Gregory W. Stevenson

Emergence of Porcine epidemic diarrhea virus in the United States: clinical signs, lesions, and viral genomic sequences

During the 10 days commencing April 29, 2013, the Iowa State University Veterinary Diagnostic Laboratory received the first 4 of many submissions from swine farms experiencing explosive epidemics of diarrhea and vomiting affecting all ages, with 90–95% mortality in suckling pigs. Histology revealed severe atrophy of villi in all segments of the small intestines with occasional villus-epithelial syncytial cells, but testing for rotaviruses and Transmissible gastroenteritis virus (Alphacoronavirus 1) were negative. Negative-staining electron microscopy of feces revealed coronavirus-like particles and a pan-coronavirus polymerase chain reaction (PCR) designed to amplify a conserved region of the polymerase gene for all members in the family Coronaviridae produced expected 251-bp amplicons. Subsequent sequencing and analysis revealed 99.6–100% identity among the PCR amplicons from the 4 farms and 97–99% identity to the corresponding portion of the polymerase gene of Porcine epidemic diarrhea virus (PEDV) strains, with the highest identity (99%) to strains from China in 2012. Findings were corroborated at National Veterinary Services Laboratories using 2 nested S-gene and 1 nested N-gene PCR tests where the sequenced amplicons also had the highest identity with 2012 China strains. Whole genome sequence for the virus from 2 farms in 2 different states using next-generation sequencing technique was compared to PEDV sequences available in GenBank. The 2013 U.S. PEDV had 96.6–99.5% identity with all known PEDV strains and the highest identity (>99.0%) to some of the 2011–2012 Chinese strains. The nearly simultaneous outbreaks of disease, and high degree of homology (99.6–100%) between the PEDV strains from the 4 unrelated farms, suggests a common source of virus.

Isolation and Characterization of Porcine Epidemic Diarrhea Viruses Associated with the 2013 Disease Outbreak among Swine in the United States

ABSTRACT Porcine epidemic diarrhea virus (PEDV) was detected in May 2013 for the first time in U.S. swine and has since caused significant economic loss. Obtaining a U.S. PEDV isolate that can grow efficiently in cell culture is critical for investigating pathogenesis and developing diagnostic assays and for vaccine development. An additional objective was to determine which gene(s) of PEDV is most suitable for studying the genetic relatedness of the virus. Here we describe two PEDV isolates (ISU13-19338E and ISU13-22038) successfully obtained from the small intestines of piglets from sow farms in Indiana and Iowa, respectively. The two isolates have been serially propagated in cell culture for over 30 passages and were characterized for the first 10 passages. Virus production in cell culture was confirmed by PEDV-specific real-time reverse-transcription PCR (RT-PCR), immunofluorescence assays, and electron microscopy. The infectious titers of the viruses during the first 10 passages ranged from 6 × 102 to 2 × 105 50% tissue culture infective doses (TCID50)/ml. In addition, the full-length genome sequences of six viruses (ISU13-19338E homogenate, P3, and P9; ISU13-22038 homogenate, P3, and P9) were determined. Genetically, the two PEDV isolates were relatively stable during the first 10 passages in cell culture. Sequences were also compared to those of 4 additional U.S. PEDV strains and 23 non-U.S. strains. All U.S. PEDV strains were genetically closely related to each other (≥99.7% nucleotide identity) and were most genetically similar to Chinese strains reported in 2011 to 2012. Phylogenetic analyses using different genes of PEDV suggested that the full-length spike gene or the S1 portion is appropriate for sequencing to study the genetic relatedness of these viruses.

Circovirus-like Viral Associated Disease in Weaned Pigs in Indiana

Inclusion bodies with staining affinity and ultrastructural characteristics typical of circoviruses that stained positive for porcine circovirus (PCV)-like virus were demonstrated in association with granulomatous lesions in multiple tissues of three clinically ill 10- to 12-week-old pigs. A syndrome of poor growth and wasting in 5–15% of weaned pigs was an intermittent problem on a 450-sow one-site farrow-to-finish swine farm in Indiana. Routine diagnostic testing did not demonstrate a cause. Gross examination of three representative weaned pigs from two farrowing groups over a 1-month period revealed generalized lymphadenopathy and interstitial pneumonia. A unique microscopic finding for all three pigs was granulomatous inflammation of lymphoid tissues associated with large numbers of multinucleate giant cells and characteristic viral inclusions in the cytoplasm of macrophages. These inclusions were round, homogeneous, and magenta to basophilic, varied in size (5–25 μm), and either were single or formed botryoid clusters. Ultrastructurally, these inclusions were composed of electron-dense paracrystalline arrays of small nonenveloped icosahedral viral particles that were approximately 17 nm in diameter. The sizes and shapes of the virus particles, the unique microscopic appearance of the inclusions, and the positive staining of the intracytoplasmic viral inclusions by the Feulgen technique are consistent with circoviruses. Immunohistochemistry for PCV-like virus demonstrated viral antigen in the cytoplasm of macrophages that were within inflammatory infiltrates in a variety of organs. The described inclusion bodies stained positively.

Endemic Porcine Reproductive and Respiratory Syndrome Virus Infection of Nursery Pigs in Two Swine Herds without Current Reproductive Failure

An outbreak of porcine reproductive and respiratory synbuildings. Far-rowing rooms were managed all-in/all-out, and drome (PRRS), formerly called swine infertility and reproductive syndrome or mystery swine disease, occurred on 18 nursery, tinuous growing, and finishing rooms flow. Pigs were weaned into were managed nursery rooms as conat 3-4 farms in Wabash County, Indiana, in the spring of 1989. weeks of age and moved from nursery rooms to growing An extensive diagnostic investigation conducted at Purdue rooms at 9-10 weeks of age. In April 1989, there was an Animal Disease Diagnostic Laboratory (ADDL) and diagacute outbreak of PRRS. Many sows farrowed prematurely nostic testing at a number of other laboratories did not result in a conclusive etiologic diagnosis. In July 1991, a novel virus (Lelystad virus) was Institute in Lelystad, The isolated at th Netherlands, e Cen from tral Veterinary pigs and sows (days 107-111 of gestation), and most litters were composed of weak live-born pigs, dead pigs. in various stages of in utero autolysis, was high and occasional mummified pigs in suckling and weanling pigs. . The mortality Reproductive rate peron Dutch farms that were experiencing PRRS-like outformance and mortality in suckling pigs returned to prebreaks. Disease typical of PRRS was reproduced by inocPRRS levels within 3 months; however, mortality in nursery ulation of pregnant sows and specific-pathogen-free pigs with pigs remained elevated. Nursery mortality averaged 3.1% for Lelystad virus. Frozen convalescent sera collected from the 11 months before the PRRS outbreak, compared with affected farms during the 1989 PRRS outbreak in Wabash 7.4% for the 34 months (ending January 1992) following the County were among those forwarded by The ADDL to the outbreak (Fig. 1). Since the PRRS outbreak, nursery morCentral Veterinary Institute in July 1991. Antibodies that tality has been cyclic, with 5-6 months of low mortality (3reacted with Lelystad virus in an immunoperoxidase mono5%) followed by 5-6 months of higher mortality (7-16%). layer assay were detected in some of those sera. Highest mortality occurred in winter months. Most pigs died Within 3 months of the onset of the 1989 epizootic of 2-3 weeks after weaning (5-7 weeks of age). Affected pigs PRRS on Wabash County farms, reproductive performance and suckling pig performance returned to pre-PRRS levels; however, continued poor performance of on some farms. An nursery and/or enzootic infecti grower on with Pigs the initially were lethargic then exhibited anorexia and cyanosis of skin on the extremities within 12-24 hours. On day 2 of the illness, days after some onset pigs became dyspneic. Most pigs died 1-3 of clinical signs. Response to multiple inPRRS virus in the nursery and/or grower pigs was suspected tramuscular injections of broad spectrum antibiotics was poor. on these farms. In December 1991, 2 of these farms were Farm 2 was a 1,000-sow far-row-to-finish farm in which selected for further investigation. The goal was to determine all animals were housed in enclosed environmentally reguwhether clinically ill nursery pigs were infected with the PRRS virus. On each farm, the owner and/or herd manager helped lated buildings. ing rooms were Management was managed all-in/all similar to farm 1. Farrowgrowing, -out, and nursery, select 8 “typical” acutely affected nursery pigs. Selected pigs and finishing rooms were managed as continuous flow. An had been clinically ill for <24 hours and were 6-8 weeks old. acute outbreak of PRRS occurred in May 1989, and reproHeparinized blood samples were 4 pigs were euthanized and comp collected from all pigs, and lete necropsy examinations ductive performance returned to pre-PRRS levels in 3 months. Detailed mortality records were not available, but cyclic elevations in outbreak. nursery mortality have continued since the PRRS were performed. PRRS pulmonary macrophage virus isolation in primary cultures was completed on porcine washed buffy coat cells pigs that were from necro all pigs and from psied. Microscopi lung and spleen from c examination of tisNecropsy fi f septicemic o ndings in all 8 pigs from both salmonellosis. Pigs were thin, farms were typical with rough hair sues and laboratory tests for common viral and bacterial coats, and had purple discoloration of skin on the ventral pathogens were completed on selected tissues for all pigs. abdomen and extremities. There was mild to moderate icFarm 1 was a 500-sow farrow-to-finish farm in which all terus and serous atrophy of fat. Lungs failed to collapse comanimals were housed in enclosed environmentally regulated pletely. Cranial ventral lung lobules (20-50%) were purple or tan, firm, and moist, and airways contained white opaque From the Animal Disease Diagnostic Laboratory, Purdue Uniexudate. The remaining caudal dorsal lobules were mottled versity, West Lafayette, IN 47906 (Stevenson, Van Alstine, Kanitz), purple-pink and were slightly firm, yet resilient, suggesting and the Swine Health Center, PO Box 335, Roann, IN 46974 (Kefan interstitial pneumonia. Some livers had 1-2-mm-diamfaber). eter white foci scattered throughout the parenchyma. GasReceived for publication November 12, 1992. trohepatic lymph nodes were enlarged (1.5-2.5 times nor-

Pathogenesis of porcine epidemic diarrhea virus isolate (US/Iowa/18984/2013) in 3-week-old weaned pigs

Porcine epidemic diarrhea virus (PEDV) is associated with clinical diarrhea in naïve swine of all ages. This report describes timing of antibody generation and disease progression following infection with a US PEDV isolate by assessing fecal viral shedding, morphometric analysis of intestinal lesions, and magnitude of immunohistochemical staining. Sixty-three, 3-week-old pigs were randomly allocated into control (n=27) and challenged (n=36) groups. Challenged pigs were administered 1 mL of 1 × 10(3) PFU/mL of US/Iowa/18984/2013 PEDV isolate by oro-gastric gavage. Three control and four challenged pigs were necropsied on days post-inoculation (dpi) 1, 2, 3, 4, 7, and weekly thereafter, until study termination on dpi 35. Clinical disease, fecal shedding, body weight, and temperature were monitored during the study period. Diarrhea was observed in challenged pigs beginning for some on dpi 2, affecting a majority of pigs by dpi 6 and subsiding by dpi 10. Average daily gain was significantly lower (P<0.001) for one week post-infection in challenged pigs. PEDV was detected in feces by PCR on dpi 1 and continued in a subset of pigs until dpi 24. PEDV-specific antigen was detected in villous enterocytes of challenged pigs by immunohistochemistry (IHC) on dpi 1, 2, 3, 4, 7, and 14. Microscopic lesions included severe diffuse atrophic enteritis with significantly reduced (P<0.001) villous length observed on dpi 3, 4, and 7. Under the conditions of this study, fecal shedding of PEDV and IHC staining can precede and continue beyond the observation of clinical signs, thus increasing the risk of viral transmission.

Tissue Distribution and Genetic Typing of Porcine Circoviruses in Pigs with Naturally Occurring Congenital Tremors

Congenital tremors (CT) type A2 is associated with porcine circovirus (PCV) and deficient and abnormal myelin. The aim of this study was to determine the tissue distribution and genetic type of PCV in 1–2-day-old pigs with naturally occurring CT type A2 using in situ hybridization, polymerase chain reaction (PCR), and indirect fluorescent antibody tests on frozen tissue sections. CT-affected and clinically normal pigs were selected from 4 farms in the midwestern USA that were undergoing outbreaks of CT type A2. All CT and most normal pigs were infected with PCV. PCV was widely distributed in tissues of infected pigs and was most common in tissues of the central nervous system and liver. In all infected pigs, there were more PCV-infected cells in brain and spinal cord than in nonneural tissues. CT pigs had many more PCV-infected cells in the brain and spinal cord than did clinically normal pigs because of a more diffuse distribution and a larger proportion of infected cells. The cells most commonly infected with PCV in brain and spinal cord were large neurons. In nonneural tissues, macrophages were the most frequent cell type infected. PCR analysis demonstrated only PCV type 2 and not PCV type 1 in all PCV-infected pigs on all 4 farms.

Viral replication and lesions in BALB/c mice experimentally inoculated with porcine circovirus isolated from a pig with postweaning multisystemic wasting disease.

Eight-week-old BALB/c mice were either sham inoculated (control mice) or were inoculated intraperitoneally (IP) and intranasally (IN) with a single (sPCV mice) or multiple (mPCV mice) doses of porcine circovirus 2 (PCV2). Four control mice and 4 sPCV mice were sacrificed 7, 14, 28, and 42 days postinoculation (PI). All 4 mPCV mice were sacrificed 42 days PI. In addition, 7-day and 14-day pregnant BALB/c mice were either sham inoculated (control mice) or were inoculated IP and IN with a single dose of PCV2. Newborn mice were euthanatized 1, 8, and 15 days after birth. Necropsies were performed on all euthanatized mice and tissues were collected for histopathology, electron microscopy, in situ hybridization, and polymerase chain reaction (PCR). PCV2 replicated in 8-week-old BALB/c mice that were inoculated with PCV2 and caused fetal infection when inoculated into pregnant BALB/c mice at 7 days and 14 days of gestation. PCV was detected by in situ hybridization and PCR in sPCV mice on days 7, 14, 28, and 42 PI; in mPCV mice on day 42 PI; and in newborn mice from mothers inoculated with PCV at 7 days and 14 days of gestation at 1, 8, and 15 days after birth, but not in control mice. No clinical signs or gross lesions were found in sPCV or mPCV mice during the study. Microscopic lesions in sPCV mice and mPCV mice were characterized by expansion of germinal centers in lymphoid organs with large numbers of histiocytic cells and lymphoblasts, apoptosis of histiocytic cells in germinal centers, and mild lymphoid depletion of the paracortex. PCV nucleic acid was detected in the nuclei and cytoplasm of histiocytes and apoptotic cells in germinal centers in lymphoid tissues as well as in the nuclei of hepatocytes in the liver, in the nuclei of renal tubular epithelial cells, and in the cytoplasm of single lymphocytes in the thymus. Congenitally infected mice only had PCV nucleic acid detected in putative Kupffer cells in livers.

Microscopic Lesions Associated with the Isolation of Haemophilus somnus from Pneumonic Bovine Lungs

Sixty-one of 68 sets of bovine lungs from which only Haemophilus somnus was isolated had microscopic lesions of purulent bronchiolitis and bronchopneumonia. In 37 of 61 lungs, the bronchiolar exudates were markedly necrotic with accompanying necrosis of the adjacent bronchiolar epithelium. Bronchiolitis obliterans was prominent in 23 of 28 lungs affected with chronic lesions with abscesses present in seven. Alveolar filling with inflammatory cells (neutrophils with fewer macrophages) was limited to peribronchiolar alveoli in 25 of 61 lungs and was multifocal to diffuse in the other 36. Lesions in the remaining lungs (7 of 68) were classified as fibrinous pneumonia with bronchiolitis (2), fibrinous pleuritis (2), suppurative interstitial pneumonia with vasculitis (2), and diffuse congestion (1).

Porcine reproductive and respiratory syndrome virus does not exacerbate Mycoplasma hyopneumoniae infection in young pigs

The purpose of this study was to determine if Porcine Reproductive and Respiratory Syndrome (PRRS) virus infection altered the severity of acute Mycoplasma hyopneumoniae (MH) infection in young pigs. Twenty five, 3-week-old male pigs were randomly assigned by litter and weight to one of 3 groups. Groups 1 (PRRS only, n = 5) and 2 (PRRS + MH, n = 10) were inoculated intranasally with PRRS virus (IN-5 isolate, 10(5) TCID50) and viremia in all pigs was confirmed by virus isolation from serum 3 days later. Group 3 (MH only, n = 10) was inoculated at the same time with virus free culture media. Seven days after virus inoculation, Groups 2 and 3 were inoculated intratracheally with MH (strain P-5722-3, 10(7) CCU). All pigs were euthanized and necropsied 28 days later, when maximum lesions of mycoplasmosis occurs. Pigs in group 1 did not cough and had no gross lung lesions, but were still viremic at necropsy. MH was isolated from all pigs in groups 2 (avg. log 5.2 +/- 1.3) and 3 (avg. log 5.1 +/- 1.5), but differences were not significant (P = 0.87). Similarly, there were no differences in average days coughing (8.9 +/- 2.8 v 11.2 +/- 4.5, P = 0.17), grossly pneumonic lung (16.5% v 17%, P = 0.91), or microscopic lung lesion scores (10.1 +/- 2.6 v 11.1 +/- 1.9, P = 0.35) between pigs in groups 2 and 3. Under these experimental conditions, PRRS virus infection did not increase the severity of experimental Mycoplasma hyopneumoniae infection in young pigs.

Mice and Rats (Laboratory and Feral) are not a Reservoir for PRRS Virus

Porcine reproductive and respiratory syndrome (PRRS) is caused by an unclassified arterivirus. The syndrome was first reported in the USA in 1987 as epizootics of reproductive failure in sows and respiratory disease in nursery, growing, and fattening pigs. An enzootic form of the disease has now emerged, characterized by interstitial pneumonia and an increased incidence of secondary infections. Because the disease has now become enzootic on many farms, rodents were investigated as a possible reservoir for the infection. Wild rodents from an endemically infected farm were trapped, and virus isolation for PRRS virus (PRRSV) was attempted using porcine primary alveolar macrophage cultures. PRRSV was not isolated from serum and selected pooled tissues (thymus, lung, and spleen) of 14 feral mice and 2 feral rats. Also, transmission experiments were carried out on 3-week-old Balb/c mice and 12-week-old Fischer-344 rats to determine if these species were susceptible to infection. The rodents were inoculated intranasally, orally, and intraperitoneally with a virus proven to transmit PRRS to pigs. Virus isolations from selected pooled tissues (lung, spleen, thymus, and kidney) and from serum were negative, and there were neither gross nor microscopic lesions. Weight gains and white blood cell counts were not significantly different between treated and control groups. These results indicate that rodents are not susceptible to infection with PRRSV and therefore are probably not a reservoir for the disease.