Hanan I. Malkawi

Effects of Arbuscular Mycorrhizal Fungi and Phosphorus Fertilization on Growth and Nutrient Uptake of Barley Grown on Soils with Different Levels of Salts

Abstract Greenhouse experiment was conducted to evaluate the effect of arbuscular mycorrhizal fungi (AMF) on plant growth, and nutrient uptake in saline soils with different salt and phosphorus (P) levels. The following treatments were included in this experiment: (i) Soil A, with salt level of 16.6 dS m−1 and P level of 8.4 mg kg−1; (ii) Soil B, with salt level of 6.2 dS m−1 and P level of 17.5 mg kg−1; and (iii) Soil C, with salt level of 2.4 dS m−1 and P level of 6.5 mg kg−1. Soils received no (control) or 25 mg P kg−1 soil as triple super phosphate and were either not inoculated (control) or inoculated with a mixture of AM (AM1) and/or with Glomus intraradices (AM2). All pots were amended with 125 mg N kg−1 soil as ammonium sulfate. Barley (Hordeum vulgar L., cv. “ACSAD 6”) was grown for five weeks. Plants grown on highly saline soils were severely affected where the dry weight was significantly lower than plants growing on moderately and low saline soils. The tiller number and the plant height were also lower under highly saline condition. The reduced plant growth under highly saline soils is mainly attributed to the negative effect of the high osmotic potential of the soil solution of the highly saline soils which tend to reduce the nutrient and water uptake as well as reduce the plant root growth. Both the application of P fertilizers and the soil inoculation with either inoculum mixture or G. intraradices increased the dry weight and the height of the plants but not the tiller number. The positive effect of P application on plant growth was similar to the effect of AM inoculation. Phosphorus concentration in the plants was higher in the mycorrhizal plant compared to the non mycorrhizal ones when P was not added. On the other hand, the addition of P increased the P concentration in the plants of the non mycorrhizal plants to as high as that of the mycorrhizal plants. Iron (Fe) and zinc (Zn) uptake increased with AM inoculation. The addition of P had a positive effect on micronutrient uptake in soil with low level of soil P, but had a negative effect in soil with high level of soil P. Micronutrient uptake decreases with increasing soil salinity level. Inoculation with AMF decreases sodium (Na) concentration in plants grown in soil of the highest salinity level but had no effect when plants were grown in soil with moderate or low salinity level. The potassium (K) concentration was not affected by any treatment while the K/Na ratio was increased by AM inoculation only when plant were grown in soil of the highest salinity level.

Bacterial population and biodegradation potential in chronically crude oil-contaminated marine sediments are strongly linked to temperature

Two of the largest crude oil-polluted areas in the world are the semi-enclosed Mediterranean and Red Seas, but the effect of chronic pollution remains incompletely understood on a large scale. We compared the influence of environmental and geographical constraints and anthropogenic forces (hydrocarbon input) on bacterial communities in eight geographically separated oil-polluted sites along the coastlines of the Mediterranean and Red Seas. The differences in community compositions and their biodegradation potential were primarily associated (P < 0.05) with both temperature and chemical diversity. Furthermore, we observed a link between temperature and chemical and biological diversity that was stronger in chronically polluted sites than in pristine ones where accidental oil spills occurred. We propose that low temperature increases bacterial richness while decreasing catabolic diversity and that chronic pollution promotes catabolic diversification. Our results further suggest that the bacterial populations in chronically polluted sites may respond more promptly in degrading petroleum after accidental oil spills.

Allochthonous bioaugmentation in ex situ treatment of crude oil-polluted sediments in the presence of an effective degrading indigenous microbiome

Oil-polluted sediment bioremediation depends on both physicochemical and biological parameters, but the effect of the latter cannot be evaluated without the optimization of the former. We aimed in optimizing the physicochemical parameters related to biodegradation by applying an ex-situ landfarming set-up combined with biostimulation to oil-polluted sediment, in order to determine the added effect of bioaugmentation by four allochthonous oil-degrading bacterial consortia in relation to the degradation efficiency of the indigenous community. We monitored hydrocarbon degradation, sediment ecotoxicity and hydrolytic activity, bacterial population sizes and bacterial community dynamics, characterizing the dominant taxa through time and at each treatment. We observed no significant differences in total degradation, but increased ecotoxicity between the different treatments receiving both biostimulation and bioaugmentation and the biostimulated-only control. Moreover, the added allochthonous bacteria quickly perished and were rarely detected, their addition inducing minimal shifts in community structure although it altered the distribution of the residual hydrocarbons in two treatments. Therefore, we concluded that biodegradation was mostly performed by the autochthonous populations while bioaugmentation, in contrast to biostimulation, did not enhance the remediation process. Our results indicate that when environmental conditions are optimized, the indigenous microbiome at a polluted site will likely outperform any allochthonous consortium.

Biogeographical diversity of leaf-associated microbial communities from salt-secreting Tamarix trees of the Dead Sea region.

The leaves of Tamarix, a salt-secreting desert tree, form an extreme niche that harbors a unique microbial community. In view of the global distribution of this tree, its island-like phyllosphere is highly suitable for studying microbial diversity along geographical gradients. Here we present an analysis of microbial community diversity using leaf surface samples collected at six different sites, on both sides of the Dead Sea, over a period of one year. Biodiversity analysis of denaturing gradient gel electrophoresis (DGGE) patterns of the bacterial 16S rRNA gene revealed a significant degree of bacterial community similarity within trees sampled at the same site, much higher than the similarity between trees from different geographical locations. Statistical analysis indicated that the degree of similarity was negatively correlated with the distance between sampling sites, and that a weak correlation existed between diversity and leaf pH.

ULIXES, unravelling and exploiting Mediterranean Sea microbial diversity and ecology for xenobiotics’ and pollutants’ clean up

The civilizations in the Mediterranean Sea have deeply changed the local environment, especially with the extraction of subsurface oil and gas, their refinery and transportation. Major environmental impacts are affecting all the sides of the basin with actual and potential natural and socio-economic problems. Events like the recent BP’s oil disaster in the Gulf of Mexico would have a tremendous impact on a close basin like the Mediterranean Sea. The recently EU-funded project ULIXES (http://www.ulixes.unimi.it/) aims to unravel, categorize, catalogue, exploit and manage the microbial diversity available in the Mediterranean Sea for addressing bioremediation of polluted marine sites. The rationale of the project is based on the multiple diverse environmental niches of the Mediterranean Sea and the huge range of microorganisms inhabiting therein. Microbial consortia and their ecology, their components or products are used for designing novel pollutant- and site-tailored bioremediation approaches. ULIXES exploits microbial resource mining by the isolation of novel microorganisms as well as by novel advanced ‘meta-omics’ technologies for solving pollution of three major high priority pollutant classes, petroleum hydrocarbons, chlorinated compounds and heavy metals. A network of twelve European and Southern Mediterranean partners is exploring the microbial diversity and ecology associated to a large set of polluted environmental matrices including seashore sands, lagoons, harbors and deep-sea sediments, oil tanker shipwreck sites, as well as coastal and deep sea natural sites where hydrocarbon seepages occur. The mined collections are exploited for developing novel bioremediation processes to be tested in ex situ and in situ field bioremediation trials.

Molecular identification of Salmonella isolates from poultry and meat products in Irbid City, Jordan

The sensitivity and accuracy of molecular diagnosis of Salmonella from meat and poultry products using polymerase chain reaction (PCR) was compared with conventional microbiological methods. A total of 212 samples representing the most frequently used fresh and frozen meat and poultry products (whole, cut, ground, and processed) were collected from different locations within the city of Irbid. DNA was extracted directly from each food sample and amplified using Salmonella-specific primers. Samples were also analysed using conventional microbiological methods for the presence of Salmonella spp. Results showed that Salmonella was detected in 185 samples out of 212 (87%) by PCR technique, while 172 (81%) samples were detected Salmonella positive by conventional microbiological methods. On the other hand, 27 (12.7%) samples were negative by PCR and 40 (18.8%) samples were negative by conventional microbiological methods. PCR assay proved to be an effective method for Salmonella detection in meat and poultry products with high specificity and sensitivity and more importantly a less time-consuming procedure. Using PCR, Salmonella spp. detection could be achieved within 24–36 h compared to 3–8 days for the conventional microbiological methods.