Hamid Soltanian-Zadeh

Correlation of VEGF and Angiopoietin Expression with Disruption of Blood–Brain Barrier and Angiogenesis after Focal Cerebral Ischemia:

In an effort to elucidate the molecular mechanisms underlying cerebral vascular alteration after stroke, the authors measured the spatial and temporal profiles of blood–brain barrier (BBB) leakage, angiogenesis, vascular endothelial growth factor (VEGF), associated receptors, and angiopoietins and receptors after embolic stroke in the rat. Two to four hours after onset of ischemia, VEGF mRNA increased, whereas angiopoietin 1 (Ang 1) mRNA decreased. Three-dimensional immunofluorescent analysis revealed spatial coincidence between increases of VEGF immunoreactivity and BBB leakage in the ischemic core. Two to 28 days after the onset of stroke, increased expression of VEGF/VEGF receptors and Ang/Tie2 was detected at the boundary of the ischemic lesion. Concurrently, enlarged and thin-walled vessels were detected at the boundary of the ischemic lesion, and these vessels developed into smaller vessels via sprouting and intussusception. Three-dimensional quantitative analysis of cerebral vessels at the boundary zone 14 days after ischemia revealed a significant (P < 0.05) increase in numbers of vessels (n = 365) compared with numbers (n = 66) in the homologous tissue of the contralateral hemisphere. Furthermore, capillaries in the penumbra had a significantly smaller diameter (4.8 ± 2.0 μm) than capillaries (5.4 ± 1.5 μm) in the homologous regions of the contralateral hemisphere. Together, these data suggest that acute alteration of VEGF and Ang 1 in the ischemic core may mediate BBB leakage, whereas upregulation of VEGF/VEGF receptors and Ang/Tie2 at the boundary zone may regulate neovascularization in ischemic brain.

Radon transform orientation estimation for rotation invariant texture analysis

This paper presents a new approach to rotation invariant texture classification. The proposed approach benefits from the fact that most of the texture patterns either have directionality (anisotropic textures) or are not with a specific direction (isotropic textures). The wavelet energy features of the directional textures change significantly when the image is rotated. However, for the isotropic images, the wavelet features are not sensitive to rotation. Therefore, for the directional textures, it is essential to calculate the wavelet features along a specific direction. In the proposed approach, the Radon transform is first employed to detect the principal direction of the texture. Then, the texture is rotated to place its principal direction at 0 degrees. A wavelet transform is applied to the rotated image to extract texture features. This approach provides a features space with small intraclass variability and, therefore, good separation between different classes. The performance of the method is evaluated using three texture sets. Experimental results show the superiority of the proposed approach compared with some existing methods.

Multiwavelet grading of pathological images of prostate

Histological grading of pathological images is used to determine the level of malignancy of cancerous tissues. This is a very important task in prostate cancer prognosis, since it is used for treatment planning. If infection of cancer is not rejected by noninvasive diagnostic techniques like magnetic resonance imaging, computed tomography scan, and ultrasound, then biopsy specimens of tissue are tested. For prostate, biopsied tissue is stained by hematoxyline and eosine method and viewed by pathologists under a microscope to determine its histological grade. Human grading is very subjective due to interobserver and intraobserver variations and in some cases difficult and time-consuming. Thus, an automatic and repeatable technique is needed for grading. The Gleason grading system is the most common method for histological grading of prostate tissue samples. According to this system, each cancerous specimen is assigned one of five grades. Although some automatic systems have been developed for analysis of pathological images, Gleason grading has not yet been automated; the goal of this research is to automate it. To this end, we calculate energy and entropy features of multiwavelet coefficients of the image. Then, we select most discriminative features by simulated annealing and use a k-nearest neighbor classifier to classify each image to appropriate grade (class). The leaving-one-out technique is used for error rate estimation. We also obtain the results using features extracted by wavelet packets and co-occurrence matrices and compare them with the multiwavelet method. Experimental results show the superiority of the multiwavelet transforms compared with other techniques. For multiwavelets, critically sampled preprocessing outperforms repeated-row preprocessing and has less sensitivity to noise for second level of decomposition. The first level of decomposition is very sensitive to noise and, thus, should not be used for feature extraction. The best multiwavelet method grades prostate pathological images correctly 97% of the time.

Comparison of multiwavelet, wavelet, Haralick, and shape features for microcalcification classification in mammograms

We present an evaluation and comparison of the performance of four different texture and shape feature extraction methods for classification of benign and malignant microcalcifications in mammograms. For 103 regions containing microcalcification clusters, texture and shape features were extracted using four approaches: conventional shape quantifiers; co-occurrence-based method of Haralick; wavelet transformations; and multi-wavelet transformations. For each set of features, most discriminating features and their optimal weights were found using real-valued and binary genetic algorithms (GA) utilizing a k-nearest-neighbor classifier and a malignancy criterion for generating ROC curves for measuring the performance. The best set of features generated areas under the ROC curve ranging from 0.84 to 0.89 when using real-valued GA and from 0.83 to 0.88 when using binary GA. The multi-wavelet method outperformed the other three methods, and the conventional shape features were superior to the wavelet and Haralick features.

Rotation-invariant multiresolution texture analysis using Radon and wavelet transforms

A new rotation-invariant texture-analysis technique using Radon and wavelet transforms is proposed. This technique utilizes the Radon transform to convert the rotation to translation and then applies a translation-invariant wavelet transform to the result to extract texture features. A k-nearest neighbors classifier is employed to classify texture patterns. A method to find the optimal number of projections for the Radon transform is proposed. It is shown that the extracted features generate an efficient orthogonal feature space. It is also shown that the proposed features extract both of the local and directional information of the texture patterns. The proposed method is robust to additive white noise as a result of summing pixel values to generate projections in the Radon transform step. To test and evaluate the method, we employed several sets of textures along with different wavelet bases. Experimental results show the superiority of the proposed method and its robustness to additive white noise in comparison with some recent texture-analysis methods.

IMAGE RETRIEVAL BASED ON SHAPE SIMILARITY BY EDGE ORIENTATION AUTOCORRELOGRAM

Abstract This paper introduces a new feature vector for shape-based image indexing and retrieval. This feature classifies image edges based on two factors: their orientations and correlation between neighboring edges. Hence it includes information of continuous edges and lines of images and describes major shape properties of images. This scheme is effective and robustly tolerates translation, scaling, color, illumination, and viewing position variations. Experimental results show superiority of proposed scheme over several other indexing methods. Averages of precision and recall rates of this new indexing scheme for retrieval as compared with traditional color histogram are 1.99 and 1.59 times, respectively. These ratios are 1.26 and 1.04 compared to edge direction histogram.

Time course of ADCW changes in ischemic stroke : Beyond the human eye!

BACKGROUND AND PURPOSE Using newly developed computerized image analysis, we studied the heterogeneity of apparent diffusion coefficient of water (ADCw) values in human ischemic stroke within 10 hours of onset. METHODS Echo-planar trace diffusion-weighted images from 9 patients with focal cortical ischemic stroke were obtained within 10 hours of symptom onset. An Iterative Self-Organizing Data Analysis (ISODATA) clustering algorithm was implemented to segment different tissue types with a series of DW images. ADCw maps were calculated from 4 DW images on a pixel-by-pixel basis. The segmented zones within the lesion were characterized as low, pseudonormal, or high, expressed as a ratio of the mean+/-SD of ADCw of contralateral noninvolved tissue. RESULTS The average ADCW in the ischemic stroke region within 10 hours of onset was significantly depressed compared with homologous contralateral tissue (626.6+/-76.8 versus 842.9+/-60.4x10(-6) mm2/s; P<0.0001). Nevertheless, ISODATA segmentation yielded multiple zones within the stroke region that were characterized as low, pseudonormal, and high. The mean proportion of low:pseudonormal:high was 72%:20%:8%. CONCLUSIONS Despite low average ADCW, computer-assisted segmentation of DW MRI detected heterogeneous zones within ischemic lesions corresponding to low, pseudonormal, and high ADCw not visible to the human eye. This supports acute elevation of ADCw in human ischemic stroke and, accordingly, different temporal rates of tissue evolution toward infarction.

Registration and warping of magnetic resonance images to histological sections.

We present a method for coregistration and warping of magnetic resonance images (MRI) to histological sections for comparison purposes. This methodology consists of a modified head and hat surface-based registration algorithm followed by a new automated warping approach using nonlinear thin plate splines to compensate for distortions between the data sets. To test the methodology, 15 male Wistar rats were subjected to focal cerebral ischemia via permanent occlusion of the middle cerebral artery. The MRI images were acquired in separate groups of animals at 16-24 h (n = 9) and 48-168 h (n = 6) postocclusion. After imaging, animals were immediately sacrificed and hematoxylin- and eosin-stained brain sections were obtained for histological analysis. The MRI was coregistered and warped to histological sections. The MRI lesion areas were defined using the Eigenimage (EI) filter technique. The EI is a linear filter that maximizes the projection of a desired tissue (ischemic tissue) while it minimizes the projection of undesired tissues (nonischemic tissue) onto a composite image called an EI. When using coregistration without warping the MRI lesion area demonstrated poor correlation (r = 0.55, p > 0.01) with a percent difference between the two lesion areas of 22.5% +/- 10.8%. After warping, the MRI and histology had significant correlation (r = 0.97, p < 0.01) and a decreased percent difference of 5.56% +/- 4.31%. This methodology is simple and robust for coregistration and warping of MRI to histological sections and can be utilized in many applications for comparison of MRI to histological data.

A three-dimensional deformable model for segmentation of human prostate from ultrasound images

Segmentation of human prostate from ultrasound (US) images is a crucial step in radiation therapy, especially in real-time planning for US image-guided prostate seed implant. This step is critical to determine the radioactive seed placement and to ensure the adequate dose coverage of prostate. However, due to the low contrast of prostate and very low signal-to-noise ratio in US images, this task remains as an obstacle. The manual segmentation of this object is time consuming and highly subjective. In this work, we have proposed a three-dimensional (3D) deformable surface model for automatic segmentation of prostate. The model has a discrete structure made from a set of vertices in the 3D space that form triangle facets. The model converges from an initial shape to its equilibrium iteratively, by a weighted sum of the internal and external forces. Internal forces are based on the local curvature of the surface and external forces are extracted from the volumetric image data by applying an appropriate edge filter. We have also developed a method for initialization of the model from a few initial contours that are drawn on different slices. During the deformation, a resampling procedure is used to maintain the resolution of the model. The entire model is applied in a multiscale scheme, which increases the robustness and speed, and guarantees a better convergence. The model is tested on real clinical data and initial results are very promising.

Quantification of superparamagnetic iron oxide (SPIO)‐labeled cells using MRI

To show the feasibility of using magnetic resonance imaging (MRI) to quantify superparamagnetic iron oxide (SPIO)‐labeled cells.