Francien Peterse

Low‐ammonia niche of ammonia‐oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant

The first step of nitrification is catalysed by both ammonia-oxidizing bacteria (AOB) and archaea (AOA), but physicochemical controls on the relative abundance and function of these two groups are not yet fully understood, especially in freshwater environments. This study investigated ammonia-oxidizing populations in nitrifying rotating biological contactors (RBCs) from a municipal wastewater treatment plant. Individual RBC stages are arranged in series, with nitrification at each stage creating an ammonia gradient along the flowpath. This RBC system provides a valuable experimental system for testing the hypothesis that ammonia concentration determines the relative abundance of AOA and AOB. The results demonstrate that AOA increased as ammonium decreased across the RBC flowpath, as indicated by qPCR for thaumarchaeal amoA and 16S rRNA genes, and core lipid (CL) and intact polar lipid (IPL) crenarchaeol abundances. Overall, there was a negative logarithmic relationship (R2 = 0.51) between ammonium concentration and the relative abundance of AOA amoA genes. A single AOA population was detected in the RBC biofilms; this phylotype shared low amoA and 16S rRNA gene homology with existing AOA cultures and enrichments. These results provide evidence that ammonia availability influences the relative abundances of AOA and AOB, and that AOA are abundant in some municipal wastewater treatment systems.

An interlaboratory study of TEX86 and BIT analysis of sediments, extracts, and standard mixtures

Two commonly used proxies based on the distribution of glycerol dialkyl glycerol tetraethers (GDGTs) are the TEX86 (TetraEther indeX of 86 carbon atoms) paleothermometer for sea surface temperature reconstructions and the BIT (Branched Isoprenoid Tetraether) index for reconstructing soil organic matter input to the ocean. An initial round-robin study of two sediment extracts, in which 15 laboratories participated, showed relatively consistent TEX86 values (reproducibility +/- 3-4 degrees C when translated to temperature) but a large spread in BIT measurements (reproducibility +/- 0.41 on a scale of 0-1). Here we report results of a second round-robin study with 35 laboratories in which three sediments, one sediment extract, and two mixtures of pure, isolated GDGTs were analyzed. The results for TEX86 and BIT index showed improvement compared to the previous round-robin study. The reproducibility, indicating interlaboratory variation, of TEX86 values ranged from 1.3 to 3.0 degrees C when translated to temperature. These results are similar to those of other temperature proxies used in paleoceanography. Comparison of the results obtained from one of the three sediments showed that TEX86 and BIT indices are not significantly affected by interlaboratory differences in sediment extraction techniques. BIT values of the sediments and extracts were at the extremes of the index with values close to 0 or 1, and showed good reproducibility (ranging from 0.013 to 0.042). However, the measured BIT values for the two GDGT mixtures, with known molar ratios of crenarchaeol and branched GDGTs, had intermediate BIT values and showed poor reproducibility and a large overestimation of the true (i.e., molar-based) BIT index. The latter is likely due to, among other factors, the higher mass spectrometric response of branched GDGTs compared to crenarchaeol, which also varies among mass spectrometers. Correction for this different mass spectrometric response showed a considerable improvement in the reproducibility of BIT index measurements among laboratories, as well as a substantially improved estimation of molar-based BIT values. This suggests that standard mixtures should be used in order to obtain consistent, and molar-based, BIT values.

Branched glycerol dialkyl glycerol tetraethers in Arctic lake sediments: Sources and implications for paleothermometry at high latitudes

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are analyzed in different lakes of the Mackenzie (Canadian Arctic) and Kolyma (Siberian Arctic) River basins to evaluate their sources and the implications for brGDGT-based paleothermometry in high-latitude lakes. The comparison of brGDGT distributions and concentrations in the lakes with those in river suspended particulate matter, riverbank sediments, and permafrost material indicates that brGDGTs in Arctic lake sediments have mixed sources. In contrast to global observations, distributional offsets between brGDGTs in Arctic lakes and elsewhere in the catchment are minor, likely due to the extreme seasonality and short window of biological production at high latitudes. Consequently, both soil- and lake-calibrated brGDGT-based temperature proxies return sensible temperature estimates, even though the mean air temperature (MAT) in the Arctic is below the calibration range. The original soil-calibrated MBT-CBT (methylation of branched tetraethers–cyclisation of branched tetraethers) proxy generates MATs similar to those in the studied river basins, whereas using the recently revised MBT′-CBT calibration overestimates MAT. The application of the two global lake calibrations, generating summer air temperatures (SAT) and MAT, respectively, illustrates the influence of seasonality on the production of brGDGTs in lakes, as the latter overestimates actual MAT, whereas the SAT-based lake calibration accounts for this influence and consequently returns more accurate temperatures. Our results in principle support the application of brGDGT-based temperature proxies in high-latitude lakes in order to obtain long-term paleotemperature records for the Arctic, although the calibration and associated transfer function have to be selected with care.

Late Pliocene–Pleistocene expansion of C4 vegetation in semiarid East Asia linked to increased burning

Plants using the C 4 photosynthetic pathway, commonly tropical and subtropical grasses, increased in abundance in East Asia dur- ing the late Cenozoic. Determining the exact timing and likely fac- tors leading to this major vegetation change requires region-specific studies. Here variations in pyrogenic carbon mass accumulation rate (PyC-MAR) and isotope composition (δ 13 C PyC ) from an ~7-m.y.- long depositional sequence from the central Loess Plateau, China, suggest increased biomass burning and an increased contribution to combusted material from C 4 taxa from 2.6 Ma. Changes in the composition of PyC after 0.6 Ma likely reflect the effects of lower temperatures, particularly during glacial periods, and changes in seasonality of precipitation. Increased PyC-MAR without concomi- tant changes in δ 13 C PyC at ca. 0.15 Ma appears to indicate a decou- pling of feedbacks between changes in climate, fire regime, and veg- etation, and may mark the onset of anthropogenic burning in the region. These new data suggest that C 4 taxa were present on the Loess Plateau from at least the late Miocene, rising to prominence at ca. 2.6 Ma following changes in climate and, critically, an increase in biomass fires.

Astronomical age constraints and extinction mechanisms of the Late Triassic Carnian crisis

The geological record contains evidence for numerous pronounced perturbations in the global carbon cycle, some of which are associated with mass extinction. In the Carnian (Late Triassic), evidence from sedimentology and fossil pollen points to a significant change in climate, resulting in biotic turnover, during a time termed the ‘Carnian Pluvial Episode’ (CPE). Evidence from the marine realm suggests a causal relationship between the CPE, a global ‘wet’ period, and the injection of light carbon into the atmosphere. Here we provide the first evidence from a terrestrial stratigraphic succession of at least five significant negative C-isotope excursions (CIE)’s through the CPE recorded in both bulk organic carbon and compound specific plant leaf waxes. Furthermore, construction of a floating astronomical timescale for 1.09 Ma of the Late Triassic, based on the recognition of 405 ka eccentricity cycles in elemental abundance and gamma ray (GR) data, allows for the estimation of a duration for the isotope excursion(s). Source mixing calculations reveal that the observed substantial shift(s) in δ13C was most likely caused by a combination of volcanic emissions, subsequent warming and the dissociation of methane clathrates.

Biomarkers in Lake Van sediments reveal dry conditions in eastern Anatolia during 110.000-10.000 years B.P.

Lipid biomarkers were analyzed in Lake Van sediments covering the last 600 ka, with a focus on the period between 110 and 10 ka, when a broad maximum in pore water salinity as a relict from the past suggests dry conditions. The occurrence and distribution of biomarkers indicative for terrestrial plants (long-chain n-alkane C29), haptophyte algae (methyl alkenones C37) and halophilic archaea (archaeol) all point toward a dry climate in Lake Van region during this time interval. The hydrogen isotopic composition of C29 n-alkanes (δDC29) and C37 alkenones (δDC37) is enriched between MIS 4 and MIS 2, which is interpreted as a decrease in the regional ratio of precipitation to evaporation. Similarly, the low abundance of the acyclic glycerol dialkyl glycerol tetraether GDGT-0 relative to archaeol, quantified by the Archaeol and Caldarchaeol Ecometric (ACE) is assumed to reflect the presence of halophilic euryarchaeota adapted to high salinity water. The climate around Lake Van appears in phase with the Yammouneh basin 800 km southwest and Lake Urmia 250 km southeast of Lake Van over the last two glacial periods. The results highlight the potential of combining ACE, δDC29, and δDC37 for reconstructing salinity changes and regional precipitation to evaporation ratio from lake sediments.

Grain Size Associations of Branched Tetraether Lipids in Soils and Riverbank Sediments: Influence of Hydrodynamic Sorting Processes

We analyzed the abundance and distribution of branched glycerol dialkyl glycerol tetraethers (brGDGTs) in grain size fractions of 7 globally distributed river flank sediments and catchment soils in order to determine if and how the initial soil-brGDGT signature is influenced by hydrodynamic sorting upon entering a river and during subsequent transport from land to sea. BrGDGTs are hypothesized to form associations with high-surface-area fine-grained minerals in soils. Such associations, if maintained during transport, may impart resistance to degradation and promote downstream transport, reducing potential interferences by aquatic brGDGTs. We find that brGDGTs are indeed primarily associated with organic carbon (OC) bound to the clay-silt fraction (<63μm) in both soils and river sediments, and that these associations appear to be maintained during river transport. However, the relative distribution of individual brGDGTs among size fractions is relatively uniform, suggesting that brGDGTs are well mixed in river sediments and that OC-mineral associations are continuously renewed. Consequently, the brGDGT signature finally stored in continental margin sediments appears insensitive to differential particle transport processes. Nevertheless, the lower (upstream) temperature signal generally reflected by brGDGTs in river sediments may also be explained by a contribution of in situ produced brGDGTs leading to an underestimation of reconstructed air temperatures.

Organic carbon isotope and molecular fossil records of vegetation evolution in central Loess Plateau since 450 kyr

Significant uncertainties remain regarding the temporal evolution of natural vegetation during the Quaternary, and drivers of past vegetation change, on the Chinese Loess Plateau (CLP). This study presents analyses of total organic carbon isotopic composition (TOC) and n-alkane ratios (C31/C27) from the Lingtai loess-palaeosol sequence on the central CLP over the last 450 kyr. The results demonstrate that the vegetation in this region comprised a mix of C3 and C4 plants of herb and woody growth-form. C3 plants dominated for most of the last 450 kyr, but this did not lead to extensive forest. C3 woody plants were more abundant in MIS9 (S3 period) and MIS5 (S1 period) during warm and humid climate conditions. Herbs increased in the region since 130 kyr, possibly as a result of increased aridity. On the orbital timescales, there was a reduction of C3 herbal plants in MIS11 (S4) than in MIS12 (L5), and in Holocene than in the last glacial period. Our isotope and n-alkane proxy records are in agreement with Artemisia pollen changes in the region, which is/was the dominant species in this area and varying due to different heat and water conditions between glacial and interglacial periods. Though the climate in MIS1 (S0) was similar to that in MIS11 (S4), a significant increase in woody plants during the Holocene suggests the impact of human activities and ecological effects of changes in fire activity.

Revised calibration of the MBT-CBT paleotemperature proxy

The MBT–CBT proxy for the reconstruction of paleotemperatures and past soil pH is based on the distribution of branched glycerol dialkyl glycerol tetraether (brGDGT) membrane lipids. The Methylation of Branched Tetraether (MBT) and the Cyclisation of Branched Tetraether (CBT) indices were developed to quantify these distributions, and significant empirical relations between these indices and annual mean air temperature (MAT) and/or soil pH were found in a large data set of soils. In this study, we extended this soil dataset to 278 globally distributed surface soils. Of these soils, 26% contains all nine brGDGTs, while in 63% of the soils the seven most common brGDGTs were detected, and the latter were selected for calibration purposes. This resulted in new transfer functions for the reconstruction of pH based on the CBT index: pH = 7.90–1.97 CBT (r = 0.70; RMSE = 0.8; n = 176), as well as for MAT based on the CBT index and methylation index based on the seven most abundant GDGTs (defined as MBT0): MAT = 0.81–5.67 CBT + 31.0 MBT0 (r = 0.59; RMSE = 5.0 C; n = 176). The new transfer function for MAT has a substantially lower correlation coefficient than the original equation (r = 0.77). To investigate possible improvement of the correlation, we used our extended global surface soil dataset to statistically derive the indices that best describe the relations of brGDGT composition with MAT and soil pH. These new indices, however, resulted in only a relatively minor increase in correlation coefficients, while they cannot be explained straightforwardly by physiological mechanisms. The large scatter in the calibration cannot be fully explained by local factors or by seasonality, but MAT for soils from arid regions are generally substantially (up to 20 C) underestimated, suggesting that absolute brGDGT-based temperature records for these areas should be interpreted with caution. The applicability of the new MBT0–CBT calibration function was tested using previously published MBT–CBT-derived paleotemperature records covering the last deglaciation in Central Africa and East Asia, the Eocene–Oligocene boundary and the Paleocene–Eocene thermal maximum. The results show that trends remain similar in all records, but that absolute temperature estimates and the amplitude of temperature changes are lower for most records, and generally in better agreement with independent proxy data. 2012 Elsevier Ltd. All rights reserved. 0016-7037/

Revised calibration of the mbt-cbt paleotemperature proxy based on branched tetraether membrane lipids in surface soils

see front matter 2012 Elsevier Ltd. All rights reserved. http://dx.doi.org/10.1016/j.gca.2012.08.011 ⇑ Corresponding author. Current address: ETH Zürich, Geological Institute, Sonneggstrasse 5, 8092 Zürich, Switzerland. Tel.: +41 44 632 3358. E-mail address: francien.peterse@erdw.ethz.ch (F. Peterse). 216 F. Peterse et al. / Geochimica et Cosmochimica Acta 96 (2012) 215–229