Hassan H. Abdallah

chimeric design, synthesis, and biological assays of a new nonpeptide insulin-mimetic vanadium compound to inhibit protein tyrosine phosphatase 1B

Prior to its total synthesis, a new vanadium coordination compound, called TSAG0101, was computationally designed to inhibit the enzyme protein tyrosine phosphatase 1B (PTP1B). The PTP1B acts as a negative regulator of insulin signaling by blocking the active site where phosphate hydrolysis of the insulin receptor takes place. TSAG001, [VVO2(OH)(picolinamide)], was characterized by infrared (IR) and nuclear magnetic resonance (NMR) spectroscopy; IR: ν/cm−1 3,570 (NH), 1,627 (C=O, coordinated), 1,417 (C–N), 970/842 (O=V=O), 727 δ̣ (pyridine ring); 13C NMR: 5 bands between 122 and 151 ppm and carbonyl C shifted to 180 ppm; and 1H NMR: 4 broad bands from 7.6 to 8.2 ppm and NH2 shifted to 8.8 ppm. In aqueous solution, in presence or absence of sodium citrate as a biologically relevant and ubiquitous chelator, TSAG0101 undergoes neither ligand exchange nor reduction of its central vanadium atom during 24 hours. TSAG0101 shows blood glucose lowering effects in rats but it produced no alteration of basal- or glucose-induced insulin secretion on β cells during in vitro tests, all of which excludes a direct mechanism evidencing the extrapancreatic nature of its activity. The lethal dose (LD50) of TSAG0101 was determined in Wistar mice yielding a value of 412 mg/kg. This value is one of the highest among vanadium compounds and classifies it as a mild toxicity agent when compared with literature data. Due to its nonsubstituted, small-sized scaffold design, its remarkable complex stability, and low toxicity; TSAG0101 should be considered as an innovative insulin-mimetic principle with promising properties and, therefore, could become a new lead compound for potential nonpeptide PTP1B inhibitors in antidiabetic drug research. In view of the present work, the inhibitory concentration (IC50) and extended solution stability will be tested.

Journey through the potential energy surfaces for the isomerization and decomposition reactions of the telluroformaldehyde analogues: H2A═Te and HFA═Te (A = C, Si, and Ge).

The unavailability of monomeric heavy ketone analogues has been ascribed to the evanescence of the very reactive A═E double bond (A and E are the heavier group 14 and group 16 elements, respectively). Can the isolation of any of the monomeric telluro-ketones be assisted by an energetic favorability on its potential energy surface (PES)? In this light, the reaction pathways for the isomerization and decomposition reactions of H2A═Te and HFA═Te (A = C, Si, and Ge) molecules on their singlet state PES have been studied using second-order Møller-Plesset perturbation theory (MP2). The barrier heights reported suggest that telluroformaldehyde, silanetellone, and germatellone are kinetically more resistant to unimolecular reactions than the corresponding lighter chalcogen analogues. However, upon replacing a hydrogen atom by fluorine, the barrier heights of most of the isomerization and decomposition reactions are lowered. Among the unimolecular reactions studied for the H2A═Te and HFA═Te (A = C, Si, and Ge) molecules, the decomposition of cis-FGeTeH into HF and GeTe is found to be the most facile reaction, with a barrier height of only 4.6 kcal/mol. We also predict the ground state telluro-ketones to be viable molecules, as they have no imaginary vibrational frequencies and their lowest vibrational frequencies are always >100 cm(-1). In view of the scarcity of information on the chemistry of the mentioned telluro-ketones, the molecular parameters of various isomers and decomposition products have been reported, and should be useful for future experimental investigations.

Density functional theory and ab initio studies of the structure and energetics of digallium tetraoxide, Ga2O4, in the gas phase.

A systematic investigation on the neutral and anionic digallium tetraoxide, Ga(2)O(4) has been carried out by using density functional theory (DFT), second-order Møller-Plesset perturbation theory (MP2), and the coupled cluster approach with single and double substitutions and a perturbative treatment of the triple excitations [CCSD(T)]. The geometry of neutral Ga(2)O(4) has been proposed earlier, from an experimental study, to adopt a D(2d) symmetry (J. Phys. Chem. 1979, 83, 656). However, the current research reveals that, out of the several isomers considered for neutral and anionic digallium tetraoxide, the (3)B(1u) and (2)B(3g) of the planar D(2h) geometry (7a-D(2h)) are the lowest-energy states for Ga(2)O(4) and Ga(2)O(4)(-). Our computations rule out the D(2d) geometry (3-D(2d)) as a viable contender for neutral Ga(2)O(4). The (3)B(2) (3-D(2d)) state is located above the (3)B(1u) (7-D(2h)) state by at least 4.26 eV. The energies of the low lying states, geometrical parameters, and energetic features (VEDE, AEDE, and AEA) are reported. The AEA of Ga(2)O(4) is calculated to be 3.94 eV (B3LYP), 3.24 eV (MP2), 3.42 eV [CCSD(T)//B3LYP], and 3.38 eV [CCSD(T)//MP2], respectively. In addition, the dissociation energy, D(e), for the process Ga(2)O(4) ((3)B(1u)) → 2GaO(2) ((2)A(2)) is 3.59 eV (B3LYP), 5.08 eV (MP2), 4.82 eV [CCSD(T)//B3LYP], and 4.80 eV [CCSD(T)//MP2]. The results obtained in this work are critically analyzed, discussed, and compared with those of the analogous metal oxides.

Chemical reaction of soybean flavonoids with DNA: a computational study using the implicit solvent model.

Genistein, daidzein, glycitein and quercetin are flavonoids present in soybean and other vegetables in high amounts. These flavonoids can be metabolically converted to more active forms, which may react with guanine in the DNA to form complexes and can lead to DNA depurination. We assumed two ultimate carcinogen forms of each of these flavonoids, diol epoxide form and diketone form. Density functional theory (DFT) and Hartree-Fock (HF) methods were used to study the reaction thermodynamics between active forms of flavonoids and DNA guanine. Solvent reaction field method of Tomasi and co-workers and the Langevin dipoles method of Florian and Warshel were used to calculate the hydration free energies. Activation free energy for each reaction was estimated using the linear free energy relation. Our calculations show that diol epoxide forms of flavonoids are more reactive than the corresponding diketone forms and are hence more likely flavonoid ultimate carcinogens. Genistein, daidzein and glycitein show comparable reactivity while quercetin is less reactive toward DNA.

Investigation of interaction hydrogen sulfide with (5,0) and (5,5) single-wall carbon nanotubes by density functional theory method

Herein, the interaction of hydrogen sulfide with inside and outside single-wall carbon nanotube of (5,0) and (5,5) is investigated using density functional theory at B3LYP/6-31G* level of theory in the gaseous phase by Gaussian 09. The adsorption energies, thermodynamic properties, highest occupied molecular orbital, lowest unoccupied molecular orbital, energy gaps, and partial charges of the interacting atoms are also studied during two kinds of rotation of hydrogen sulfide (H2S) molecules as vertical and horizontal to the main axes of the nanotube. For these systems, the binding energy of H2S-single-wall carbon nanotubes is low and the process is thermodynamically near-simultaneous.

Germylenes: Structures, Electron Affinities, and Singlet−Triplet Gaps of the Conventional XGeCY3 (X = H, F, Cl, Br, and I; Y = F and Cl) Species and the Unexpected Cyclic XGeCY3 (Y = Br and I) Systems

A systematic investigation of the X-Ge-CY(3) (X = H, F, Cl, Br, and I; Y = F, Cl, Br, and I) species is carried out using density functional theory. The basis sets used for all atoms (except iodine) in this work are of double-ζ plus polarization quality with additional s- and p-type diffuse functions, and denoted DZP++. Vibrational frequency analyses are performed to evaluate zero-point energy corrections and to determine the nature of the stationary points located. Predicted are four different forms of neutral-anion separations: adiabatic electron affinity (EA(ad)), zero-point vibrational energy corrected EA(ad(ZPVE)), vertical electron affinity (EA(vert)), and vertical detachment energy (VDE). The electronegativity (χ) reactivity descriptor for the halogens (X = F, Cl, Br, and I) is used as a tool to assess the interrelated properties of these germylenes. The topological position of the halogen atom bound to the divalent germanium center is well correlated with the trend in the electron affinities and singlet-triplet gaps. For the expected XGeCY(3) structures (X = H, F, Cl, Br, and I; Y = F and Cl), the predicted trend in the electron affinities is well correlated with simpler germylene derivatives (J. Phys. Chem. A 2009, 113, 8080). The predicted EA(ad(ZPVE)) values with the BHLYP functional range from 1.66 eV (FGeCCl(3)) to 2.20 eV (IGeCF(3)), while the singlet-triplet splittings range from 1.28 eV (HGeCF(3)) to 2.22 eV (FGeCCl(3)). The XGeCY(3) (Y = Br and I) species are most often characterized by three-membered cyclic systems involving the divalent germanium atom, the carbon atom, and a halogen atom.

Diaqua­bis­(hydrogen tartrato)copper(II) dihydrate

The title complex, [Cu(C4H5O6)2(H2O)2]·2H2O, contains a CuII ion lying on an inversion centre. The coordination geometry of the CuII ion is a distorted octahedron with four O atoms from two hydrogen tartrate ions occupying the equatorial positions and two O atoms from two coordinated water molecules occupying the axial positions. In the crystal structure, intermolecular O—H⋯O and C—H⋯O hydrogen bonds link the molecules into a three-dimensional network.

Quantum mechanical study of the syn-anti isomerisation of 2-tellurophenecarboaldehyde: Vive la différence

The syn- and anti-conformers of 2-tellurophenecarboaldehyde are studied in the gas phase. A transition state is also modelled for the syn-anti isomerisation. Computations are done using different methods namely HF, DFT/B3LYP, MP2 and CCSD(T). The basis set used for all atoms is 6-311++G(d,p) except that LanL2DZ ECP is used for tellurium atom only. The optimised molecular structures and related structural parameters of these conformers are reported. The energy differences between the syn- and anti-conformers, associated rotational barriers and thermodynamic parameters are derived from the computations. The infrared frequencies of these conformers are also reported with appropriate assignments. This study is extended to include solvent effect and the conformers are fully optimised (DFT/B3LYP) using the integral equation formalism in the Polarisable Continuum model. In the gas phase, the theoretical rate constant for the unimolecular conversion, anti conformer to transition state, is reported for the first time; DFT/B3LYP (4.82×10(30) s(-1)) and MP2 (7.81×10(30) s(-1)). It is found that the structures are not much affected by the solvents but energy difference increases and rotational barrier decreases. The results indicate that there is a close agreement with the predictions from the different theoretical methods. The results obtained are critically analysed and compared with the furan, thiophene and selenophene analogues. A major factor affecting conformational preference and the mole fraction is the charge on the chalcogen heteroatom in the ring. An interesting outcome of this work is that in both the gas phase and solutions, the syn conformer is more stable and exists almost exclusively.

2,6-Diamino­pyridinium 2-carb­oxy­benzoate

In the crystal of the title molecular salt, C5H8N3 +·C8H5O4 −, the diaminopyridine cation and the phthalate anion are linked by a pair of N—H⋯O hydrogen bonds. Within the phthalate anion, an almost symmetrical O—H⋯O hydrogen bond is observed. The ion pairs are linked by further N—H⋯O hydrogen bonds, generating a two-dimensional network lying parallel to (10).

Monoclinic polymorph of poly[aqua(μ4-hydrogen tartrato)sodium]

A monoclinic polymorph of the title compound, [Na(C4H5O6)(H2O)]n, is reported and complements an orthorhombic form [Kubozono, Hirano, Nagasawa, Maeda & Kashino (1993 ▶). Bull. Chem. Soc. Jpn, 66, 2166–2173]. The asymmetric unit contains a hydrogen tartrate anion, an Na+ cation and a water molecule. The Na+ ion is surrounded by seven O atoms derived from one independent and three symmetry-related hydrogen tartrate anions, and a water molecule, forming a distorted pentagonal–bipyramidal geometry. Independent units are linked via a pair of intermolecular bifurcated O—H⋯O acceptor bonds, generating an R 2 1(6) ring motif to form polymeric two-dimensional arrays parallel to the (100) plane. In the crystal packing, the arrays are linked by adjacent ring motifs, together with additional intermolecular O—H⋯O interactions, into a three-dimensional network.