Gerald J. Niemi

Overview of case studies on recovery of aquatic systems from disturbance

An extensive review of the published literature identified more than 150 case studies in which some aspect of resilience in freshwater systems was reported. Approximately 79% of systems studied were lotic and the remainder lentic. Most of the stressor types were chemical with DDT (N=29) and rotenone (N=15) the most common. The most common nonchemical stressors were logging activity (N=16), flooding (N=8), dredging (N=3), and drought (N=7).The variety of endpoints to which recovery could be measured ranged from sparse data for phytoplankton (N=13), periphyton (N=6), and macrophytes (N=8) to relatively more data for fish (N=412) and macroinvertebrates (N=698). Unfortunately the same characteristics were rarely measured consistently among sites. For example, with respect to fish, more than 30 different species were studied and recovery was measured in many ways, most commonly on the basis of: (1) first reappearance of the species, (2) return time of predisturbance densities, and (3) return time of predisturbance average individual size. Based on these criteria, all systems in these studies seem to be resilient to most disturbances with most recovery times being less than three years. Exceptions included when (1) the disturbance resulted in physical alteration of the existing habitat, (2) residual pollutants remained in the system, or (3) the system was isolated and recolonization was suppressed.

Recovery of Temperate-Stream Fish Communities from Disturbance: A Review of Case Studies and Synthesis of Theory

To evaluate the relative effect of autecologic factors, site-specific factors, disturbance characteristics, and community structure on the recovery of temperate-stream fish communities, we reviewed case histories for 49 sites and recorded data on 411 recovery end points. Most data were derived from studies of low-gradient third- or fourth-order temperate streams located in forested or agricultural watersheds. Species composition, species richness, and total density all recovered within one year for over 70% of systems studied. Lotic fish communities were not resilient to press disturbances (e.g., mining, logging, channelization) in the absence of mitigation efforts (recovery time >5 to >52 yr) and in these cases recovery was limited by habitat quality. Following pulse disturbances, autecological factors, site-specific factors, and disturbance-specific factors all affected rates of recovery. Centrarchids and minnows were most resilient to disturbance, while salmonid populations were least resilient of all families considered. Species within rock-substrate/nest-spawning guilds required significantly longer time periods to either recolonize or reestablish predisturbance population densities than did species within other reproductive guilds. Recovery was enhanced by the presence of refugia but was delayed by barriers to migration, especially when source populations for recolonization were relatively distant. Median population recovery times for systems in which disturbances occurred during or immediately prior to spawning were significantly less than median recovery times for systems in which disturbances occurred immediately after spawning. There was little evidence for the influence of biotic interactions on recovery rates.

The cumulative effect of wetlands on stream water quality and quantity. A landscape approach

A method was developed to evaluate the cumulative effect of wetland mosaics in the landscape on stream water quality and quantity in the nine-county region surrounding Minneapolis—St. Paul, Minnesota. A Geographic Information System (GIS) was used to record and measure 33 watershed variables derived from historical aerial photos. These watershed variables were then reduced to eight principal components which explained 86% of the variance. Relationships between stream water quality variables and the three wetland-related principal components were explored through stepwise multiple regression analysis. The proximity of wetlands to the sampling station was related to principal component two, which was associated with decreased annual concentrations of inorganic suspended solids, fecal coliform, nitrates, specific conductivity, flow-weighted NH4 flow-weighted total P, and a decreased proportion of phosphorus in dissolved form(p < 0.05). Wetland extent was related to decreased specific conductivity, chloride, and lead concentrations. The wetland-related principal components were also associated with the seasonal export of organic matter, organic nitrogen, and orthophosphate. Relationships between water quality and wetlands components were different for time-weighted averages as compared to flow-weighted averages. This suggests that wetlands were more effective in removing suspended solids, total phosphorus, and ammonia during high flow periods but were more effective in removing nitrates during low flow periods.

Determining structural similarity of chemicals using graph-theoretic indices

Abstract Ninety (90) graph-theoretic indices were calculated for a diverse set of 3692 chemicals to test the efficacy of using graph-theoretic indices in determining similarity of chemicals in a large, diverse data base of structures. Principal component analysis was used to reduce the 90-dimensional space to a 10-dimensional subspace which explains 93% of the variance. Distance between chemicals in this 10-dimensional space was used to measure similarity. To test this approach, ten chemicals were chosen at random from the set of 3692 chemicals and the five nearest neighbors for each of these ten target chemicals were determined. The results show that this measure of similarity reflects intuitive notions of chemical similarity.

Lack of edge effect in nesting success of breeding birds in managed forest landscapes

We assessed avian nesting success in two forested landscapes (Chippewa and Superior National Forests) in northern Minnesota. We found 311 nests of 33 species in the Chippewa study area and 36 nests of 13 species in the Superior study area. Each nest was classified into one of three general habitat types: open (clearcuts with vegetation 8 m high). Mayfield nesting success for the most common species in the Chippewa (all of which had open-cup nests) averaged 0.43. Nesting success ranged from 0.18 for the Red-eyed Vireo (Vireo olivaceus) to 0.76 for the Yellow Warbler (Dendroica petechia). Nest predation was the most common mortality factor, causing 89.2% of known failures. Nest predation among ground-nesting birds was signifi- cantly higher in the Chippewa (55%) than in the Superior (15%) study area (P = 0.038). Nest predation was highest (P = 0.015) in the forest (62.2%) and lowest in open (42.2%) and regenerating (47.4%) habitat types. Only canopy cover explained differences in nesting suc- cess, which was higher in more open canopies. Distance to forest edge, nest height, and nest concealment had no effect on nesting success in both forested and open habitats. Brown- headed Cowbird (Molothrus ater) parasitism was low (9.6% in the Chippewa study area), and parasitized nests were relatively unsuccessful (only 1.7% yielded cowbird fledglings). Neither cowbirds nor nest parasitism was observed in the Superior study area. Received 30 May 1995, accepted 20 August 1995.

Rationale for a new generation of indicators for coastal waters.

More than half the world’s human population lives within 100 km of the coast, and that number is expected to increase by 25% over the next two decades. Consequently, coastal ecosystems are at serious risk. Larger coastal populations and increasing development have led to increased loading of toxic substances, nutrients and pathogens with subsequent algal blooms, hypoxia, beach closures, and damage to coastal fisheries. Recent climate change has led to the rise in sea level with loss of coastal wetlands and saltwater intrusion into coastal aquifers. Coastal resources have traditionally been monitored on a stressor-by-stressor basis such as for nutrient loading or dissolved oxygen. To fully measure the complexities of coastal systems, we must develop a new set of ecologic indicators that span the realm of biological organization from genetic markers to entire ecosystems and are broadly applicable across geographic regions while integrating stressor types. We briefly review recent developments in ecologic indicators and emphasize the need for improvements in understanding of stress–response relationships, contributions of multiple stressors, assessments over different spatial and temporal scales, and reference conditions. We provide two examples of ecologic indicators that can improve our understanding of these inherent problems: a) the use of photopigments as indicators of the interactive effects of nutrients and hydrology, and b) biological community approaches that use multiple taxa to detect effects on ecosystem structure and function. These indicators are essential to measure the condition of coastal resources, to diagnose stressors, to communicate change to the public, and ultimately to protect human health and the quality of the coastal environment.

A critical analysis on the use of indicator species in management

We examined the habitat distributions of management indicator and sensitive species (MIS), as defined by the U.S. Forest Service within the Chequamegon National Forest (CNF) of northern Wisconsin and whether other bird species were positively associated with these MIS. We addressed these associations with 2 relatively large databases, annual breeding bird counts of 92 line transect segments gathered from 1986 to 1992 and counts of 122 Forest Stands gathered in 1992-1993. Of 25 MIS identified by the CNF, only 7 species were abundant enough for analyses. The other species were either too rare within the CNF or the censusing methods were not compatible with their life history. Only 2 of the MIS had nonrandom distributions associated with specific habitat types and warranted consideration as indicators. The yellow-bellied flycatcher (Empidonax flaviventris) was found primarily in lowland coniferous habitats, while the pine warbler (Dendroica pinus) was found primarily in upland coniferous habitats, especially pine. Although many positive species associations were found for most of the MIS, many inconsistencies among the 2 datasets also were identified. Most species responded to habitat attributes that satisfy their needs for survival and these autecological responses likely led to inconsistent patterns of species associations for most of the MIS. The lack of consistent patterns among most MIS casts doubt on the ability to use a few species as indicators for the well-being of many other species, especially for those that are uncommon and difficult to monitor. Developing more comprehensive techniques that improve habitat classifications and combine monitoring of trends in habitat and birds within those habitats likely will prove more fruitful than focusing on a few representative species.

Uptake of planar polychlorinated biphenyls and 2,3,7,8-substituted polychlorinated dibenzofurans and dibenzo-p-dioxins by birds nesting in the lower fox river and Green Bay, Wisconsin, USA

The uptake of persistent polychlorinated hydrocarbons (PCHs) by four avian species was investigated at upper trophic levels of two aquatic food chains of the lower Fox River and Green Bay, Wisconsin. Accumulation of total and specific planar polychlorinated biphenyls (PCBs), polychlorinated dibenzofurans (PCDFs), polychlorinated dibenzo-p-dioxin (PCDDs), and H411E rat hepatoma cell bioassay-derived 2,37,8-tetrachlorodibenzop-dioxin equivalents (TCDD-EQ) was evaluated in Forsters tern (Sterna forsteri) and common tern (Sterna hirundo) chicks, and in tree swallow (Tachycineta bicolor) and red-winged blackbird (Agelaius phoeniceus) nestlings from colonies nesting in several locations within the watershed. Concentrations of the PCHs were greatest in eggs and chicks of the two tern species, less in the tree swallows and least in the red-winged blackbirds. Young of all four species accumulated total PCBs, PCB congeners 77, 105, 126, and 169, and TCDD-EQ. The young birds also accumulated small concentrations of several 2,3,7,8-sbustituted PCDF and PCDD congeners. Uptake rates for certain of the PCHs for the Forsters tern chicks were: 15 μg/day for total PCBs, 70, 200, 6.5, and 0.14 ng/day for PCB congeners 77, 105, 126, and 169, respectively, and 270 μg/day for TCDD-EQ. Principal components analysis revealed that the patterns of PCH concentrations in the samples were influenced by species of bird, their age (or length of exposure) and nesting location. Collectively, our findings demonstrate that exposure of avian species to contaminants derived from aquatic food chains can be characterized and quantified for the purposes of ecological risk assessment.

Predicting properties of molecules using graph invariants

Topological indices (TIs) have been used to study structure-activity relationships (SAR) with respect to the physical, chemical, and biological properties of congeneric sets of molecules. Since there are many TIs and many are correlated, it is important that we identify redundancies and extract useful information from TIs into a smaller number of parameters. Moreover, it is important to determine if TIs, or parameters derived from TIs, can be used for global SAR models of diverse sets of chemicals. We calculated seventy-one TIs for three groups of molecules of increasing complexity and diversity: (a) 74 alkanes, (b) 29 alkylbenzenes, and (c) 37 polycyclic aromatic hydrocarbons (PAHs). Principal components analysis (PCA) revealed that a few principal components (PCs) could extract most of the information encoded by the seventy-one TIs. The structural basis of the first few PCs could be derived from their pattern of correlation with individual TIs. For the three sets of molecules, viz. alkanes, alkylbenzenes and PAHs, PCs were able to predict the boiling points reasonably well. Also, for the combined set of 140 chemicals consisting of the alkanes, alkylbenzenes and PAHs, the derived PCs were not as effective in predicting properties as in the case of individual classes of compounds.

Ecological Sustainability of Birds in Boreal Forests

We review characteristics of birds in boreal forests in the context of their ecological sustainability under both natural and anthropogenic disturbances. We identify the underlying ecological factors associated with boreal bird populations and their variability, review the interactions between boreal bird populations and disturbance, and describe some tools on how boreal bird populations may be conserved in the future. The boreal system has historically been an area with extensive disturbance such as fire, insect outbreaks, and wind. In addition, the boreal system is vulnerable to global climate change as well as increasing pressure on forest and water resources. Current knowledge indicates that birds play an important role in boreal forests, and sustaining these populations affords many benefits to the health of boreal forests. Many issues must be approached with caution, including the lack of knowledge on our ability to mimic natural disturbance regimes with management, our lack of understanding on fragmentation due to logging activity, which is different from permanent conversion to other land uses such as agriculture or residential area, and our lack of knowledge on what controls variability in boreal bird populations or the linkage between bird population fluctuations and productivity. The essential role that birds can provide is to clarify important ecological concerns and variables that not only will help to sustain bird populations, but also will contribute to the long−term health of the boreal forest for all species, including humans.