Fraser A. Januchowski-Hartley

Coral Reef Community Composition in the Context of Disturbance History on the Great Barrier Reef, Australia

Much research on coral reefs has documented differential declines in coral and associated organisms. In order to contextualise this general degradation, research on community composition is necessary in the context of varied disturbance histories and the biological processes and physical features thought to retard or promote recovery. We conducted a spatial assessment of coral reef communities across five reefs of the central Great Barrier Reef, Australia, with known disturbance histories, and assessed patterns of coral cover and community composition related to a range of other variables thought to be important for reef dynamics. Two of the reefs had not been extensively disturbed for at least 15 years prior to the surveys. Three of the reefs had been severely impacted by crown-of-thorns starfish outbreaks and coral bleaching approximately a decade before the surveys, from which only one of them was showing signs of recovery based on independent surveys. We incorporated wave exposure (sheltered and exposed) and reef zone (slope, crest and flat) into our design, providing a comprehensive assessment of the spatial patterns in community composition on these reefs. Categorising corals into life history groupings, we document major coral community differences in the unrecovered reefs, compared to the composition and covers found on the undisturbed reefs. The recovered reef, despite having similar coral cover, had a different community composition from the undisturbed reefs, which may indicate slow successional processes, or a different natural community dominance pattern due to hydrology and other oceanographic factors. The variables that best correlated with patterns in the coral community among sites included the density of juvenile corals, herbivore fish biomass, fish species richness and the cover of macroalgae. Given increasing impacts to the Great Barrier Reef, efforts to mitigate local stressors will be imperative to encouraging coral communities to persist into the future.

Relationships between structural complexity, coral traits, and reef fish assemblages

With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia’s Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals—with different traits and life histories—continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

Linking reef ecology to island building: Parrotfish identified as major producers of island-building sediment in the Maldives

Reef islands are unique landforms composed entirely of sediment produced on the surrounding coral reefs. Despite the fundamental importance of these ecological-sedimentary links for island development and future maintenance, reef island sediment production regimes remain poorly quantified. Using census and sedimentary data from Vakkaru island (Maldives), a sand-dominated atoll interior island, we quantify the major sediment-generating habitats, the abundance of sediment producers in these habitats, and the rates and size fractions of sediment generated by different taxa. The estimated annual sediment production is 685,000 kg (or 370 m 3 ), ∼75% of which is produced on the narrow outer reef flat, despite composing only 21% of the total platform area. Approximately 65% of the platform acts solely as a sediment sink. Census data identify parrotfish as the major sediment producers, generating >85% of the 5.7 kg m –2 of new sand-grade sediment produced on the outer reef flat each year. Halimeda (macroalgae) produce a further 10%, most as gravel-grade material. Comparisons between production estimates and sedimentary data indicate that reef ecology and island sedimentology are tightly linked; reef flat and lagoon sediments are dominated by coral and Halimeda , although fine- to medium-grained coral sand is the dominant (∼59%) island constituent. The generation of sediment suitable for maintaining this reef island is thus critically dependent on a narrow zone of high-productivity reef, but most especially on the maintenance of healthy parrotfish populations that can convert reef framework to sand-grade sediment.

Fish wariness is a more sensitive indicator to changes in fishing pressure than abundance, length or biomass

Identifying the most sensitive indicators to changes in fishing pressure is important for accurately detecting impacts. Biomass is thought to be more sensitive than abundance and length, while the wariness of fishes is emerging as a new metric. Periodically harvested closures (PHCs) that involve the opening and closing of an area to fishing are the most common form of fisheries management in the western Pacific. The opening of PHCs to fishing provides a unique opportunity to compare the sensitivity of metrics, such as abundance, length, biomass and wariness, to changes in fishing pressure. Diver-operated stereo video (stereo-DOV) provides data on fish behavior (using a proxy for wariness, minimum approach distance) simultaneous to abundance and length estimates. We assessed the impact of PHC protection and harvesting on the abundance, length, biomass, and wariness of target species using stereo-DOVs. This allowed a comparison of the sensitivity of these metrics to changes in fishing pressure across four PHCs in Fiji, where spearfishing and fish drives are common. Before PHCs were opened to fishing they consistently decreased the wariness of targeted species but were less likely to increase abundance, length, or biomass. Pulse harvesting of PHCs resulted in a rapid increase in the wariness of fishes but inconsistent impacts across the other metrics. Our results suggest that fish wariness is the most sensitive indicator of fishing pressure, followed by biomass, length, and abundance. The collection of behavioral data simultaneously with abundance, length, and biomass estimates using stereo-DOVs offers a cost-effective indicator of protection or rapid increases in fishing pressure. Stereo-DOVs can rapidly provide large amounts of behavioral data from monitoring programs historically focused on estimating abundance and length of fishes, which is not feasible with visual methods.

Drivers and predictions of coral reef carbonate budget trajectories

Climate change is one of the greatest threats to the long-term maintenance of coral-dominated tropical ecosystems, and has received considerable attention over the past two decades. Coral bleaching and associated mortality events, which are predicted to become more frequent and intense, can alter the balance of different elements that are responsible for coral reef growth and maintenance. The geomorphic impacts of coral mass mortality have received relatively little attention, particularly questions concerning temporal recovery of reef carbonate production and the factors that promote resilience of reef growth potential. Here, we track the biological carbonate budgets of inner Seychelles reefs from 1994 to 2014, spanning the 1998 global bleaching event when these reefs lost more than 90% of coral cover. All 21 reefs had positive budgets in 1994, but in 2005 budgets were predominantly negative. By 2014, carbonate budgets on seven reefs were comparable with 1994, but on all reefs where an ecological regime shift to macroalgal dominance occurred, budgets remained negative through 2014. Reefs with higher massive coral cover, lower macroalgae cover and lower excavating parrotfish biomass in 1994 were more likely to have positive budgets post-bleaching. If mortality of corals from the 2016 bleaching event is as severe as that of 1998, our predictions based on past trends would suggest that six of eight reefs with positive budgets in 2014 would still have positive budgets by 2030. Our results highlight that reef accretion and framework maintenance cannot be assumed from the ecological state alone, and that managers should focus on conserving aspects of coral reefs that support resilient carbonate budgets.

Loss of coral reef growth capacity to track future increases in sea level

Sea-level rise (SLR) is predicted to elevate water depths above coral reefs and to increase coastal wave exposure as ecological degradation limits vertical reef growth, but projections lack data on interactions between local rates of reef growth and sea level rise. Here we calculate the vertical growth potential of more than 200 tropical western Atlantic and Indian Ocean reefs, and compare these against recent and projected rates of SLR under different Representative Concentration Pathway (RCP) scenarios. Although many reefs retain accretion rates close to recent SLR trends, few will have the capacity to track SLR projections under RCP4.5 scenarios without sustained ecological recovery, and under RCP8.5 scenarios most reefs are predicted to experience mean water depth increases of more than 0.5u2009m by 2100. Coral cover strongly predicts reef capacity to track SLR, but threshold cover levels that will be necessary to prevent submergence are well above those observed on most reefs. Urgent action is thus needed to mitigate climate, sea-level and future ecological changes in order to limit the magnitude of future reef submergence.Analyses of current coral reef growth rates in the tropical western Atlantic and Indian Ocean show that few reefs will have the capacity to track sea-level rise projections under Representative Concentration Pathway scenarios without sustained ecological recovery.

Demonstrating multiple benefits from periodically harvested fisheries closures

1. Periodically harvested closures (PHCs) are one of the most common forms of fisheries management in Melanesia, demonstrating multiple objectives, including sustaining fish stocks and increasing catch efficiency to support small-scale fisheries. No studies have comprehensively assessed their ability to provide short-term fisheries benefits across the entire harvest regime. n n2. We present a novel analytical framework to guide a meta-analysis and assist future research in conceptualizing and assessing the potential of PHCs to deliver benefits for multiple fisheries-related objectives. n n3. Ten PHCs met our selection criteria and on average, they provided a 48% greater abundance and 92% greater biomass of targeted fishes compared with areas open to fishing prior to being harvested. n n4. This translated into tangible harvest benefits, with fishers removing 21% of the abundance and 49% of the biomass within PHCs, resulting in few post-harvest protection benefits. n n5. When PHCs are larger, closed for longer periods or well enforced, short-term fisheries benefits are improved. However, an increased availability of fish within PHCs leads to greater removal during harvests. n n6. Synthesis and applications. Periodically harvested closures (PHCs) can provide short-term fisheries benefits. Use of the analytical framework presented here will assist in determining long-term fisheries and conservation benefits. We recommend PHCs be closed to fishing for as long as possible, be as large as possible, that compliance be encouraged via community engagement and enforcement, and strict deadlines/goals for harvesting set to prevent overfishing.