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Dive into the research topics where Fonda M. Newcomb is active.

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Featured researches published by Fonda M. Newcomb.


Journal of Clinical Oncology | 2000

Activity of Thalidomide in AIDS-Related Kaposi’s Sarcoma

Richard F. Little; Kathleen M. Wyvill; James M. Pluda; Lauri Welles; Vickie Marshall; William D. Figg; Fonda M. Newcomb; Giovanna Tosato; Ellen Feigal; Seth M. Steinberg; Denise Whitby; James J. Goedert; Robert Yarchoan

PURPOSE To assess the toxicity and activity of oral thalidomide in Kaposis sarcoma (KS) in a phase II dose-escalation study. PATIENTS AND METHODS Human immunodeficiency virus (HIV)-seropositive patients with biopsy-confirmed KS that progressed over the 2 months before enrollment received an initial dose of 200 mg/d of oral thalidomide in a phase II study. The dose was increased to a maximum of 1,000 mg/d for up to 1 year. Anti-HIV therapy was maintained during the study period. Toxicity, tumor response, immunologic and angiogenic factors, and virologic parameters were assessed. RESULTS Twenty patients aged 29 to 49 years with a median CD4 count of 246 cells/mm(3) (range, 14 to 646 cells/mm(3)) were enrolled. All patients were assessable for toxicity, and 17 for response. Drowsiness in nine and depression in seven patients were the most frequent toxicities observed. Eight (47%; 95% confidence interval [CI], 23% to 72%) of the 17 assessable patients achieved a partial response, and an additional two patients had stable disease. Based on all 20 patients treated, the response rate was 40% (95% CI, 19% to 64%). The median thalidomide dose at the time of response was 500 mg/d (range, 400 to 1,000 mg/d). The median duration of drug treatment was 6.3 months, and the median time to progression was 7.3 months. CONCLUSION Oral thalidomide was tolerated in this population at doses up to 1,000 mg/d for as long as 12 months and was found to induce clinically meaningful anti-KS responses in a sizable subset of the patients. Additional studies of this agent in KS are warranted.


The Journal of Infectious Diseases | 1998

Relative Potency of Protease Inhibitors in Monocytes/Macrophages Acutely and Chronically Infected with Human Immunodeficiency Virus

Carlo Federico Perno; Fonda M. Newcomb; David A. Davis; Stefano Aquaro; Rachel W. Humphrey; Raffaele Caliò; Robert Yarchoan

The activity of three human immunodeficiency virus (HIV) protease inhibitors was investigated in human primary monocytes/macrophages (M/M) chronically infected by HIV-1. Saquinavir, KNI-272, and ritonavir inhibited the replication of HIV-1 in vitro, with EC50s of approximately 0.5-3.3 microM. However, only partial inhibition was achievable, even at the highest concentrations tested. Also, the activity of these drugs in chronically infected M/M was approximately 7- to 26-fold lower than in acutely infected M/M and approximately 2- to 10-fold lower than in chronically infected H9 lymphocytes. When protease inhibitors were removed from cultures of chronically infected M/M, production of virus rapidly returned to the levels found in untreated M/M. Therefore, relatively high concentrations of protease inhibitors are required to suppress HIV-1 production in chronically infected macrophages, and such cells may be a vulnerable point for the escape of virus in patients taking these drugs.


The Journal of Infectious Diseases | 1997

Detection of Serum Antibodies to a Kaposi's Sarcoma—Associated Herpesvirus-Specific Peptide

David A. Davis; Rachel W. Humphrey; Fonda M. Newcomb; Thomas R. O'Brien; James J. Goedert; Stephen E. Straus; Robert Yarchoan

Kaposis sarcoma (KS)-associated herpesvirus/human herpesvirus type 8 (KSHV/HHV-8) may play an etiologic role in the pathogenesis of KS. In an attempt to assess KSHV/HHV-8 infection, an ELISA was developed using an 18-amino acid peptide from a putative minor capsid protein of KSHV/HHV-8 conjugated to bovine serum albumin. Overall, sera from human immunodeficiency virus type 1 (HIV-1)-positive patients with KS had a higher reactivity in the assay than did sera from HIV-1-positive patients without KS (P = .018). Of 35 HIV-1-positive patients with KS, 60% were antibody positive, compared with 27% of 33 HIV-1-positive patients without KS. Of 30 healthy blood donors, 20% were antibody positive. The ELISA responses did not correlate with antibody titers to Epstein-Barr virus. Given the homology and antigenic relatedness between KSHV/HHV-8 and Epstein-Barr virus, serologic assays involving unique KSHV/HHV-8 peptides may prove to be valuable in defining the epidemiology and clinical expression of this virus.


Biochemical Journal | 2000

HIV-2 protease is inactivated after oxidation at the dimer interface and activity can be partly restored with methionine sulphoxide reductase.

David A. Davis; Fonda M. Newcomb; Jackob Moskovitz; Paul T. Wingfield; Stephen J. Stahl; Joshua D. Kaufman; Henry M. Fales; Rodney L. Levine; Robert Yarchoan

Human immunodeficiency viruses encode a homodimeric protease that is essential for the production of infectious virus. Previous studies have shown that HIV-1 protease is susceptible to oxidative inactivation at the dimer interface at Cys-95, a process that can be reversed both chemically and enzymically. Here we demonstrate a related yet distinct mechanism of reversible inactivation of the HIV-2 protease. Exposure of the HIV-2 protease to H(2)O(2) resulted in conversion of the two methionine residues (Met-76 and Met-95) to methionine sulphoxide as determined by amino acid analysis and mass spectrometry. This oxidation completely inactivated protease activity. However, the activity could be restored (up to 40%) after exposure of the oxidized protease to methionine sulphoxide reductase. This treatment resulted in the reduction of methionine sulphoxide 95 but not methionine sulphoxide 76 to methionine, as determined by peptide mapping/mass spectrometry. We also found that exposure of immature HIV-2 particles to H(2)O(2) led to the inhibition of polyprotein processing in maturing virus particles comparable to that demonstrated for HIV-1 particles. Thus oxidative inactivation of the HIV protease in vitro and in maturing viral particles is not restricted to the type 1 proteases. These studies indicate that two distinct retroviral proteases are susceptible to inactivation after a very minor modification at residue 95 of the dimer interface and suggest that the dimer interface might be a viable target for the development of novel protease inhibitors.


Journal of Virology | 2003

Reversible Oxidative Modification as a Mechanism for Regulating Retroviral Protease Dimerization and Activation

David A. Davis; Cara A. Brown; Fonda M. Newcomb; Emily S. Boja; Henry M. Fales; Joshua D. Kaufman; Stephen J. Stahl; Paul T. Wingfield; Robert Yarchoan

ABSTRACT Human immunodeficiency virus protease activity can be regulated by reversible oxidation of a sulfur-containing amino acid at the dimer interface. We show here that oxidation of this amino acid in human immunodeficiency virus type 1 protease prevents dimer formation. Moreover, we show that human T-cell leukemia virus type 1 protease can be similarly regulated through reversible glutathionylation of its two conserved cysteine residues. Based on the known three-dimensional structures and multiple sequence alignments of retroviral proteases, it is predicted that the majority of retroviral proteases have sulfur-containing amino acids at the dimer interface. The regulation of protease activity by the modification of a sulfur-containing amino acid at the dimer interface may be a conserved mechanism among the majority of retroviruses.


Methods in Enzymology | 2002

Reversible oxidation of HIV-2 protease.

David A. Davis; Fonda M. Newcomb; Jackob Moskovitz; Henry M. Fales; Rodney L. Levine; Robert Yarchoan

Publisher Summary The enzyme HIV-2 protease contains two conserved methionine residues. Although methionine is generally not considered a conservative substitute for cysteine, both amino acids are susceptible to oxidative modification and, therefore, inhibit the HIV-2 protease following oxidation. Methionines become oxidized in a variety of proteins and, for some proteins; oxidation can be reversed in vitro following treatment of the peptide with methionine sulfoxide reductase (MsrA). MsrA has been implicated in the repair of oxidative damage to various proteins, and studies involving a MsrA mutant in yeast cells indicate that this enzyme functions to reverse the oxidative damage that occurs following oxidative stress in vivo. These studies suggest a potential for regulation of protein function by reversible methionine oxidation. This chapter describes methods developed to specifically oxidize the methionine residues of HIV-2 protease and examine the effect on HIV-2 protease activity. In addition, there are techniques to partially reverse this process in vitro, thus restoring HIV-2 protease activity. This chapter describes these techniques and highlights the effects of reversible methionine oxidation on HIV-2 function.


Leukemia & Lymphoma | 1998

Human herpesvirus 8 (HHV-8) in the pathogenesis of Kaposi's sarcoma and other diseases.

Rachel W. Humphrey; David A. Davis; Fonda M. Newcomb; Robert Yarchoan

The discovery of Kaposis Sarcoma-associated herpesvirus/human herpesvirus-8 (KSHV/ HHV-8) and subsequent studies of this virus have provided a body of evidence that support the concept that this is an etiologic agent for Kaposis sarcoma (KS). Several studies have indicated that this virus may also be a causal agent for primary effusion lymphoma (PEL) and Castlemans disease as well. First generation serologic assays for HHV-8 have now been developed. The preponderance of data suggest that the incidence of HHV-8 infection is highest in populations at risk for KS: male homosexuals, immunosuppressed patients, and those who live in endemic regions. HHV-8 encodes for functional homologs of human proteins that may play a role in the development of disease. As we learn more about the steps by which this virus can lead to KS and/or other diseases, rational therapies and preventative strategies may be possible.


Antimicrobial Agents and Chemotherapy | 2002

Oxidative Modifications of Kynostatin-272, a Potent Human Immunodeficiency Virus Type 1 Protease Inhibitor: Potential Mechanism for Altered Activity in Monocytes/Macrophages

David A. Davis; Elizabeth Read-Connole; Kara Pearson; Henry M. Fales; Fonda M. Newcomb; Jackob Moskovitz; Robert Yarchoan

ABSTRACT Previous studies have indicated that human immunodeficiency virus type 1 (HIV-1) protease inhibitors (PIs) are less active at blocking viral replication in HIV-1 infected peripheral blood monocytes/macrophages (M/M) than in HIV-1-infected T cells. We explored the hypothesis that oxidative modification and/or metabolism of the PIs in M/M might account for this reduced potency. We first tested the susceptibility of several PIs (kynostatin-272 [KNI-272], saquinavir, indinavir, ritonavir, or JE-2147) to oxidation after exposure to hydrogen peroxide (H2O2): only KNI-272 was highly susceptible to oxidation. Treatment of KNI-272 with low millimolar concentrations of H2O2 resulted in mono-oxidation of the sulfur in the S-methyl cysteine (methioalanine) moiety, as determined by reversed-phase high-performance liquid chromatography and mass spectrometry (RP-HPLC/MS). Higher concentrations of H2O2 led to an additional oxidation of the sulfur in the thioproline moiety of KNI-272. None of the PIs were metabolized or oxidized when added to T cells and cultured for up to 12 days. However, when KNI-272 was added to M/M, the concentration of the original KNI-272 steadily decreased with a corresponding increase in the production of three KNI-272 metabolites as identified by RP-HPLC/MS. The structures of these metabolites were different from those produced by H2O2 treatment. The two major products of M/M metabolism of KNI-272 were identified as isomeric forms of KNI-272 oxidized solely on the thioproline ring. Both metabolites had reduced capacities to inhibit HIV-1 protease activity when tested in a standard HIV-1 protease assay. These studies demonstrate that antiviral compounds can be susceptible to oxidative modification in M/M and that this can affect their antiviral potency.


Journal of Virology | 1999

Conserved Cysteines of the Human Immunodeficiency Virus Type 1 Protease Are Involved in Regulation of Polyprotein Processing and Viral Maturation of Immature Virions

David A. Davis; Keisuke Yusa; Laura Gillim; Fonda M. Newcomb; Hiroaki Mitsuya; Robert Yarchoan


Journal of Acquired Immune Deficiency Syndromes | 1998

Preliminary results of a phase II study of oral thalidomide in patients with AIDS-related Kaposl's sarcoma (KS)

Richard F. Little; Lauri Welles; Kathleen M. Wyvill; James M. Pluda; William D. Figg; Fonda M. Newcomb; Giovanna Tosato; Robert Yarchoan

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Robert Yarchoan

National Institutes of Health

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David A. Davis

National Institutes of Health

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Henry M. Fales

National Institutes of Health

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Rachel W. Humphrey

National Institutes of Health

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James J. Goedert

National Institutes of Health

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Giovanna Tosato

National Institutes of Health

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Joshua D. Kaufman

National Institutes of Health

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Kathleen M. Wyvill

National Institutes of Health

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