Mato Grosso do Sul. The study area encompasses the headwaters of Araguaia and Taquari river basins and part of Paranaiba River Basin, resulting in significant habitat heterogeneity. Inside PNE, we recorded 74 squamate species: 47 snakes, 21 lizards and six amphisbaenians. If we consider also the neighboring areas, richness value raises to 87 species: 54 snakes, 27 lizards and six amphisbaenians. From these, 52 % of the lizards, 19 % of the snakes and 33 % of the amphisbaenians are Cerrado endemics. Forest-specialist species are more common outside than inside PNE. Additional species are expected to occur in the PNE region, in view of their known geographical ranges.

Habitat loss and mammalian extinction patterns: are the reserves in the Quadrilátero Ferrífero, southeastern Brazil, effective in conserving mammals?

Habitat loss is considered to be the principal cause of the local extinction of mammals worldwide. We assessed the extinction pattern of medium- and large-sized mammals caused by the effects of habitat loss in reserves in the Quadrilátero Ferrífero, southeastern Brazil, and discussed the effectiveness of these natural remnants for conserving mammals. A literature review and field collections were conducted from 2006 to 2011 to estimate the composition and richness of mammals in nine remnants of different sizes, including reserves and non-protected areas. A species–area relation and a nested subset analysis were performed, and a degree of sensitivity to habitat loss was obtained for each species according to its frequency of occurrence. Forty-five species of mammals were recorded. There was a strong species–area relation involving the legal size of reserves. High species richness was associated with large reserves, and the z value was within the range of very isolated continental remnants. The mammalian community exhibited a nested occurrence pattern, suggesting that most species were part of a more continuous ecosystem and that non-random extinction caused by habitat loss occurred in southeastern Brazil. The negative relation found between species frequencies and body weights suggested that selective species loss is associated with decreases in the size of the reserves. The estimated viable size required to conserve all of the sensitive species is greater than the size of the largest reserve inventoried. We recommend the aggregation of neighboring natural remnants and the creation of new reserves to reduce extinction risks.

An evaluation of manual and automated methods for detecting sounds of maned wolves (Chrysocyon brachyurus Illiger 1815)

Although bioacoustics is increasingly used to study species and environments for their monitoring and conservation, detecting calls produced by species of interest is prohibitively time consuming when done manually. Here we compared four methods for detecting and identifying roar-barks of maned wolves (Chrysocyon brachyurus) within long sound recordings: (1) a manual method, (2) an automated detector method using Raven Pro 1.4, (3) an automated detector method using XBAT and (4) a mixed method using XBATs detector followed by manual verification. Recordings were done using a song meter installed at the Serra da Canastra National Park (Minas Gerais, Brazil). For each method we evaluated the following variables in a 24-h recording: (1) total time required analysing files, (2) number of false positives identified and (3) number of true positives identified compared to total number of target sounds. Automated methods required less time to analyse the recordings (77–93 min) when compared to manual method (189 min), but consistently presented more false positives and were less efficient in identifying true positives (manual = 91.89%, Raven = 32.43% and XBAT = 84.86%). Adding a manual verification after XBAT detection dramatically increased efficiency in identifying target sounds (XBAT+manual = 100% true positives). Manual verification of XBAT detections seems to be the best way out of the proposed methods to collect target sound data for studies where large amounts of audio data need to be analysed in a reasonable time (111 min, 58.73% of the time required to find calls manually).

Cross-amplification and characterization of 13 tetranucleotide microsatellites in multiple species of Neotropical canids

We tested 47 tetranucleotide microsatellite loci developed for the domestic dog in four species of Neotropical canids, aiming to produce a standardized set that could be successfully used even in noninvasive samples across this group. We identified 13 suitable loci, nine of which constitute a standardized set for all species. Considering only the ideal panel of nine loci, the mean expected heterozygosity (averaged across species) per locus ranged from 0.58 to 0.92 (overall mean 0.76), and the maximum probability of identity value was 1.3 × 10−9. This set of loci has a great potential for application in evolutionary, ecological and conservation studies.

How much evidence is enough evidence for a new species

Voss et al. (this issue) took issue with our paper on a new species of Tapirus (Cozzuol et al. 2013), claiming that the evidence we presented was not “extraordinary” enough to support a new species of large mammal in the Amazon. We agree that a new large mammal species attracts more attention than a new smaller species; however, there is no real scientific reason for evidence requirements to be stricter due to animal size or popularity. We believe our evidence was sufficient to propose a new species and in this paper we counter point by point the objections raised by our colleagues. We revisit the phylogenetic analyses of molecular data, the multivariate analyses of morphometric data, the qualitative character differences, and indigenous knowledge.

ATLANTIC‐CAMTRAPS: a dataset of medium and large terrestrial mammal communities in the Atlantic Forest of South America

Our understanding of mammal ecology has always been hindered by the difficulties of observing species in closed tropical forests. Camera trapping has become a major advance for monitoring terrestrial mammals in biodiversity rich ecosystems. Here we compiled one of the largest datasets of inventories of terrestrial mammal communities for the Neotropical region based on camera trapping studies. The dataset comprises 170 surveys of medium to large terrestrial mammals using camera traps conducted in 144 areas by 74 studies, covering six vegetation types of tropical and subtropical Atlantic Forest of South America (Brazil and Argentina), and present data on species composition and richness. The complete dataset comprises 53,438 independent records of 83 species of mammals, includes 10 species of marsupials, 15 rodents, 20 carnivores, eight ungulates and six armadillos. Species richness averaged 13 species (±6.07 SD) per site. Only six species occurred in more than 50% of the sites: the domestic dog Canis familiaris, crab-eating fox Cerdocyon thous, tayra Eira barbara, south American coati Nasua nasua, crab-eating raccoon Procyon cancrivorus and the nine-banded armadillo Dasypus novemcinctus. The information contained in this dataset can be used to understand macroecological patterns of biodiversity, community, and population structure, but also to evaluate the ecological consequences of fragmentation, defaunation, and trophic interactions.

Can Scat Analysis Describe the Feeding Habits of Big Cats? A Case Study with Jaguars (Panthera onca) in Southern Pantanal, Brazil

Large cats feeding habits have been studied through two main methods: scat analysis and the carcasses of prey killed by monitored animals. From November 2001 to April 2004, we studied jaguar predation patterns using GPS telemetry location clusters on a cattle ranch in southern Pantanal. During this period, we recorded 431 carcasses of animals preyed upon by monitored jaguars. Concurrently, we collected 125 jaguar scats opportunistically. We compared the frequencies of prey found through each method. We also compared the prey communities using Bray-Curtis similarity coefficient. These comparisons allowed us to evaluate the use of scat analysis as a means to describe jaguar feeding habits. Both approaches identified prey communities with high similarity (Bray-Curtis coefficient > 70). According to either method, jaguars consume three main prey: cattle (Bos taurus), caiman (Caiman yacare) and peccaries (Tayassu pecari and Pecari tajacu). The two methods did not differ in the frequency of the three main prey over dry and wet seasons or years sampled. Our results show that scat analysis is effective and capable of describing jaguar feeding habits.

SEROLOGIC SURVEY OF INFECTIOUS DISEASES IN POPULATIONS OF MANED WOLF (CHRYSOCYON BRACHYURUS) AND CRAB-EATING FOX (CERDOCYON THOUS) FROM ÁGUAS EMENDADAS ECOLOGICAL STATION, BRAZIL

Abstract:  Domestic dogs are reservoirs for many infectious diseases and may represent a potential source of infection for wild canid populations. A serologic investigation of antibodies to Toxoplasma gondii, Neospora caninum, Brucella abortus, and Leptospira spp. was conducted on three maned wolves (Chrysocyon brachyurus) and seven crab-eating foxes (Cerdocyon thous), all free-living, at the Águas Emendadas Ecological Station (ESECAE), Federal District, Brazil, between February and October 2006. Out of the 10 samples analyzed, eight (80%) were seropositive for T. gondii: 3/3 (100%) of the maned wolves and 5/7 (71.4%) of the crab-eating foxes. None of the animals presented anti–N. caninum, B. abortus, and Leptospira spp. antibodies. This study demonstrated that the wild canid populations at ESECAE presented high exposure to T. gondii and indicated that there is high environmental contamination at the Station, which can be attributed to its proximity to urban zones, the presence of domestic cats in the study area, or the existence of other wild infected felines.

Geographic distribution of the European hare (Lepus europaeus) in Brazil and new records of occurrence for the Cerrado and Atlantic Forest biomes

Abstract The introduction of alien species is among the main causes of biodiversity loss. There are many documented cases of introduced mammals having severe impacts on the ecosystem. The European hare (Lepus europaeus), native to Europe and Asia, was introduced to southern Brazil in the 1950s and has since expanded its geographic distribution considerably. In this study, we present a review of the known distribution of the European hare in Brazil, add new records of occurrence that expand the species distribution into southeastern Brazil and estimate the species dispersal rate in Brazil. We compiled at total of 135 distinct localities of occurrence for the species in Brazil, including published records and the previously unknown localities presented here. These records indicate a dispersal rate of 45.35 km/year for the introduced species. Of these known localities, 15 are in protected areas. Because of its high potential for even greater geographic dispersal and potential impacts on native species through competition and disease transmission, we recommend further research to better assess the species status and the implementation of public policies and management controls, especially in protected areas.

Regionally extinct species rediscovered: the bush dog Speothos venaticus in Minas Gerais, south-eastern Brazil

The bush dog Speothos venaticus , a rare Near Threatened South American canid that lives in packs, was thought to be extinct in Minas Gerais state, south-eastern Brazil, until recently. Here, we report four recent records of the species in Minas Gerais, the first in the state since the description of the species in 1842. All records are from the Cerrado ecosystem in the north and north-west of the state; two are from animals found dead, one from footprints and another from a camera trap. Three of the records were inside or close (