G. N. Ten

Interpretation of vibrational IR spectrum of uracil using anharmonic calculation of frequencies and intensities in second-order perturbation theory

The anharmonic frequencies of fundamental vibrations, overtones, and combination vibrations, as well as the intensities of absorption bands in the IR spectrum of uracil, are calculated. The anharmonic quartic force field and the third-order dipole moment surface calculated by the DFT quantum-mechanical method (B3LYP/6-31+G(d,p)) are taken as the initial parameters. The anharmonic frequencies and intensities of vibrations are determined using the second-order perturbation theory in the form of contact transformations. Multiple Fermi resonances and polyads are determined by the diagonalization of a small interaction matrix of vibrations of different types (fundamental, combination, and overtone frequencies). The total experimental IR spectrum of matrix-isolated uracil is interpreted. It is shown that the used method of calculating anharmonic frequencies and intensities can form a basis for anharmonic calculations of vibrations of moderate molecules.

Quantum-mechanical calculation of the intensity distribution in resonance raman spectra of thiosubstituted derivatives of uracil

A quantum-mechanical calculation of the intensity distribution in the resonance Raman (RR) spectra of 2-thiouracil and 4-thiouracil is carried out for exciting laser radiation at 300, 257, and 248 nm. It is shown that, for satisfactory agreement between the calculated results and the experimental data, it is necessary to take into account in the calculations of the relative intensities of lines the Herzberg-Teller effect and the contribution from excited electronic states adjacent to the resonance state. The general and specific features of the intensity distribution in the RR spectra of uracil and its thiosubstituted derivatives are compared and discussed.

Calculation and Interpretation of the Absorption and Fluorescence Spectra of Indole in the Isolated State and Aqueous Solution

We have calculated the vibronic absorption and fluorescence spectra of the first (1Lb) and second (1La) electronic transitions of indole in the isolated state and aqueous solution. The vibrational structure of the absorption and fluorescence spectra has been interpreted. The influence of the aqueous solution on the vibronic spectra has been shown.

Determination of the tautomeric composition of adenine in the gas phase by vibrational spectroscopy methods: I. Analysis of IR spectra

The tautomeric composition of isolated adenine has been analyzed using computational IR spectroscopy. A comparison with experimental data has demonstrated that, in addition to adenine-N9H, which dominates in the quantitative content, two more tautomers that have the N9H imino and N7H amino forms exist in the isolated state and in the gas phase.

Determination of the tautomeric composition of adenine in the gas phase by vibrational spectroscopy methods: II. Analysis of resonance Raman spectra

The resonance Raman spectra of adenine in the gas phase under excitation with laser radiation at wavelengths of 266, 218, and 200 nm have been investigated experimentally. The quantum-mechanical calculations of the intensity distribution in the resonance Raman spectra of three adenine tautomers are performed in the Herzberg-Teller approximation with the inclusion of the Duschinsky and frequency effects. Conclusions regarding the tautomeric composition of adenine in the gas phase are drawn from comparison of the results of quantum-mechanical calculations with experimental data.

Analysis of Electronic-Vibrational Spectra of Uracil, Thymine, and Cytosine

A theoretical analysis of absorption spectra of uracil, thymine, and cytosine—nucleic acid bases— is carried out. Structural dynamic models of these molecules in their electronically excited states are constructed. On the basis of the calculated vibrational structure of the electronic spectra, different tautomeric forms of these molecules are determined. The possibility of modeling the influence of hydrogen bonds on the electronic-vibrational spectra is shown.

Calculation and interpretation of vibronic absorption and fluorescence spectra of the first electronic nπ* transitions of pyridine and pyrimidine

We have calculated vibronic spectra of the first electronic nπ* transitions of pyridine and pyrimidine in the isolated state using the DFT method in the Franck-Condon approximation. Vibrational spectra for the ground and excited states have been calculated in the anharmonic approximation, which allowed us to refine the assignment of normal vibrations of pyridine and pyrimidine. We have done a complete interpretation of the vibrational structure of the absorption and fluorescence spectra of pyridine and pyrimidine. It has been shown that Fermi resonances between fundamental and combination vibrations and overtones 12 and 16b + 4, 6a and 2 × 16b affect the formation of the vibrational structure of electronic spectra of pyrimidine. Good agreement between calculated and experimental spectra confirms the correctness of the models of the two molecules in their ground and excited states, which makes it possible to use the models in further investigations of various properties of these molecules in electronically excited states, e.g., tautomerism of pyrimidine bases of nucleic acids.

Interpretation of the vibrational spectra of polycrystalline adenine

The infrared and Raman spectra of the tetramer of the adenine N9H are calculated and analyzed. The vibrational spectra of polycrystalline adenine are interpreted. It is demonstrated that the method for calculating the vibrational spectra of molecular complexes formed by hydrogen bonds can be used for interpreting the vibrational spectra of polyatomic molecules in the solid state.

Theoretical analysis of the tautomer composition of cytosine isolated in an Ar matrix

The IR spectra of cytosine and its five tautomers are calculated and analyzed in the B3LYP/6-31G(d) approximation. Comparison of calculated and experimental spectra showed that, in the isolated state, there occur four tautomeric forms, cis, trans, trans-amino-hydroxy, and cis-imino-oxo, as well as one canonical form of cytosine.

Quantum-mechanical calculation of the intensity distribution in resonance Raman spectra of cytosine

A quantum-mechanical calculation of the relative intensities of lines in resonance Raman (RR) spectra of cytosine excited by laser radiation at 266, 218, and 200 nm was performed in different approximations of the vibronic theory. Both the Herzberg-Teller effect and the contribution from electronic states located close to the resonance state are shown to play a significant role in determining the relative intensities of lines. A satisfactory agreement between the calculated results and experimental data is obtained. The specific features of the intensity distribution in the RR spectra of cytosine are compared with those in the spectra of the previously studied thymine and uracil, which have a similar structure and also belong to the simplest nucleic acid bases.