Gozde Eskici

Infrared spectroscopy of proteins in reverse micelles.

Reverse micelles are a versatile model system for the study of crowded microenvironments containing limited water, such as those found in various tissue spaces or endosomes. They also preclude protein aggregation. Reverse micelles are amenable to study by linear and nonlinear infrared spectroscopies, which have demonstrated that the encapsulation of polypeptides and enzymatically active proteins into reverse micelles leads to conformational changes not seen in bulk solution. The potential value of this model system for understanding the folding and kinetic behavior of polypeptides and proteins in biologically important circumstances warrants increased study of reverse micelle systems by infrared spectroscopy. This article is part of a Special Issue entitled: FTIR in membrane proteins and peptide studies.

Mass Exchange and Equilibration Processes in AOT Reverse Micelles

Reverse micelles (RMs) made with sodium bis(2-ethylhexyl)sulfosuccinate suspended in isooctane are commonly used experimental models of aqueous microenvironments. However, there are important unanswered questions about the very characteristic that makes them of interest, namely their size. To explore the factors that determine the size of RMs, all-atom molecular dynamics simulations of RMs with different sizes but the same water-loading ratio were performed. An Anton 2 machine was used so that systems of the necessary size could be extended into the microsecond timescale, and mass exchange processes could be observed. Contrary to hypothesis, there were no net gains or losses of water by diffusion between RMs of different size. However, gains and losses did occur following fusion events. RM fusion followed RM contact only when waters were present among the hydrophobic surfactant chains at the point of contact. The presence of an encapsulated 40-residue amyloid beta peptide did not directly promote RM fusion, but it quickly and efficiently terminated each fusion event. Before fusion terminated, however, the size of the peptide-containing RM increased without a corresponding change in its water-loading ratio. We conclude that the mass transfer between RMs is most likely accomplished through transient fusion events, rather than through the diffusion of component molecules through the organic phase. The behavior of the amyloid beta peptide in this system underscores its propensity to embed in, and fold in response to, multiple interactions with the surfactant layer.

Amyloid Beta Peptide Folding in Reverse Micelles

Previously published experimental studies have suggested that when the 40-residue amyloid beta peptide is encapsulated in a reverse micelle, it folds into a structure that may nucleate amyloid fibril formation (Yeung, P. S.-W.; Axelsen, P. H. J. Am. Chem. Soc. 2012, 134, 6061 ). The factors that induce the formation of this structure have now been identified in a multi-microsecond simulation of the same reverse micelle system that was studied experimentally. Key features of the polypeptide-micelle interaction include the anchoring of a hydrophobic residue cluster into gaps in the reverse micelle surface, the formation of a beta turn at the anchor point that brings N- and C-terminal segments of the polypeptide into proximity, high ionic strength that promotes intramolecular hydrogen bond formation, and deformation of the reverse micelle surface to facilitate interactions with the surface along the entire length of the polypeptide. Together, these features cause the simulation-derived vibrational spectrum to red shift in a manner that reproduces the red-shift previously reported experimentally. On the basis of these findings, a new mechanism is proposed whereby membranes nucleate fibril formation and facilitate the in-register alignment of polypeptide strands that is characteristic of amyloid fibrils.