Hazel A. Oxenford

Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral ‘bleaching’ event

Reef corals are sentinels for the adverse effects of rapid global warming on the planets ecosystems. Warming sea surface temperatures have led to frequent episodes of bleaching and mortality among corals that depend on endosymbiotic micro-algae (Symbiodinium) for their survival. However, our understanding of the ecological and evolutionary response of corals to episodes of thermal stress remains inadequate. For the first time, we describe how the symbioses of major reef-building species in the Caribbean respond to severe thermal stress before, during and after a severe bleaching event. Evidence suggests that background populations of Symbiodinium trenchi (D1a) increased in prevalence and abundance, especially among corals that exhibited high sensitivity to stress. Contrary to previous hypotheses, which posit that a change in symbiont occurs subsequent to bleaching, S. trenchi increased in the weeks leading up to and during the bleaching episode and disproportionately dominated colonies that did not bleach. During the bleaching event, approximately 20 per cent of colonies surveyed harboured this symbiont at high densities (calculated at less than 1.0% only months before bleaching began). However, competitive displacement by homologous symbionts significantly reduced S. trenchis prevalence and dominance among colonies after a 2-year period following the bleaching event. While the extended duration of thermal stress in 2005 provided an ecological opportunity for a rare host-generalist symbiont, it remains unclear to what extent the rise and fall of S. trenchi was of ecological benefit or whether its increased prevalence was an indicator of weakening coral health.

The Relative Significance of Host–Habitat, Depth, and Geography on the Ecology, Endemism, and Speciation of Coral Endosymbionts in the Genus Symbiodinium

Dinoflagellates in the genus Symbiodinium are among the most abundant and important group of eukaryotic microbes found in coral reef ecosystems. Recent analyses conducted on various host cnidarians indicated that Symbiodinium assemblages in the Caribbean Sea are genetically and ecologically diverse. In order to further characterize this diversity and identify processes important to its origins, samples from six orders of Cnidaria comprising 45 genera were collected from reef habitats around Barbados (eastern Caribbean) and from the Mesoamerican barrier reef off the coast of Belize (western Caribbean). Fingerprinting of the ribosomal internal transcribed spacer 2 identified 62 genetically different Symbiodinium. Additional analyses of clade B Symbiodinium using microsatellite flanker sequences unequivocally characterized divergent lineages, or “species,” within what was previously thought to be a single entity (B1 or B184). In contrast to the Indo-Pacific where host-generalist symbionts dominate many coral communities, partner specificity in the Caribbean is relatively high and is influenced little by the host’s apparent mode of symbiont acquisition. Habitat depth (ambient light) and geographic isolation appeared to influence the bathymetric zonation and regional distribution for most of the Symbiodinium spp. characterized. Approximately 80% of Symbiodinium types were endemic to either the eastern or western Caribbean and 40–50% were distributed to compatible hosts living in shallow, high-irradiance, or deep, low-irradiance environments. These ecologic, geographic, and phylogenetic patterns indicate that most of the present Symbiodinium diversity probably originated from adaptive radiations driven by ecological specialization in separate Caribbean regions during the Pliocene and Pleistocene periods.

The application of RAPD markers in stock discrimination of the four‐wing flyingfish, Hirundichthys affinis in the central western Atlantic

The polymerase chain reaction–random amplified polymorphic DNA (PCR–RAPD) technique was used to examine genetic variability and population structuring in the four‐wing flyingfish, Hirundichthys affinis within the central western Atlantic. Three random decamer primers and pairs of these primers were used to amplify nuclear DNA from 360 fish sampled from six populations (at five locations) across the region. A total of 58 polymorphic RAPD markers were identified, 20 of which were population‐specific and six of which were subregional or stock‐specific markers. Cluster analysis of similarity indices indicated the presence of three genetically distinct subregional stocks located in the eastern Caribbean, southern Netherlands Antilles and Brazil, respectively. Estimates of gene diversity (φ) and gene flow (Nm) are consistent with this three‐stock hypothesis. Furthermore, partially restricted gene flow was apparent among spatially and temporally separate sampled populations within the eastern Caribbean subregional stock, indicating the possible presence of different spawning groups. These results are entirely consistent with those obtained from PCR–RFLP analysis of the mtDNA D‐loop in the same fish, indicating the presence of barriers to dispersal and interbreeding in both sexes. We conclude that the PCR–RAPD technique is suitable for determining population stock structure in this species and that a three‐stock approach to managing H. affinis within the central western Atlantic would be appropriate.

Parrotfish Size: A Simple yet Useful Alternative Indicator of Fishing Effects on Caribbean Reefs?

There is great need to identify simple yet reliable indicators of fishing effects within the multi-species, multi-gear, data-poor fisheries of the Caribbean. Here, we investigate links between fishing pressure and three simple fish metrics, i.e. average fish weight (an estimate of average individual fish size), fish density and fish biomass, derived from (1) the parrotfish family, a ubiquitous herbivore family across the Caribbean, and (2) three fish groups of “commercial” carnivores including snappers and groupers, which are widely-used as indicators of fishing effects. We hypothesize that, because most Caribbean reefs are being heavily fished, fish metrics derived from the less vulnerable parrotfish group would exhibit stronger relationships with fishing pressure on today’s Caribbean reefs than those derived from the highly vulnerable commercial fish groups. We used data from 348 Atlantic and Gulf Rapid Reef Assessment (AGRRA) reef-surveys across the Caribbean to assess relationships between two independent indices of fishing pressure (one derived from human population density data, the other from open to fishing versus protected status) and the three fish metrics derived from the four aforementioned fish groups. We found that, although two fish metrics, average parrotfish weight and combined biomass of selected commercial species, were consistently negatively linked to the indices of fishing pressure across the Caribbean, the parrotfish metric consistently outranked the latter in the strength of the relationship, thus supporting our hypothesis. Overall, our study highlights that (assemblage-level) average parrotfish size might be a useful alternative indicator of fishing effects over the typical conditions of most Caribbean shallow reefs: moderate-to-heavy levels of fishing and low abundance of highly valued commercial species.

Caribbean-wide, long-term study of seagrass beds reveals local variations, shifts in community structure and occasional collapse.

The CARICOMP monitoring network gathered standardized data from 52 seagrass sampling stations at 22 sites (mostly Thalassia testudinum-dominated beds in reef systems) across the Wider Caribbean twice a year over the period 1993 to 2007 (and in some cases up to 2012). Wide variations in community total biomass (285 to >2000 g dry m−2) and annual foliar productivity of the dominant seagrass T. testudinum (<200 and >2000 g dry m−2) were found among sites. Solar-cycle related intra-annual variations in T. testudinum leaf productivity were detected at latitudes > 16°N. Hurricanes had little to no long-term effects on these well-developed seagrass communities, except for 1 station, where the vegetation was lost by burial below ∼1 m sand. At two sites (5 stations), the seagrass beds collapsed due to excessive grazing by turtles or sea-urchins (the latter in combination with human impact and storms). The low-cost methods of this regional-scale monitoring program were sufficient to detect long-term shifts in the communities, and fifteen (43%) out of 35 long-term monitoring stations (at 17 sites) showed trends in seagrass communities consistent with expected changes under environmental deterioration.

Distribution and relative abundance of flying fish (Exocoetidae) in the eastern Caribbean. II. Spawning substrata, eggs and larvae

We investigated the distribution and relative abundance of flyingfish spawning substrata (flotsam), eggs and larvae by neuston tows at 40 stations across a 67 500 square nautical mile (mm2) area of the eastern Caribbean from April 10 to May 6, 1988. Flotsam occurred m only 48% of the tows and in quantities < 1 g nmil tow. Non-buoyant flyingfish eggs characteristic of Huundichthys affmis, Parexocoetus brachypterus and Cypselurus cyanopterus were virtually absent. Although 21 % of the 3014 fish eggs collected were flyingfish eggs, all but 3 of these were pelagic eggs characteristic of Exo- coetus spp. The rarity of eggs and flotsam suggests that flyingfish may typically spawn on floating material until it submerges, and/or spawn on submerged substrata. Catch rates of all fish larvae and of flyingfish larvae were significantly higher in day tows than night tows, and mean larval size was larger by night. This indicates that larvae, and particularly smaller larvae, may move downwards at night. This may be a light response, since P. brachypterus larvae were more abundant at the surface around full moon than new moon. Larval abundance varied significantly across the survey area for all flying- fish, and separately for E. voLitans, P. brachypterus and C. cyanopterus. Small larvae of E. volitans were more abundant at oceanic than coastal stations. The reverse was true for P. brachypterus, indicating different spawning locations for these species. The geographical distribution of larvae of C. cyano- pterus coincided with the adult distribution, both larvae and adults being rare in the southwest sector of the survey area near the South American mainland. Larvae of H. affims were relatively rare. This rarity, and the virtual absence of eggs, is surprising given the abundance of this species in the eastern Caribbean and the fact that H. affms was known to be spawning during the time of the survey. The depth at which H. affms typically spawns and hatches requires further investigation.

A Participatory Approach to Marine Habitat Mapping in the Grenadine Islands

Increasing interest in implementing an ecosystem-based management approach has made stakeholder involvement vital and has highlighted the need for an effective participatory framework. In this study we used a participatory geographic information systems (PGIS) framework to collaboratively map the marine resources of the transboundary Grenadine Islands with a broad range of stakeholders from the two sovereign nations. We found the application of PGIS allowed the collective resolution of an appropriate mapping scale and a locally relevant habitat classification scheme that would not only serve the needs of resource managers, but could also be understood by resource users. Furthermore, multi-level stakeholder involvement in the mapping process captured resource use profiles and other fishing-related attributes, gave credibility to local knowledge and ownership of information, and was instrumental in building capacity to access and use the produced information. Lessons learned included the importance of investing considerable time early in the participatory process, which was later rewarded by stakeholder buy-in and led to financial and in-kind support. Furthermore, hosting the information in multiple formats on a project website has resulted in easy access and use by a wide range of stakeholders over a cross-country scale. We believe our experiences will be valuable to other practitioners considering using PGIS, particularly for those working in similar resource-limited, developing nation contexts.

Selectivity of Experimental Gillnets for Fourwing Flyingfish, Hirundichthys affinis, off Barbados

Four experimental gillnets of stretched mesh sizes 2.54, 3.18, 3.81 and 4.45 cm (1.00, 1.25, 1.50, 1.75 inches) were fished together to allow estimation of gillnet selectivity for Hirundichthys affinis, by the method of comparing the catches of fish in the various length classes in the different nets. Only the 3.18 cm and 3.81 cm nets caught appreciable numbers of fish. The combined selectivity of the 3.18 cm and 3.81 cm nets is close to unity for the range of sizes of H. affinis which are available to the nets. Therefore, the size distribution of the combined catch for these nets can be used as an estimate of the size distribution of the available stock. The length frequency of fish caught in the 3.81 cm net coincided closely with the selectivity curve, indicating that this net effectively targets the sizes of fish available off Barbados. An increase or decrease in net mesh size by 0.64 cm (0.25″) would be expected to result in a substantial reduction in catch per unit effort.

Restriction site mapping of the mitochondrial DNA of the four-wing flyingfish, Hirundichthys affinis.

Mitochondrial DNA was isolated from samples of the four-wing flyingfish, Hirundickthys affinis, collected in Barbados in January 1996 and subjected to restriction enzyme analysis, using 13 restriction endonucleases which recognise hexanucleotide sequences, in single and double digests. The resulting restricted DNA fragments were used to map the 14 enzyme recognition sites of 6 endonucleases (7 had no sites) on the flyingfish mtDNA molecule for the first time. In addition, the mtDNA D-loop region was positioned on the restriction site map, for the first time, by selective restriction digestion of the mtDNA molecule followed by polymerase chain reaction (PCR) amplification of the resulting fragments using specific mtDNA D-loop primers. The size of the flyingfish mtDNA molecule (18 kb) was also determined.

Widespread local chronic stressors in Caribbean coastal habitats

Coastal ecosystems and the livelihoods they support are threatened by stressors acting at global and local scales. Here we used the data produced by the Caribbean Coastal Marine Productivity program (CARICOMP), the longest, largest monitoring program in the wider Caribbean, to evidence local-scale (decreases in water quality) and global-scale (increases in temperature) stressors across the basin. Trend analyses showed that visibility decreased at 42% of the stations, indicating that local-scale chronic stressors are widespread. On the other hand, only 18% of the stations showed increases in water temperature that would be expected from global warming, partially reflecting the limits in detecting trends due to inherent natural variability of temperature data. Decreases in visibility were associated with increased human density. However, this link can be decoupled by environmental factors, with conditions that increase the flush of water, dampening the effects of human influence. Besides documenting environmental stressors throughout the basin, our results can be used to inform future monitoring programs, if the desire is to identify stations that provide early warning signals of anthropogenic impacts. All CARICOMP environmental data are now available, providing an invaluable baseline that can be used to strengthen research, conservation, and management of coastal ecosystems in the Caribbean basin.