Gilles Grégoire

Ultrafast deactivation mechanisms of protonated aromatic amino acids following UV excitation

Deactivation pathways of electronically excited states have been investigated in three protonated aromatic amino acids: tryptophan (Trp), tyrosine (Tyr) and phenylalanine (Phe). The protonated amino acids were generated by electrospray and excited with a 266 nm femtosecond laser, the subsequent decay of the excited states being monitored through fragmentation of the ions induced and/or enhanced by another femtosecond pulse at 800 nm. The excited state of TrpH+ decays in 380 fs and gives rise to two channels: hydrogen atom dissociation or internal conversion (IC). In TyrH, the decay is slowed down to 22.3 ps and the fragmentation efficiency of PheH+ is so low that the decay cannot be measured with the available laser. The variation of the excited state lifetime between TrpH+ and TyrH+ can be ascribed to energy differences between the dissociative pi sigma* state and the initially excited pi pi* state.

Resonant infrared multiphoton dissociation spectroscopy of gas-phase protonated peptides. Experiments and Car–Parrinello dynamics at 300 K

The gas-phase structures of protonated peptides are studied by means of resonant infrared multiphoton dissociation spectroscopy (R-IRMPD) performed with a free electron laser. The peptide structures and protonation sites are obtained through comparison between experimental IR spectra and their prediction from quantum chemistry calculations. Two different analyses are conducted. It is first supposed that only well-defined conformations, sufficiently populated according to a Boltzmann distribution, contribute to the observed spectra. On the contrary, DFT-based Car-Parrinello molecular dynamics simulations show that at 300 K protonated peptides no longer possess well-defined structures, but rather dynamically explore the set of conformations considered in the first conventional approach.

Investigation of the protonation site in the dialanine peptide by infrared multiphoton dissociation spectroscopy

Protonated dialanine cations have been isolated in a Fourier transform ion cyclotron resonance mass-spectrometer (FT-ICR-MS) and subjected to infrared multiphoton dissociation (IRMPD) at the free electron laser facility CLIO in Orsay (France). The spectral dependence of the IR induced fragmentation pattern in the mid-infrared region (800–2000 cm−1) is interpreted with the help of structure and vibrational spectrum calculations of the different protonated conformers. This comparison allows for the assignment of the proton on the terminal amino group, as the most favourable proton site, the neighbouring amide bond being in the trans conformation.

Intracluster hydrogen transfer followed by dissociation in the phenol–(NH3)3 excited state: PhOH(S1)–(NH3)3→PhO•+(NH4)(NH3)2

The study of the phenol–(NH3)3 cluster with two-color two-photon ionization shows that the main ion observed with delays between the lasers up to a few hundred nanoseconds is the (NH4)+(NH3)2 fragment, resulting from direct ionization of the (NH4)(NH3)2 product coming from the reaction: PhOH(S1)–(NH3)3→PhO•+(NH4)(NH3)2.

Photo-induced dissociation of protonated tryptophan TrpH+: A direct dissociation channel in the excited states controls the hydrogen atom loss

Protonated tryptophan ions (TrpH+) are generated by electrospray ionization and dissociated by irradiation with a UV laser. Different photo-fragments are observed among which a new photo-induced dissociation channel leading to the loss of a hydrogen atom that is not observed in conventional collision-induced dissociation. A tryptophan radical cation (Trp+) is produced in this process that subsequently leads to the m/z = 130 fragment through a Cα–Cβ bond cleavage, a typical fragmentation product of the Trp+ radical cation generated either by electron impact or by photo-ionization. These results can be understood considering the excited states of protonated tryptophan: UV excitation of TrpH+ produces a mixed ππ*/πσ* state, the ππ* state being mainly located on the indole chromophore while the πσ* is mainly on the protonated terminal amino group. This πσ* state is repulsive along the N–H bond coordinate and leads either to hydrogen atom detachment producing a Trp+ radical cation that undergoes further fragmentations or to internal conversion to the ground state of the protonated TrpH+ ion.

Photoionization of 2-pyridone and 2-hydroxypyridine

We studied the photoionization of 2-pyridone and its tautomer, 2-hydroxypyridine by means of VUV synchrotron radiation coupled to a velocity map imaging electron/ion coincidence spectrometer. The photoionization efficiency (PIE) spectrum is composed of steps. The state energies of the [2-pyridone](+) cation in the X[combining tilde] ground and A excited electronic states, as well as of the [2-hydroxypyridine](+) cation in the electronic ground state, are determined. The slow photoelectron spectra (SPES) are dominated by the 0(0)(0) transitions to the corresponding electronic states together with several weaker bands corresponding to the population of the pure or combination vibrational bands of the cations. These vibrationally-resolved spectra compare very well with state-of-the-art calculations. Close to the ionization thresholds, the photoionization of these molecules is found to be mainly dominated by a direct process whereas the indirect route (autoionization) may contribute at higher energies.

Infrared Signature of DNA G-Quadruplexes in the Gas Phase

DNA oligonucleotide ions forming G-quadruplex structures were studied in the gas phase using IRMPD spectroscopy. Data interpretation on these large biomolecule ions was made using carefully chosen control experiments. The major finding is a fingerprint of hydrogen bonding in the gas phase in the guanine C6O6 stretching mode that allows probing of the conservation of G-quartets in the gas phase. The experiments demonstrate the conservation of G-quadruplex hydrogen bonds in the human telomeric sequence d(TTAGGG)4.

A forgotten channel in the excited state dynamics of phenol–(ammonia)n clusters: hydrogen transfer

Small phenol–(NH3)n clusters have been studied through two-color two-photon and one-photon VUV ionization, in order to disentangle the contributions of various dissociation or reaction paths in the excited and ionic states. The most striking result of the two-color experiment is that (NH4)+(NH3)n=1,5 fragments are observed with large delays (up to a few hundred nanoseconds) between the excitation and ionization lasers, whereas these same fragments are not observed in the VUV one-photon ionization experiment. In order to account for these findings, a new deactivation channel in the excited state of phenol–(NH3)n clusters has to be introduced: the hydrogen atom transfer PhOH(S1)–(NH3)n→PhO•+(NH4)(NH3)n−1. In this case, the delayed (NH4)+(NH3)n−1 signals correspond to direct ionization of the (NH4)(NH3)n−1 clusters produced in the excited state.

Electronic Spectra of the Protonated Indole Chromophore in the Gas Phase

The electronic spectroscopy of cold protonated indole was investigated experimentally and theoretically. Two isomers were observed by experiment: The first isomer corresponds to the lowest-energy isomer in the calculations, absorbing at ~350 nm and protonated on the C3 atom of the pyrrole ring. According to our calculations, the absorptions of the other isomers protonated on carbon atoms (C2, C4, C5, C6, and C7) are in the visible region. Indeed, the absorption of the second observed isomer starts at 488 nm and was assigned to protonation on the C2 carbon of the pyrrole ring. Because good agreement was obtained between the calculated and experimental transitions for the observed isomers, reasonable ab initio transition energies can also be expected for the higher-energy isomers protonated on other carbon atoms, which should also absorb in the visible region. Protonation on the nitrogen atom leads to a transition that is blue-shifted with respect to that of the most stable isomer.

Comprehensive characterization of the photodissociation pathways of protonated tryptophan

The photofragmentation of protonated tryptophan has been investigated in a unique experimental setup, in which ion and neutral issued from the photofragmentation are detected in coincidence, in time and in position. From these data are extracted the kinetic energy, the number of neutral fragments associated with an ion, their masses, and the order of the fragmentation steps. Moreover, the fragmentation time scale ranging from tens of nanoseconds to milliseconds is obtained. From all these data, a comprehensive fragmentation mechanism is proposed.