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Dive into the research topics where Gerrit Jan Koomen is active.

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Featured researches published by Gerrit Jan Koomen.


Journal of Biological Chemistry | 1998

Generation of Specific Deoxynojirimycin-type Inhibitors of the Non-lysosomal Glucosylceramidase

Herman S. Overkleeft; G. Herma Renkema; Jolanda Neele; Paula Vianello; Irene O. Hung; Anneke Strijland; Alida M. van der Burg; Gerrit Jan Koomen; Upendra K. Pandit; Johannes M. F. G. Aerts

The existence of a non-lysosomal glucosylceramidase in human cells has been documented (van Weely, S., Brandsma, M., Strijland, A., Tager, J. M., and Aerts, J. M. F. G. (1993) Biochim. Biophys. Acta 1181, 55–62). Hypothetically, the activity of this enzyme, which is localized near the cell surface, may influence ceramide-mediated signaling processes. To obtain insight in the physiological importance of the non-lysosomal glucosylceramidase, the availability of specific inhibitors would be helpful. Here we report on the generation of hydrophobic deoxynojirimycin (DNM) derivatives that potently inhibit the enzyme. The inhibitors were designed on the basis of the known features of the non-lysosomal glucosylceramidase and consist of a DNM moiety, an N-alkyl spacer, and a large hydrophobic group that promotes insertion in membranes. In particular,N-(5-adamantane-1-yl-methoxy)pentyl)-DNM is a very powerful inhibitor of the non-lysosomal glucosylceramidase at nanomolar concentrations. At such concentrations, the lysosomal glucocerebrosidase and α-glucosidase, the glucosylceramide synthase, and the N-linked glycan-trimming α-glucosidases of the endoplasmic reticulum are not affected.


Journal of The Chemical Society-perkin Transactions 1 | 1973

Unconventional nucleotide analogues. Part X. Synthesis of N-substituted 3-(adenin-9-yl)pyrrolidin-2-ones

Gerrit Jan Koomen; Abraham P. Kroon; Franciso R. Mas Cabré; Alfred P. Goores; Rob Peereboom; Upendra K. Pandit

3-(Adenin-9-yl)-N-2-hydroxyethylpyrrolidin-2-one (1) was synthesized by constructing the purine base on the amino-group of 3-amino-N-2-hydroxyethylpyrrolidin-2-one (3), itself obtained from 2-dibenzylaminobutyro-lactone by aminolysis, followed by chlorination of the product and recyclization. Attempts to obtain compound (3) from acylated 2-aminobutyrolactones (4a and b) led to side reactions, the mechanisms of which are discussed. 3-(6-Chloropurin-9-yl)-N-2-hydroxyethylpyrrolidin-2-one (18b) was converted into the AMP analogue (2) by a phosphorylation–amination–debenzylation sequence, lodination of compound (1), followed by dehydrohalogen-ation of the product led to the N-vinyl derivative (21 ), a monomer for a poly-A model.


Journal of The Chemical Society-perkin Transactions 1 | 1973

Unconventional nucleotide analogues. Part IX. N-substituted 3-( pyrimidin-1-yl)pyrrolidin-2-ones

Gerrit Jan Koomen; Upendra K. Pandit

Hubert–Johnson reaction of the 2,4-diethoxypyrimidines (2a and b) with 2-bromobutyrolactone (3), followed by hydrolysis of the coupling products (4a and b), gave the pyrimidin-1-yl lactones (5a and b). 2-(1,2,3,4-Tetra-hydro-2,4-dioxopyrimidin-1 -yl)butyrolactone (5a) was converted into the N-vinyipyrrolidin-2-one analogue (11)via a five-step reaction sequence [(5a)→(7a)→(7b)→(8)→(10c)→(11)]. Polymerisation of the product (11) yielded material (12)(mol. wt. 80,000) which, in aqueous solution, exhibited a pronounced (25%) hypochromicity effect at 263 nm.


Journal of Medicinal Chemistry | 1977

Potential carcinostatics. Synthesis and biological properties of d- and 1-beta,beta-difluoroaspartic acid and beta,beta-difluoroasparagine.

Johanna J. M. Hageman; Martinus J. Wanner; Gerrit Jan Koomen; Upendra K. Pandit


Journal of the American Chemical Society | 2005

The Mechanism of Selective Purine C-Nitration Revealed: NMR Studies Demonstrate Formation and Radical Rearrangement of an N7-Nitramine Intermediate

Boris Rodenko; M. Koch; A.M. van der Burg; Martin J. Wanner; Gerrit Jan Koomen


Journal of Medicinal Chemistry | 1980

Potential carcinostatics. 4. Synthesis and biological properties of erythro- and threo-.beta.-fluoroaspartic acid and erythro-.beta.-fluoroasparagine

Martinus J. Wanner; Johanna J. M. Hageman; Gerrit Jan Koomen; Upendra K. Pandit


ChemInform | 1986

Pyridocarbazole Alkaloids. Synthesis of Olivacine and Ellipticine Analogues.

W. F. A. Wijsmuller; Martin J. Wanner; Gerrit Jan Koomen; Upendra K. Pandit


ChemInform | 1980

POTENTIAL CARCINOSTATICS. 4. SYNTHESIS AND BIOLOGICAL PROPERTIES OF ERYTHRO- AND THREO-β-FLUOROASPARTIC ACID AND ERYTHRO-β-FLUOROASPARAGINE

Martin J. Wanner; J. J. M. Hageman; Gerrit Jan Koomen; Upendra K. Pandit


ChemInform | 1978

POTENTIAL CARCINOSTATICS. PART II. SYNTHESIS AND PROPERTIES OF POTENTIAL INHIBITORS OF THE ADENYLOSUCCINATE SYNTHETASE AND ADENYLOSUCCINATE LYASE SYSTEMS

Martin J. Wanner; J. J. M. Hageman; Gerrit Jan Koomen; Upendra K. Pandit


Archive | 2013

Deoxy-nojirimycin derivative and use of derivative as glucosylceramidase inhibitor

Johannes Maria Franciscus Gerardus Aerts; マリア フランシスキュス ヘラルデュス アエルツ,ヨハネス; Upendra K. Pandit; クマール パンディット,ウペンドラ; Gerrit Jan Koomen; ヤン コーメン,ヘルリット; Herman Steven Overkleeft; ステーヴェン オーヴァークレーフト,ヘルマン; Paola Vianello; ヴィアネロ,パオラ

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Boris Rodenko

Netherlands Cancer Institute

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