Glauco Tonachini

Master equation simulations of competing unimolecular and bimolecular reactions: application to OH production in the reaction of acetyl radical with O2

Master equation calculations were carried out to simulate the production of hydroxyl free radicals initiated by the reaction of acetyl free radicals (CH3(C=O).) with molecular oxygen. In particular, the competition between the unimolecular reactions and bimolecular reactions of vibrationally excited intermediates was modeled by using a single master equation. The vibrationally excited intermediates (isomers of acetylperoxyl radicals) result from the initial reaction of acetyl free radical with O2. The bimolecular reactions were modeled using a novel pseudo-first-order microcanonical rate constant approach. Stationary points on the multi-well, multi-channel potential energy surface (PES) were calculated at the DFT(B3LYP)/6-311G(2df,p) level of theory. Some additional calculations were carried out at the CASPT2(7,5)/6-31G(d) level of theory to investigate barrierless reactions and other features of the PES. The master equation simulations are in excellent agreement with the experimental OH yields measured in N2 or He buffer gas near 300 K, but they do not explain a recent report that the OH yields are independent of pressure in nearly pure O2 buffer gas.

Synthesis of Five-Membered Cyclic Ethers by Reaction of 1,4-Diols with Dimethyl Carbonate

The reaction of 1,4-diols with dimethyl carbonate in the presence of a base led to selective and high-yielding syntheses of related five-membered cyclic ethers. This synthetic pathway has the potential for a wide range of applications. Distinctive cyclic ethers and industrially relevant compounds were synthesized in quantitative yield. The reaction mechanism for the cyclization was investigated. Notably, the chirality of the starting material was maintained. DFT calculations indicated that the formation of five-membered cyclic ethers was energetically the most favorable pathway. Typically, the selectivity exhibited by these systems could be rationalized on the basis of hard-soft acid-base theory. Such principles were applicable as far as computed energy barriers were concerned, but in practice cyclization reactions were shown to be entropically driven.

The mechanism of the Stevens and Sommelet-Hauser Rearrangements. A Theoretical Study

The [1,2] and [2,3] migration steps in the Stevens and Sommelet-Hauser rearrangements which occur in the ylides of quaternary ammonium salts have been studied at M05-2x levels. The Stevens migration has been found to take place through a diradical pathway in several cases (tetramethylammonium, benzyltrimethylammonium, benzylphenacyldimethylammonium ylides). By contrast, in the phenyltrimethylammonium ylide this reaction takes place through a concerted process. The Sommelet-Hauser rearrangement takes place through a concerted transition structure. The most important factor determining the extent of competition with the Stevens rearrangement is the difference in the reaction energies as the formation of the Sommelet-Hauser intermediate is significantly less endoergic.

D-orbital effects and the structure of the alpha-thiocarbanion

Improved computational results show that sulfur-3d orbital effects are essential for the proper description of the bonding in the alpha-thiocarbanions −CH2SH and −CH2SCH3. The nature of the d-orbital effects has been analyzed, and reasons for the earlier failures to fine these effects have been determined.

The oxidized soot surface: Theoretical study of desorption mechanisms involving oxygenated functionalities and comparison with temperature programed desorption experiments

The desorption mechanism for oxygenated functionalities on soot is investigated by quantum mechanical calculations on functionalized polycyclic aromatic hydrocarbon (PAH) models and compared with recently published temperature programed desorption-mass spectrometry results. Substituents on PAHs of increasing size (up to 46 carbon atoms in the parent PAH) are chosen to reproduce the local features of an oxidized graphenic soot platelet. Initially, the study is carried out on unimolecular fragmentation (extrusion, in some cases) processes producing HO, CO, or CO2, in model ketones, carboxylic acids, lactones, anhydrides, in one aldehyde, one peroxyacid, one hydroperoxide, one secondary alcohol, and one phenol. Then, a bimolecular process is considered for one of the carboxylic acids. Furthermore, some cooperative effect which can take place by involving two vicinal carboxylic groups (derived from anhydride hydrolysis) is investigated for other four bifunctionalized models. The comparison between the computed fragmentation (desorption) barriers for the assessed mechanisms and the temperature at which maxima occur in TPD spectra (for HO, CO, or CO2 desorption) offers a suggestion for the assignment of these maxima to specific functional groups, i.e., a key to the description of the oxidized surface. Notably, the computations suggest that (1) the desorption mode from a portion of a graphenic platelet functionalized by a carboxylic or lactone groups is significantly dependent from the chemical and geometric local environment. Consequently, we propose that (2) not all carboxylic groups go lost at the relatively low temperatures generally stated, and (3) lactone groups can be identified as producing not only CO2 but also CO.

Combustion and atmospheric oxidation of hydrocarbons: Theoretical study of the methyl peroxyl self-reaction

Alkyl peroxyls form in the atmospheric oxidation of hydrocarbons and in their combustion. When NO concentration is low, they can appreciably react with themselves. This reaction has both propagation and termination channels. Multireference second-order perturbative energy calculations CAS(16,12)-PT2/6-311G(2df,p) have been carried out on the CAS(8,8)-MCSCF/6-311G(d,p) geometries pertaining to the reaction pathways explored. The tetroxide intermediate put forward first by Russell in 1957 is found as a stable energy minimum, but the calculations indicate that, as the system moves from atmospheric to combustion temperatures, its formation becomes problematic. A concerted synchronous transition structure, apt to connect it with the termination products, formaldehyde, methanol, and dioxygen, is not found. The concerted dissociation of the two external O–O bonds in the tetroxide leads to the 3(2CH3O•)2⋯3O2 complex, with overall singlet spin multiplicity. Both termination via H transfer, to give H2CO, CH3OH, and...

Reaction of dialkyl carbonates with alcohols: Defining a scale of the best leaving and entering groups*

A series of dialkyl and methyl alkyl carbonates has been synthesized and their reactivity investigated. The behavior of preferential leaving and entering groups for the newly synthesized carbonates has been accurately investigated. Both experimental and computational studies agreed that the scale of leaving groups follows the trend: PhCH2O–, MeO– ≥ EtO–, CH3(CH2)2O–, CH3(CH2)7O– > (CH3)2CHO– > (CH3)3CO–. Accordingly, the scale of the entering group has the same trend, with t-butoxide being the worst entering group. A preliminary attempt to rationalize the nucleofugality trends, limited to the (CH3)3CO– and CH3O– groups, has indicated that a likely origin of the observed trends lies in the different entropic contributions and solvation effects.

Polycyclic aromatic hydrocarbon formation mechanism in the “particle phase”. A theoretical study

The synthesis of polycyclic aromatic hydrocarbons (PAHs) and the formation of soot platelets occur both during combustion at relatively low [O(2)], or under pyrolysis conditions. When the PAH size grows beyond the number of three-four condensed cycles, the partitioning of PAHs between the gas and particle phases favours the latter (i.e. adsorption). This study aims to assess which role the soot particle plays during PAH synthesis, in particular if catalytic or template effects of some sort can be exerted by the soot platelet on the adsorbed growing PAH-like radical. Our theoretical calculations indicate that chain elongation by ethyne addition cannot compete with cyclization when both can take place in the growing PAH-like radical, already in the gas phase. When it is adsorbed, cyclization is found to become easier than in the gas phase (more so, in terms of Gibbs free energy barriers, at higher temperatures), hinting at some sort of template effect, while chain elongation by ethyne addition becomes somewhat more difficult. The underlying soot platelet can assist (at lower temperatures) the formation of a larger aromatic hydrocarbon, by a final hydrogen abstraction from that endocyclic saturated carbon the newly formed cycle still bears. As an alternative (at higher temperature), a spontaneous hydrogen atom loss can take place. Finally, at rather low temperatures, the addition of the growing radical to the underlying soot platelet might occur and cause some reticulation, form more disordered structures, i.e. soot precursors instead of PAHs.

Oxidation of ethyne and but-2-yne. 2. Master equation simulations

The aim of this study is to improve understanding of the tropospheric oxidation of ethyne (acetylene, C2H2) and but-2-yne, which takes place in the presence of HO and O2. The details of the potential energy hypersurface have been discussed in a previous article [Maranzana et al., J. Phys. Chem. A 2008, 112, XXXX]. For both molecules, the initial addition of HO radical to the triple bond is followed by addition of O2 to form peroxyl radicals. In both reaction systems, the peroxyl radicals take two isomeric forms, E1 and E2 for ethyne and e1 and e2 for but-2-yne. Energy transfer parameters (alpha = 250 cm-1) for the ethyne system were obtained by simulating laboratory data for N2 buffer gas, where O2 was not present. In simulations of C2H2 + HO when O2 is present, E1 reacts completely and E2 reacts almost completely, before thermalization. Radical E1 produces formic acid ( approximately 44%) and E2 gives glyoxal ( approximately 53%), in quite good agreement with experiments. For but-2-yne, pressure-dependent laboratory data are too scarce to obtain energy transfer parameters directly, so simulations were carried out for a range of values: alpha = 200-900 cm-1. Excellent agreement with the available experimental yields at atmospheric pressure was obtained with alpha = 900 cm-1. Two reaction channels are responsible for acetic acid formation, but one is clearly dominant. Biacetyl is produced by reactions of e1 and, to a minor extent, e2. The peroxyl radical e2 leads to less than 8% of all products. Vinoxyl radical (which has been reported in experiments involving C2H2 + HO) and products of its reactions are predicted to be negligible under atmospheric conditions.

Tropospheric Oxidation of Ethyne and But-2-yne. 1. Theoretical Mechanistic Study

This paper (part 1) and the following one (part 2) aim to assess the viability of some tropospheric oxidation channels for two symmetrical alkynes, ethyne (acetylene) and but-2-yne. Paper 1 defines the features of the DFT(B3LYP)/6-311G(3df,2p) energy hypersurface and qualitatively considers the practicability of different pathways through the estimate of free energy barriers. Paper 2 will assess this in more detail by way of master equation simulations. Oxidized in the presence of HO and O2 (with the possible intervention of NO), ethyne and but-2-yne are known to produce mainly glyoxal or dimethylglyoxal and, to a lesser extent, formic or acetic acid. The initial attack by HO gives an adduct, from which several pathways (1a-c, 2a-e) originate. Pathway 1a passes through the 2-oxoethyl (vinoxyl) radical, or the analogous dimethyl-substituted intermediate, which could in principle undergo O2 addition (and subsequently, but through a demanding step, give the dialdehydes). However, in paper 2 it is assessed that the vinoxyl, as a nonthermalized intermediate, will preferentially follow unimolecular pathways to ketene or acetyl. Pathway 2a is the most important pathway: a very steep free energy cascade, started by O2 addition to the initial HO adduct with a concerted barrierless 1,5 H shift, gives a hydroperoxyalkenyloxyl radical intermediate. Peroxy bond cleavage finally produces the dialdehydes and regenerates HO. Pathways 2b and 2c originate from O2 addition to the initial HO adduct and produce, via different ring closures, either dioxetanyl or alkyl dioxiranyl radicals, respectively. Two subsequent fragmentations occur in both cases and give the carboxylic acids and a carbonyl radical, which can indirectly generate hydroxyl. Two further pathways (1c and 2e) see NO intervention onto the peroxyl radicals formed along pathways 1 and 2. Both could enhance dialdehyde production, while simultaneously depressing the carboxylic acid yield.