Guy-Alain Junter

Immobilized-cell physiology: current data and the potentialities of proteomics

Despite the sustained development of immobilized-cell (IC) technology over the last 20 years, our knowledge of IC physiology has remained for a long time in the shade of the technological advances involving IC systems. This review surveys the main physiological responses of artificially and naturally immobilized microorganisms and presents recent data on protein expression in ICs that support the existence of a specific metabolic behaviour of microbial cells in the immobilized state.

Primary biodegradability of mineral base oils in relation to their chemical and physical characteristics

The primary biodegradability of 32 mineral base (i.e., unformulated) oils of paraffinic nature was evaluated using the CEC L-33-A-93 test. These oils were refinery products obtained by varying manufacturing processes. Biodegradation percentages ranged between 15% and 75%, i.e., below the commonly accepted standards for environmentally-compatible lubricants. Biodegradability values were compared to the overall chemical composition and main physical properties of base oils. Biodegradability decreased with increasing levels of aromatic and/or polar compounds in the tested oils. For most oils, the biodegradation percentage increased with the viscosity index, but was a decreasing function of the kinematic viscosity (KV), the pour point, the flash point (FP) and the refractive index (RI). Linear relationships between biodegradability and FP or RI values were observed. These results show that, beside chemical features such as the contents in polar and aromatic compounds, simple physical magnitudes such as KV and RI, commonly used to characterize lubricant properties, may be useful parameters for predicting the biodegradability of mineral base oils.

Diffusion of sucrose and dextran through agar gel membranes

Mass transfer limitations severely impede the performance of bioreactions involving large molecules by gel-entrapped microorganisms. This paper describes a quantitative investigation of such diffusional limitations in agar gel membranes. Sucrose and commercial dextran fractions with (weight-average) molecular weights ranging from 10,000 to 2,000,000 Da were used as standard diffusants. For all tested solutes but sucrose, the values of the agar/water partition coefficients highlighted steric hindrance at the entrance of the membrane pores. The effective diffusivity of sucrose in agar was similar to that in water. All dextran fractions, however, displayed restricted diffusion in the agar membranes. Their effective diffusivities were a decreasing function of the agar content of the gel membrane (0.5, 1.0, or 1.5% w/v). The effective diffusivity in a given membrane decreased as the molecular weight of the diffusing molecule increased. T500 (Mw = 470,000 Da) and T2000 (Mw = 1,950,000 Da) fractions were unable to diffuse through 1.0 or 1.5% agar membranes. The diffusion data did not agree with the classical (Renkin) model for a hard sphere diffusing through a cylindrical pore. These results are discussed in terms of gel and diffusant characteristics.

Diffusion of dextran through microporous membrane filters

Abstract The production of large macromolecules such as polysaccharides by microbial cells retained behind microporous membranes is subject to mass transfer limitations within the membranes. This paper describes a quantitative investigation of these diffusional limitations in commercially available microporous membrane filters using various dextran fractions as solutes. Dextran diffusivities in membrane pores were determined using a well-stirred diffusion cell. Dextran fractions were characterized by their intrinsic viscosity and weight-average molecular weight ( M w determined by light scattering. Hydrodynamic radii (rH) were estimated from the macromolecular parameters using the Mark—Houwink and Stokes—Einstein relationships. The tested membranes involved a series of mixed ester cellulose filters with pore radii (rp) ranging from 0.11 to 0.6 μm, two track-etched polycarbonate membranes and one inorganic (alumina) membrane. All macromolecules except the smallest ( M w=10,500, rH=27 A) showed restricted diffusion in the membranes. Their effective diffusivities (Dp) were an increasing function of the membrane pore size. For any given membrane, Dp decreased as M w increased. The diffusion data did not fit the Renkin model for a hard sphere diffusing through a cylindrical pore. These results are discussed in terms of membrane and solute characteristics.

Impact of rpoS deletion on the proteome of Escherichia coli grown planktonically and as biofilm.

To investigate the role of rpoS in gene expression of Escherichia coli cells grown as biofilms, we compared the proteomes of a rpoS mutant and the wild-type strain. Experiments were performed on planktonic cells (in exponential or stationary growth phase) and biofilms developed on glass wool. Spot-by-spot comparison of gels obtained from biofilm and planktonic wild-type organisms showed that the intensity of between 22 and 30% of detected spots was affected by the growth mode, depending of the control used. Principal component analysis, used to interpret the variations in protein spot densities, discriminated exponential-phase cells (wild-type and mutant) from the other incubation conditions and secondarily 72-old cultures. The statistical analysis demonstrated that the rpoS mutation did not significantly modify the proteome of exponential-growth phase cells, the differences involving only 3% of the proteome. However, increasing the incubation time from 8 to 72 h noticeably increased the number of changed proteins. A cluster analysis showed that RpoS plays a role in the special nature of the gene expression of biofilm cells but lower than in stationary-phase bacteria. We identified 35 rpoS-regulated proteins that were already or not described as controlled by this sigma factor. For some of them, the mode of regulation by RpoS was obviously dependent on the culture condition (planktonic vs biofilm).

Exopolysaccharide production by free and immobilized microbial cultures

Abstract The batch production of different exopolysaccharides (alginate, xanthan, pullulan, dextran) by free and immobilized microbial cultures was investigated. First, conventional free-cell cultures were performed to obtain control fermentation parameters and macromolecular characteristics of exopolysaccharides. Then microbial cultures were immobilized in composite agar layer/microporous membrane structures and tested for polysaccharide production. The immobilized-cell system proved unsuitable for xanthan and pullulan production. Owing to the fouling of the microporous membrane by the polysaccharide, dextran production by immobilized Leuconostoc mesenteroides also was inefficient. More promising results have been obtained with immobilized Azotobacter vinelandii cultures. The amount of alginate produced by immobilized A. vinelandii represented about 60% of that recovered from a free-cell culture, whereas the polysaccharide yield reached 35% instead of 9% for the free counterpart. These results are compared to the macromolecular characteristics of exopolysaccharides.

Photoproduction of molecular hydrogen by Rhodospirillum rubrum immobilized in composite agar layer/microporous membrane structures

SummaryViable cells of Rhodospirillum rubrum were immobilized by entrapment in a planar agar matrix bounded by a microporous membrane filter and were tested for H2 photoproduction in synthetic waste water provided with malate and glutamate. Optimum H2 production was obtained at 15 klx for a C/N ratio of 7–8. Production rates as high as 565 mm3 H2 · h-1 per cubic centimetre of agar were recorded. The composite structures, however, suffered from high diffusion limitations which increased with the population of immobilized bacteria. The H2-evolving activity could be maintained over several months by periodically incubating the biocatalytic structures in a rich nutrient broth. No contamination of the nutrient broth due to leakage of photosynthetic organisms from the gel appeared during incubation of the structures.

Cell immobilization in composite agar layer microporous membrane structures: growth kinetics of gel-entrapped cultures and cell leakage limitation by a microporous membrane

Agar discs containing different amounts of viable Escherichia coli cells (from 10 to 106 organisms·g−1 agar) were incubated in a nutrient medium and the growth of agar-entrapped bacteria and free (released) cells was monitored. The study was repeated with composite immobilized-cell structures obtained by placing a microporous membrane filter between the gel matrix and the incubation medium. In both cases, immobilized cells grew exponentially and reached a peak concentration an order of magnitude higher than that of free (suspended) cell cultures. The maximum specific growth rates of entrapped bacteria, ranging between 0.0115 min−1 and 0.0145 min−1, i.e., slightly higher than that of control free cultures (0.011 min−1), showed no clear dependence on the initial cell loading (ICL). The microporous filter proved efficient in limiting cell leakage since it noticeably lengthened the leakage time at a given ICL. This efficiency, however, decreased at high ICL and high growth rate of immobilized organisms.

Identification of Biofilm-Associated Cluster (bac) in Pseudomonas aeruginosa Involved in Biofilm Formation and Virulence

Biofilms are prevalent in diseases caused by Pseudomonas aeruginosa, an opportunistic and nosocomial pathogen. By a proteomic approach, we previously identified a hypothetical protein of P. aeruginosa (coded by the gene pA3731) that was accumulated by biofilm cells. We report here that a ΔpA3731 mutant is highly biofilm-defective as compared with the wild-type strain. Using a mouse model of lung infection, we show that the mutation also induces a defect in bacterial growth during the acute phase of infection and an attenuation of the virulence. The pA3731 gene is found to control positively the ability to swarm and to produce extracellular rhamnolipids, and belongs to a cluster of 4 genes (pA3729–pA3732) not previously described in P. aeruginosa. Though the protein PA3731 has a predicted secondary structure similar to that of the Phage Shock Protein, some obvious differences are observed compared to already described psp systems, e.g., this unknown cluster is monocistronic and no homology is found between the other proteins constituting this locus and psp proteins. As E. coli PspA, the amount of the protein PA3731 is enlarged by an osmotic shock, however, not affected by a heat shock. We consequently named this locus bac for biofilm-associated cluster.

Diffusion in immobilized-cell agar layers: influence of microbial burden and cell morphology on the diffusion coefficients ofl-malic acid and glucose

SummaryThe diffusivities ofl-malic acid and glucose in an agar membrane entrapping small amounts ofEscherichia coli orRhodospirillum rubrum whole cells were measured using time lag (TL) and steady state (SS) methods. Diffusivities were overestimated by the SS method. For concentrations of immobilizedR. rubrum cells ranging between 104 and 109 organisms cm−3 agar (20 ng-2 mg dry weight cm−3 agar), the diffusion coefficient ofl-malic acid, determined by both methods, was related to the logarithm of the membrane cell content by a decreasing linear relationship. The diffusion coefficient of glucose obtained by TL analysis was not significantly affected by the presence in the membrane of 3 ng-0.3 mg dry wt.E. coli cm−3 agar. However, values arising from the SS method decreased linearly as a function of the amount of immobilized organisms. Membranes containingR. rubrum cells offered higher diffusional resistance tol-malic acid and glucose than those loaded with the same amount ofE. coli cells.