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Dive into the research topics where Hanne S. Antila is active.

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Featured researches published by Hanne S. Antila.


Soft Matter | 2015

The influence of ionic strength and mixing ratio on the colloidal stability of PDAC/PSS polyelectrolyte complexes

Yanpu Zhang; Erol Yildirim; Hanne S. Antila; Luis D. Valenzuela; Maria Sammalkorpi; Jodie L. Lutkenhaus

Polyelectrolyte complexes (PECs) form by mixing polycation and polyanion solutions together, and have been explored for a variety of applications. One challenge for PEC processing and application is that under certain conditions the as-formed PECs aggregate and precipitate out of suspension over the course of minutes to days. This aggregation is governed by several factors such as electrostatic repulsion, van der Waals attractions, and hydrophobic interactions. In this work, we explore the boundary between colloidally stable and unstable complexes as it is influenced by polycation/polyanion mixing ratio and ionic strength. The polymers examined are poly(diallyldimethylammonium chloride) (PDAC) and poly(sodium 4-styrenesulfonate) (PSS). Physical properties such as turbidity, hydrodynamic size, and zeta potential are investigated upon complex formation. We also perform detailed molecular dynamics simulations to examine the structure and effective charge distribution of the PECs at varying mixing ratios and salt concentrations to support the experimental findings. The results suggest that the colloidally stable/unstable boundary possibly marks the screening effects from added salt, resulting in weakly charged complexes that aggregate. At higher salt concentrations, the complexes initially form and then gradually dissolve into solution.


Journal of Physical Chemistry B | 2014

Polyelectrolyte Decomplexation via Addition of Salt: Charge Correlation Driven Zipper

Hanne S. Antila; Maria Sammalkorpi

We report the first atomic scale studies of polyelectrolyte decomplexation. The complex between DNA and polylysine is shown to destabilize and spontaneously open in a gradual, reversible zipper-like mechanism driven by an increase in solution salt concentration. Divalent CaCl2 is significantly more effective than monovalent NaCl in destabilizing the complex due to charge correlations and water binding capability. The dissociation occurs accompanied by charge reversal in which charge correlations and ion binding chemistry play a key role. Our results are in agreement with experimental work on complex dissociation but in addition show the underlying microstructural correlations driving the behavior. Comparison of our full atomic level detail and dynamics results with theoretical works describing the PEs as charged, rigid rods reveals that although charge correlation involved theories provide qualitatively similar responses, considering also specific molecular chemistry and molecular level water contributions provides a more complete understanding of PE complex stability and dynamics. The findings may facilitate controlled release in gene delivery and more in general tuning of PE membrane permeability and mechanical characteristics through ionic strength.


Methods of Molecular Biology | 2013

Polarizable Force Fields

Hanne S. Antila; Emppu Salonen

This chapter provides an overview of the most common methods for including an explicit description of electronic polarization in molecular mechanics force fields: the induced point dipole, shell, and fluctuating charge models. The importance of including polarization effects in biomolecular simulations is discussed, and some of the most important achievements in the development of polarizable biomolecular force fields to date are highlighted.


Journal of Physical Chemistry B | 2017

Role of Salt and Water in the Plasticization of PDAC/PSS Polyelectrolyte Assemblies

Ran Zhang; Yanpu Zhang; Hanne S. Antila; Jodie L. Lutkenhaus; Maria Sammalkorpi

In this work, we investigate the effect of salt and water on plasticization and thermal properties of hydrated poly(diallyldimethylammonium chloride) (PDAC) and poly(sodium 4-styrenesulfonate) (PSS) assemblies via molecular dynamics simulations and modulated differential scanning calorimetry (MDSC). Commonly, both water and salt are considered to be plasticizers of hydrated polyelectrolyte assemblies. However, the simulation results presented here show that while water has a plasticizing effect, salt can also have an opposite effect on the PE assemblies. On one hand, the presence of salt ions provides additional free volume for chain motion and weakens PDAC-PSS ion pairing due to electrostatic screening, which contributes toward plasticization of the complex. On the other hand, salt ions bind water in their hydration shells, which decreases water mobility and reduces the plasticization by hydration. Our MDSC results connect the findings to macroscopic PE plasticization and the glass-transition-like thermal transition Ttr under controlled PE hydration and salt content. This work identifies and characterizes the dual nature of salt both as plasticizer and hardener of PE assemblies and maps the interconnection of the influence of salt with the degree of hydration in the system. Our findings provide insight into the existing literature data, bear fundamental significance in understanding of hydrated polyelectrolyte assemblies, and suggest a direct means to tailor the mechanical characteristics of PE assemblies via interplay of water and salt.


Physical Review E | 2016

Interaction modes between asymmetrically and oppositely charged rods.

Hanne S. Antila; Paul R. Van Tassel; Maria Sammalkorpi

The interaction of oppositely and asymmetrically charged rods in salt-a simple model of (bio)macromolecular assembly-is observed via simulation to exhibit two free energy minima, separated by a repulsive barrier. In contrast to similar minima in the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory, the governing mechanism includes electrostatic attraction at large separation, osmotic repulsion at close range, and depletion attraction near contact. A model accounting for ion condensation and excluded volume is shown to be superior to a mean-field treatment in predicting the effect of charge asymmetry on the free-energy profile.


Journal of Physical Chemistry B | 2015

Ewald Electrostatics for Mixtures of Point and Continuous Line Charges.

Hanne S. Antila; Paul R. Van Tassel; Maria Sammalkorpi

Many charged macro- or supramolecular systems, such as DNA, are approximately rod-shaped and, to the lowest order, may be treated as continuous line charges. However, the standard method used to calculate electrostatics in molecular simulation, the Ewald summation, is designed to treat systems of point charges. We extend the Ewald concept to a hybrid system containing both point charges and continuous line charges. We find the calculated force between a point charge and (i) a continuous line charge and (ii) a discrete line charge consisting of uniformly spaced point charges to be numerically equivalent when the separation greatly exceeds the discretization length. At shorter separations, discretization induces deviations in the force and energy, and point charge-point charge correlation effects. Because significant computational savings are also possible, the continuous line charge Ewald method presented here offers the possibility of accurate and efficient electrostatic calculations.


Journal of Computational Chemistry | 2015

On combining Thole's induced point dipole model with fixed charge distributions in molecular mechanics force fields

Hanne S. Antila; Emppu Salonen

The Thole induced point dipole model is combined with three different point charge fitting methods, Merz–Kollman (MK), charges from electrostatic potentials using a grid (CHELPG), and restrained electrostatic potential (RESP), and two multipole algorithms, distributed multipole analysis (DMA) and Gaussian multipole model (GMM), which can be used to describe the electrostatic potential (ESP) around molecules in molecular mechanics force fields. This is done to study how the different methods perform when intramolecular polarizability contributions are self‐consistently removed from the fitting done in the force field parametrization. It is demonstrated that the polarizable versions of the partial charge models provide a good compromise between accuracy and computational efficiency in describing the ESP of small organic molecules undergoing conformational changes. For the point charge models, the inclusion of polarizability reduced the the average root mean square error of ESP over the test set by 4–10%.


Physical Chemistry Chemical Physics | 2015

Chemistry specificity of DNA–polycation complex salt response: a simulation study of DNA, polylysine and polyethyleneimine

Hanne S. Antila; Marc Härkönen; Maria Sammalkorpi


Springer Science + Business Media B.V. | 2012

Biomolecular Simulations : Methods and Protocols - Methods in Molecular Biology

Hanne S. Antila; Emppu Salonen


Journal of Chemical Physics | 2017

Repulsion between oppositely charged rod-shaped macromolecules: Role of overcharging and ionic confinement

Hanne S. Antila; Paul R. Van Tassel; Maria Sammalkorpi

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Ran Zhang

Chinese Academy of Sciences

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Erik Luijten

Northwestern University

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