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Dive into the research topics where Fumika N. Hamada is active.

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Featured researches published by Fumika N. Hamada.


FEBS Journal | 2006

Sumoylation of a meiosis-specific RecA homolog, Lim15/Dmc1, via interaction with the small ubiquitin- related modifier (SUMO)-conjugating enzyme Ubc9

Akiyo Koshiyama; Fumika N. Hamada; Satoshi H. Namekawa; Kazuki Iwabata; Hiroko Sugawara; Aiko Sakamoto; Takashi Ishizaki; Kengo Sakaguchi

Sumoylation is a post‐translational modification system that covalently attaches the small ubiquitin‐related modifier (SUMO) to target proteins. Ubc9 is required as the E2‐type enzyme for SUMO‐1 conjugation to targets. Here, we show that Ubc9 interacts with the meiosis‐specific RecA homolog, Lim15/Dmc1 in the basidiomycete Coprinus cinereus (CcLim15), and mediates sumoylation of CcLim15 during meiosis. In vitro protein–protein interaction assays revealed that CcUbc9 interacts with CcLim15 and binds to the C‐terminus (amino acids 105–347) of CcLim15, which includes the ATPase domain. Immunocytochemistry demonstrates that CcUbc9 and CcLim15 colocalize in the nuclei from the leptotene stage to the early pachytene stage during meiotic prophase I. Coimmunoprecipitation experiments indicate that CcUbc9 interacts with CcLim15 in vivo during meiotic prophase I. Furthermore, we show that CcLim15 is a target protein of sumoylation both in vivo and in vitro, and identify the C‐terminus (amino acids 105–347) of CcLim15 as the site of sumoylation in vitro. These results suggest that sumoylation is a candidate modulator of meiotic recombination via interaction between Ubc9 and Lim15/Dmc1.


Nucleic Acids Research | 2005

DNA topoisomerase II interacts with Lim15/Dmc1 in meiosis

Kazuki Iwabata; Akiyo Koshiyama; Taiki Yamaguchi; Hiroko Sugawara; Fumika N. Hamada; Satoshi H. Namekawa; Satomi Ishii; Takashi Ishizaki; Hiroyuki Chiku; Takayuki Nara; Kengo Sakaguchi

Lim15/Dmc1 is a meiosis specific RecA-like protein. Here we propose its participation in meiotic chromosome pairing-related events along with DNA topoisomerase II. Analysis of protein–protein interactions using in vitro binding assays provided evidence that Coprinus cinereus DNA topoisomerase II (CcTopII) specifically interacts with C.cinereus Lim15/Dmc1 (CcLim15). Co-immunoprecipitation experiments also indicated that the CcLim15 protein interacts with CcTopII in vivo. Furthermore, a significant proportion of CcLim15 and CcTopII could be shown to co-localize on chromosomes from the leptotene to the zygotene stage. Interestingly, CcLim15 can potently activate the relaxation/catenation activity of CcTopII in vitro, and CcTopII suppresses CcLim15-dependent strand transfer activity. On the other hand, while enhancement of CcLim15s DNA-dependent ATPase activity by CcTopII was found in vitro, the same enzyme activity of CcTopII was inhibited by adding CcLim15. The interaction of CcLim15 and CcTopII may facilitate pairing of homologous chromosomes.


Biochimica et Biophysica Acta | 2003

Coprinus cinereus DNA ligase I during meiotic development.

Satoshi H. Namekawa; Fumika N. Hamada; Satomi Ishii; Yosuke Ichijima; Taiki Yamaguchi; Takayuki Nara; Seisuke Kimura; Takashi Ishizaki; Kazuki Iwabata; Akiyo Koshiyama; Hirobumi Teraoka; Kengo Sakaguchi

DNA ligase I is thought to be essential for DNA replication, repair and recombination, at least in the mitotic cell cycle, but whether this is also the case during the meiotic cell cycle is still obscure. To investigate the role of DNA ligase I during the meiotic cell cycle, we cloned the Coprinus cinereus DNA ligase I cDNA (CcLIG1). Northern blotting analysis indicated that CcLIG1 is expressed not only in the premeiotic S-phase but also during the meiotic cell cycle itself. Especially, intense signals were observed in the leptotene and zygotene stages. Western blotting analysis indicated that CcLIG1 is expressed through the meiotic cell cycle and immunofluorescence also showed CcLIG1 protein staining in meiotic cells. Interestingly, the patterns was similar to that for the C. cinereus proliferating cell nuclear antigen gene (CcPCNA) and immunoprecipitation analysis suggested that CcPCNA binds to CcLIG1 in crude extracts of meiotic prophase I tissues. Based on these observations, relationships and roles during the meiotic cell cycle are discussed.


Chromosoma | 2009

Coprinus cinereus Mer3 is required for synaptonemal complex formation during meiosis

Hiroko Sugawara; Kazuki Iwabata; Akiyo Koshiyama; Takuro Yanai; Yoko Daikuhara; Satoshi H. Namekawa; Fumika N. Hamada; Kengo Sakaguchi

Mer3 is an evolutionarily conserved DNA helicase that has crucial roles in meiotic recombination and crossover formation. We have identified the MER3 homolog in Coprinus cinereus (Ccmer3) and show that it is expressed in zygotene and pachytene meiocytes. Immunostaining analysis indicated that CcMer3 was localized on chromosomes at zygotene and pachytene and CcMer3 foci were more frequent on paired than unpaired chromosomes. We generated a C. cinereus mer3 mutant (#1) and found that it showed abnormal meiosis progression and underwent apoptosis after prophase I. Basidiospore production in #1 was reduced to 0.8% of the wild-type level; the spores showed slower germination at 25°C but were similar to the wild type at 37°C. Electron microscopic analysis of chromosome spreads revealed that axial elements were formed in the mutant but that synapsis was defective, resulting in a reduction in spore production. Our results demonstrate that CcMer3 is required for synaptonemal complex formation after axial elements align and is thus essential for homologous synapsis.


FEBS Journal | 2008

Interaction between Lim15/Dmc1 and the homologue of the large subunit of CAF-1: a molecular link between recombination and chromatin assembly during meiosis.

Satomi Ishii; Akiyo Koshiyama; Fumika N. Hamada; Takayuki Nara; Kazuki Iwabata; Kengo Sakaguchi; Satoshi H. Namekawa

In eukaryotes, meiosis leads to genetically variable gametes through recombination between homologous chromosomes of maternal and paternal origin. Chromatin organization following meiotic recombination is critical to ensure the correct segregation of homologous chromosomes into gametes. However, the mechanism of chromatin organization after meiotic recombination is unknown. In this study we report that the meiosis‐specific recombinase Lim15/Dmc1 interacts with the homologue of the largest subunit of chromatin assembly factor 1 (CAF‐1) in the basidiomycete Coprinopsis cinerea (Coprinus cinereus). Using C. cinerea LIM15/DMC1 (CcLIM15) as the bait in a yeast two‐hybrid screen, we have isolated the C. cinerea homologue of Cac1, the largest subunit of CAF‐1 in Saccharomyces cerevisiae, and named it C. cinerea Cac1‐like (CcCac1L). Two‐hybrid assays confirmed that CcCac1L binds CcLim15 in vivo. β‐Galactosidase assays revealed that the N‐terminus of CcCac1L preferentially interacts with CcLim15. Co‐immunoprecipitation experiments showed that these proteins also interact in the crude extract of meiotic cells. Furthermore, we demonstrate that, during meiosis, CcCac1L interacts with proliferating cell nuclear antigen (PCNA), a component of the DNA synthesis machinery recently reported as an interacting partner of Lim15/Dmc1. Taken together, these results suggest a novel role of the CAF‐1–PCNA complex in meiotic events. We propose that the CAF‐1–PCNA complex modulates chromatin assembly following meiotic recombination.


Microbiology | 2005

Knockdown of LIM15/DMC1 in the mushroom Coprinus cinereus by double-stranded RNA-mediated gene silencing.

Satoshi H. Namekawa; Kazuki Iwabata; Hiroko Sugawara; Fumika N. Hamada; Akiyo Koshiyama; Hiroyuki Chiku; Takashi Kamada; Kengo Sakaguchi


FEBS Journal | 2002

Leucine aminopeptidase during meiotic development

Takashi Ishizaki; Aki Tosaka; Takayuki Nara; Narumichi Aoshima; Satoshi H. Namekawa; Kei Watanabe; Fumika N. Hamada; Akira Omori; Kengo Sakaguchi


FEBS Journal | 2003

Dissociation of DNA polymerase α‐primase complex during meiosis in Coprinus cinereus

Satoshi H. Namekawa; Fumika N. Hamada; Tomoyuki Sawado; Satomi Ishii; Takayuki Nara; Takashi Ishizaki; Takashi Ohuchi; Takao Arai; Kengo Sakaguchi


Microbiology | 2003

DNA ligase IV from a basidiomycete, Coprinus cinereus, and its expression during meiosis.

Satoshi H. Namekawa; Yosuke Ichijima; Fumika N. Hamada; Nobuyuki Kasai; Kazuki Iwabata; Takayuki Nara; Hirobumi Teraoka; Fumio Sugawara; Kengo Sakaguchi


Biochemical and Biophysical Research Communications | 2007

Proliferating cell nuclear antigen (PCNA) interacts with a meiosis-specific RecA homologues, Lim15/Dmc1, but does not stimulate its strand transfer activity

Fumika N. Hamada; Akiyo Koshiyama; Satoshi H. Namekawa; Satomi Ishii; Kazuki Iwabata; Hiroko Sugawara; Takayuki Nara; Kengo Sakaguchi; Tomoyuki Sawado

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Satoshi H. Namekawa

Cincinnati Children's Hospital Medical Center

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Kengo Sakaguchi

Tokyo University of Science

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Kazuki Iwabata

Tokyo University of Science

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Takayuki Nara

Tokyo University of Science

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Akiyo Koshiyama

Tokyo University of Science

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Satomi Ishii

Tokyo University of Science

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Takashi Ishizaki

Tokyo University of Science

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Hiroko Sugawara

Tokyo University of Science

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Taiki Yamaguchi

Tokyo University of Science

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Tomoyuki Sawado

Tokyo University of Science

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