Frikkie de Beer

Spondarthritis in the Triassic

Background The evidence of several forms of arthritis has been well documented in the fossil record. However, for pre-Cenozoic vertebrates, especially regarding reptiles, this record is rather scarce. In this work we present a case report of spondarthritis found in a vertebral series that belonged to a carnivorous archosaurian reptile from the Lower Triassic (∼245 million years old) of the South African Karoo. Methodology/Principal Findings Neutron tomography confirmed macroscopic data, revealing the ossification of the entire intervertebral disc space (both annulus fibrosus and nucleus pulposus), which supports the diagnosis of spondarthritis. Conclusions/Significance The presence of spondarthritis in the new specimen represents by far the earliest evidence of any form of arthritis in the fossil record. The present find is nearly 100 million years older than the previous oldest report of this pathology, based on a Late Jurassic dinosaur. Spondarthritis may have indirectly contributed to the death of the animal under study.

Neutron microtomography-based virtual extraction and analysis of a cercopithecoid partial cranium (STS 1039) embedded in a breccia fragment from sterkfontein member 4 (South Africa)

The Plio-Pleistocene karstic sedimentary deposits of Sterkfontein Cave, South Africa, yielded numerous fossil primate specimens embedded in blocks of indurated breccia, including the partial cercopithecoid cranium labelled STS 1039. Because the surrounding matrix masks most of its morphology, the specimen remains taxonomically undetermined. While the use of X-ray microtomography did not allow extracting any structural information about the specimen, we experimented a new investigative technique based on neutron microtomography. Using this innovative approach, we successfully virtually extracted, reconstructed in 3D and quantitatively assessed the preserved dentognathic structural morphology of STS 1039, including details of its postcanine maxillary dentition. Following comparative analyses with a number of Plio-Pleistocene and extant cercopithecoid taxa, we tentatively propose a taxonomic attribution to the taxon Cercopithecoides williamsi. Our experience highlights the remarkable potential of this novel imaging method to extract diagnostic information and to identify the fossil remains embedded in hard breccia from the South African hominin-bearing cave sites.

Morphoarchitectural variation in South African fossil cercopithecoid endocasts

Despite the abundance of well-preserved crania and natural endocasts in the South African Plio-Pleistocene cercopithecoid record, which provide direct information relevant to the evolution of their endocranial characteristics, few studies have attempted to characterize patterns of external brain morphology in this highly successful primate Superfamily. The availability of non-destructive penetrating radiation imaging systems, together with recently developed computer-based analytical tools, allow for high resolution virtual imaging and modeling of the endocranial casts and thus disclose new perspectives in comparative paleoneurology. Here, we use X-ray microtomographic-based 3D virtual imaging and quantitative analyses to investigate the endocranial organization of 14 cercopithecoid specimens from the South African sites of Makapansgat, Sterkfontein, Swartkrans, and Taung. We present the first detailed comparative description of the external neuroanatomies that characterize these Plio-Pleistocene primates. Along with reconstruction of endocranial volumes, we combine a semi-automatic technique for extracting the neocortical sulcal pattern together with a landmark-free surface deformation method to investigate topographic differences in morphostructural organization. Besides providing and comparing for the first time endocranial volume estimates of extinct Plio-Pleistocene South African cercopithecoid taxa, we report additional information regarding the variation in the sulcal pattern of Theropithecus oswaldi subspecies, and notably of the central sulcus, and the neuroanatomical condition of the colobine taxon Cercopithecoides williamsi, suggested to be similar for some aspects to the papionin pattern, and discuss potential phylogenetic and taxonomic implications. Further research in virtual paleoneurology, applied to specimens from a wider geographic area, is needed to clarify the polarity, intensity, and timing of cortical surface evolution in cercopithecoid lineages.

Upper third molar internal structural organization and semicircular canal morphology in Plio-Pleistocene South African cercopithecoids

Despite the abundance of cercopithecoids in the fossil record, especially in South Africa, and the recent development of morphometric approaches, uncertainties regarding the taxonomic identification of isolated cranio-dental specimens remain. Because cercopithecoids, nearly always found in stratigraphic association with hominin remains in Plio-Pleistocene deposits, are considered as sensitive ecological and chronological biomarkers, a significant effort should be made to clarify their palaeobiodiversity by assessing additional reliable morphological diagnostic criteria. Here we test the relevance of both molar crown internal structure and bony labyrinth morphology for discrimination of fossil cercopithecoid species. We use microtomographic-based 3D virtual imaging and quantitative analyses to investigate tooth endostructural organization and inner ear shape in 29 craniodental specimens from the South African sites of Kromdraai, Makapansgat, Sterkfontein and Swartkrans and provide the first detailed description of the internal structural condition characterizing this Plio-Pleistocene primate assemblage. Our preliminary results show that enamel-dentine junction morphology could be informative for discriminating highly autapomorphic taxa such as Theropithecus, while semicircular canal shape is tentatively proposed as an efficient criterion for diagnosing Dinopithecus ingens. Further research in virtual paleoprimatology may contribute to the identification of unassigned isolated fossil remains and shed new light on the internal craniodental morphology of extinct primate taxa.

An Analysis of the Slow Compression Breakage of Coal Using Microfocus X-Ray Computed Tomography

The degradation of coal and the production of coal fines during handling and transport is a serious problem in processes that depend on closely sized large particles. To minimize the production of fines, a fundamental understanding of coal breakage is required, so, to clarify the complex nature of coal breakage, a series of experiments was conducted to determine the influence of the internal physical coal structures on compression breakage characteristics. The structures investigated are the cleat and layered structure of coal and the mineral inclusions. Samples of uniform size and shape were prepared from a large block of South African Waterberg coal. The samples were analyzed nondestructively using microfocus x-ray computed tomography then wrapped in cling film and mechanically compressed while the pressure applied was measured. The virtual three-dimensional volume tomograms of the initial sample and the progeny were compared and the changes qualitatively analyzed. Conclusions were drawn as to where the fatal cracks initialized and how the cracks propagated. Particle-size distributions were done to quantify the extent of breakage versus the breakage strength of the sample. It was found that, of all the internal structures, the inherent crack distribution has the biggest influence on breakage and breakage patterns of coal.

Spontaneous Imbibition Studies of Australian Reservoir Rocks With Neutron Radiography

Spontaneous imbibition experiments were carried out on three core samples from the Mardie Greensand and one core sample of Barrow Group sandstone from the Australian North West Shelf. Water uptake into the samples, which were initially airsaturated, was measured by dynamic neutron radiography. The observed data were interpreted by (1) the linear diffusionequation approximation for fluid flow and (2) the Li and Horne model. Both these models were consistent with the observed data, and have similar consequences. The linear diffusion-equation model suggests that a constant diffusion parameter, D w , can adequately describe the observed spontaneous imbibition of water into these samples, under ambient temperature and pressure, throughout most of the imbibition process. The Li and Horne model suggests that (1) the effective water permeability of the sample and (2) water permeability times the capillary pressure gradient within the sample are approximately constant through most of the imbibition process, during these experiments. The combined conclusion of these interpretational methods implies that the water permeability and the capillary pressure-water saturation gradient in these samples are constant throughout most of the imbibition process, under ambient temperature and pressure conditions.

Quantification of cement hydration through neutron radiography with scatter rejection

The unique capabilities of neutrons to penetrate materials opaque to X-rays and at the same time to interact with hydrogen make neutron radiography a technique of choice for the nondestructive quantification of hydrogen-containing substances. However, scattering rather than absorption of neutrons by hydrogen atoms can substantially decrease the accuracy of this quantification. Various post-experiment data processing techniques were developed to correct and mitigate the effects of scattering. A complementary “hardware” solution is to simply eliminate the detrimental scattering component from the detected signal through the use of neutron collimators. Compact polycapillary collimators, merely a few millimeters thick, enable accurate, high spatial resolution quantification for a wide range of neutron scattering materials. This paper demonstrates the improved quantification of water absorption with sub- 100 μm spatial resolution in 1 ×1×2 cm3 Portland cement samples. A compact polycapillary neutron collimator (2 mm thick) was used for scatter rejection in our experiments. The results of these measurements indicate that such devices can be attractive for studies where samples must be placed in quite close proximity (e.g., only a few centimeters or closer) from the neutron detector active surface.

Intra-individual metameric variation expressed at the enamel-dentine junction of lower post-canine dentition of South African fossil hominins and modern humans

OBJECTIVES The aim of this study is to compare the degree and patterning of inter- and intra-individual metameric variation in South African australopiths, early Homo and modern humans. Metameric variation likely reflects developmental and taxonomical issues, and could also be used to infer ecological and functional adaptations. However, its patterning along the early hominin postcanine dentition, particularly among South African fossil hominins, remains unexplored. MATERIALS AND METHODS Using microfocus X-ray computed tomography (µXCT) and geometric morphometric tools, we studied the enamel-dentine junction (EDJ) morphology and we investigated the intra- and inter-individual EDJ metameric variation among eight australopiths and two early Homo specimens from South Africa, as well as 32 modern humans. RESULTS Along post-canine dentition, shape changes between metameres represented by relative positions and height of dentine horns, outlines of the EDJ occlusal table are reported in modern and fossil taxa. Comparisons of EDJ mean shapes and multivariate analyses reveal substantial variation in the direction and magnitude of metameric shape changes among taxa, but some common trends can be found. In modern humans, both the direction and magnitude of metameric shape change show increased variability in M2 -M3 compared to M1 -M2 . Fossil specimens are clustered together showing similar magnitudes of shape change. Along M2 -M3 , the lengths of their metameric vectors are not as variable as those of modern humans, but they display considerable variability in the direction of shape change. CONCLUSION The distalward increase of metameric variation along the modern human molar row is consistent with the odontogenetic models of molar row structure (inhibitory cascade model). Though much remains to be tested, the variable trends and magnitudes in metamerism in fossil hominins reported here, together with differences in the scale of shape change between modern humans and fossil hominins may provide valuable information regarding functional morphology and developmental processes in fossil species.

The Use of 3D X-Ray Computed Tomography for Gold Location in Exploration Drill Cores

Three-dimensional computed tomography (3DCT) is a non-destructive characterisation technique that was applied to the study of gold-bearing ore from the Witwatersrand Deposit, South Africa. The ability to pinpoint gold occurrence prior to downstream comminution and leaching would potentially reduce processing costs. The aim of the study was therefore to determine to what extent gold, typically fine-grained in occurrence, could be identified in situ. Two gold-bearing drill core pieces were investigated using 1-mm focal spot X-ray tomography and micro-focus X-ray tomography (μXCT). Using the derived data, the cores were physically cut and polished for examination by conventional automated scanning electron microscopy (SEM) to detect gold grains. The SEM results were then compared against the μXCT data. Gold was, to an extent, located by μXCT and validated against SEM data. These first findings suggest that areas rich in gold can be pinpointed by 3DCT prior to conventional assessment, hence potentially reducing processing costs.

The endocranial shape of Australopithecus africanus: surface analysis of the endocasts of Sts 5 and Sts 60

Assessment of global endocranial morphology and regional neuroanatomical changes in early hominins is critical for the reconstruction of evolutionary trajectories of cerebral regions in the human lineage. Early evidence of cortical reorganization in specific local areas (e.g. visual cortex, inferior frontal gyrus) is perceptible in the non‐human South African hominin fossil record. However, to date, little information is available regarding potential global changes in the early hominin brain. The introduction of non‐invasive imaging techniques opens up new perspectives for the study of hominin brain evolution. In this context, our primary aim in this study is to explore the organization of the Australopithecus africanus endocasts, and highlight the nature and extent of the differences distinguishing A. africanus from the extant hominids at both local and global scales. By means of X‐ray‐based imaging techniques, we investigate two A. africanus specimens from Sterkfontein Member 4, catalogued as Sts 5 and Sts 60, respectively a complete cranium and a partial cranial endocast. Endocrania were virtually reconstructed and compared by using a landmark‐free registration method based on smooth and invertible surface deformation. Both local and global information provided by our deformation‐based approach are used to perform statistical analyses and topological mapping of inter‐specific variation. Statistical analyses indicate that the endocranial shape of Sts 5 and Sts 60 approximates the Pan condition. Furthermore, our study reveals substantial differences with respect to the extant human condition, particularly in the parietal regions. Compared with Pan, the endocranial shape of the fossil specimens differs in the anterior part of the frontal gyri.